Wall clock time and date at job start Mon Mar 30 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86792 * 119.99738 * 2 1 4 4 H 1.48506 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47495 * 299.99718 * 3 2 1 6 6 H 1.48498 * 109.47525 * 59.99934 * 3 2 1 7 7 C 1.38951 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99393 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00418 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00424 * 185.22097 * 9 7 2 11 11 O 1.21299 * 119.99507 * 354.67036 * 10 9 7 12 12 C 1.50697 * 120.00612 * 174.67290 * 10 9 7 13 13 N 1.46893 * 109.47309 * 181.48733 * 12 10 9 14 14 C 1.47850 * 110.99948 * 291.14841 * 13 12 10 15 15 C 1.54912 * 104.89050 * 213.58070 * 14 13 12 16 16 C 1.55429 * 101.52308 * 37.06687 * 15 14 13 17 17 C 1.47448 * 111.00126 * 170.30884 * 13 12 10 18 18 H 1.09000 * 109.88683 * 242.66520 * 17 13 12 19 19 C 1.50702 * 109.88501 * 3.68489 * 17 13 12 20 20 C 1.38653 * 120.78880 * 63.77097 * 19 17 13 21 21 C 1.38203 * 119.15843 * 179.79553 * 20 19 17 22 22 N 1.31871 * 120.76775 * 0.48616 * 21 20 19 23 23 C 1.31875 * 121.72479 * 359.74127 * 22 21 20 24 24 C 1.38203 * 120.76396 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00004 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00170 * 5.21828 * 9 7 2 27 27 H 1.08999 * 109.46986 * 61.48575 * 12 10 9 28 28 H 1.08999 * 109.46854 * 301.48978 * 12 10 9 29 29 H 1.08994 * 110.37073 * 332.46274 * 14 13 12 30 30 H 1.08993 * 110.37593 * 94.69835 * 14 13 12 31 31 H 1.09003 * 110.98668 * 155.21635 * 15 14 13 32 32 H 1.09000 * 110.99264 * 279.02988 * 15 14 13 33 33 H 1.08999 * 110.69602 * 205.96983 * 16 15 14 34 34 H 1.09007 * 110.84593 * 82.82195 * 16 15 14 35 35 H 1.07998 * 120.41593 * 0.02562 * 20 19 17 36 36 H 1.07998 * 119.61664 * 180.20611 * 21 20 19 37 37 H 1.07990 * 119.61594 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.41960 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9931 -3.5554 0.1083 11 8 3.2061 -3.5599 0.1061 12 6 1.2350 -4.8521 0.2304 13 7 2.1853 -5.9638 0.3677 14 6 2.9338 -6.1793 -0.8890 15 6 3.1746 -7.7083 -0.9517 16 6 1.8452 -8.2564 -0.3617 17 6 1.4881 -7.2145 0.7192 18 1 1.8230 -7.5638 1.6959 19 6 -0.0008 -6.9828 0.7408 20 6 -0.6809 -6.6294 -0.4146 21 6 -2.0472 -6.4292 -0.3572 22 7 -2.7011 -6.5613 0.7802 23 6 -2.0864 -6.8916 1.8992 24 6 -0.7223 -7.1123 1.9178 25 1 -0.4850 0.8400 -0.0004 26 1 0.3564 -2.3925 -0.0744 27 1 0.6264 -5.0024 -0.6612 28 1 0.5903 -4.8146 1.1084 29 1 2.3417 -5.8530 -1.7440 30 1 3.8841 -5.6464 -0.8608 31 1 3.3133 -8.0397 -1.9808 32 1 4.0245 -7.9955 -0.3327 33 1 1.9982 -9.2386 0.0854 34 1 1.0698 -8.2992 -1.1266 35 1 -0.1502 -6.5158 -1.3484 36 1 -2.5848 -6.1571 -1.2535 37 1 -2.6555 -6.9901 2.8117 38 1 -0.2244 -7.3822 2.8374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125502997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:19 Heat of formation + Delta-G solvation = 15.410809 kcal Electronic energy + Delta-G solvation = -21417.698375 eV Core-core repulsion = 18260.352526 eV Total energy + Delta-G solvation = -3157.345849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86850 -38.82195 -37.52393 -33.92090 -32.99197 -31.89839 -31.20907 -31.11115 -28.31112 -26.71336 -24.36584 -23.49732 -23.21196 -21.18242 -20.26394 -19.12354 -17.88103 -16.91726 -16.54752 -15.95776 -15.67550 -15.11822 -14.98297 -14.50426 -14.42642 -13.88545 -13.76823 -13.65768 -13.22947 -12.92534 -12.69340 -12.13307 -11.90968 -11.70274 -11.48825 -11.42447 -11.15281 -10.94882 -10.91934 -10.65802 -10.32718 -10.22042 -9.65075 -9.47192 -9.45079 -9.12805 -8.42341 -7.96004 -7.86359 -6.39090 -3.80353 1.12011 1.19619 3.17632 3.27906 3.35067 3.74204 3.90766 4.08361 4.28313 4.39304 4.47164 4.55461 4.77141 4.84010 5.04395 5.10456 5.12457 5.20396 5.26168 5.43884 5.52253 5.59467 5.71173 5.72893 5.75483 5.84914 5.88841 5.92827 5.98342 6.21297 6.30773 6.34168 6.45971 6.67136 7.21094 7.21156 7.57427 7.97227 8.08767 8.64221 9.20484 9.56774 10.08464 10.78725 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.005421 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.490762 B = 5163.423973 C = 6301.829116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.578 6.578 12 C 0.036 3.964 13 N -0.490 5.490 14 C 0.049 3.951 15 C -0.130 4.130 16 C -0.134 4.134 17 C 0.105 3.895 18 H 0.096 0.904 19 C -0.048 4.048 20 C -0.165 4.165 21 C 0.099 3.901 22 N -0.487 5.487 23 C 0.098 3.902 24 C -0.165 4.165 25 H 0.271 0.729 26 H 0.391 0.609 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -16.533 -0.359 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.462 6.462 12 C -0.095 4.095 13 N -0.213 5.213 14 C -0.078 4.078 15 C -0.168 4.168 16 C -0.172 4.172 17 C -0.003 4.003 18 H 0.114 0.886 19 C -0.057 4.057 20 C -0.186 4.186 21 C -0.057 4.057 22 N -0.196 5.196 23 C -0.059 4.059 24 C -0.185 4.185 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.149 0.851 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.387 -16.071 0.066 16.248 hybrid contribution -0.003 0.678 -0.610 0.912 sum -2.390 -15.393 -0.545 15.587 Atomic orbital electron populations 1.69632 1.05935 1.28004 1.50728 1.25268 0.95624 0.99696 0.97405 0.85810 0.79695 0.81198 0.77696 1.19231 1.20785 1.20750 1.19733 0.93326 0.82188 1.47488 0.87919 1.41843 1.09502 1.04718 1.64169 1.19781 0.88415 0.84611 0.84246 1.90500 1.13684 1.86791 1.55196 1.22404 0.94361 0.91488 1.01218 1.63651 1.23079 1.01638 1.32922 1.23105 1.00242 0.94774 0.89702 1.22813 0.97278 0.95740 1.01001 1.22947 0.98036 0.98455 0.97780 1.21655 0.86938 0.91142 1.00520 0.88588 1.20681 0.96490 0.95138 0.93396 1.22025 0.95890 1.01548 0.99112 1.22713 0.91400 0.95407 0.96166 1.67669 1.40803 1.12044 0.99078 1.22738 0.92044 0.94706 0.96395 1.22053 0.95600 1.02292 0.98578 0.91953 0.77615 0.92629 0.89624 0.94124 0.88475 0.90856 0.90512 0.90659 0.91123 0.85083 0.82782 0.82853 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 13.06 55.50 0.72 -24.30 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 8 H 0.10 3.05 7.17 -52.49 -0.38 2.67 16 9 N -0.57 -14.70 5.28 -10.97 -0.06 -14.76 16 10 C 0.44 10.74 7.59 -10.99 -0.08 10.66 16 11 O -0.58 -15.75 14.54 5.54 0.08 -15.67 16 12 C 0.04 0.68 3.94 -4.98 -0.02 0.66 16 13 N -0.49 -8.13 4.88 -226.16 -1.10 -9.23 16 14 C 0.05 0.76 5.71 -2.29 -0.01 0.75 16 15 C -0.13 -1.47 7.10 -24.43 -0.17 -1.64 16 16 C -0.13 -1.39 6.38 -24.75 -0.16 -1.55 16 17 C 0.11 1.34 3.66 -67.87 -0.25 1.09 16 18 H 0.10 1.16 7.98 -51.93 -0.41 0.75 16 19 C -0.05 -0.60 3.09 -104.31 -0.32 -0.92 16 20 C -0.17 -2.06 6.37 -39.44 -0.25 -2.31 16 21 C 0.10 1.26 11.18 -17.55 -0.20 1.06 16 22 N -0.49 -6.70 10.36 -13.25 -0.14 -6.84 16 23 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 24 C -0.16 -1.92 9.73 -39.44 -0.38 -2.30 16 25 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.39 9.87 7.92 -40.82 -0.32 9.54 16 27 H 0.06 0.95 4.97 -51.93 -0.26 0.69 16 28 H 0.09 1.59 6.93 -51.93 -0.36 1.23 16 29 H 0.04 0.63 7.63 -51.93 -0.40 0.24 16 30 H 0.10 1.77 7.32 -51.93 -0.38 1.39 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.71 6.74 -51.93 -0.35 0.36 16 35 H 0.13 1.53 6.84 -52.49 -0.36 1.18 16 36 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.14 1.28 8.02 -52.49 -0.42 0.86 16 LS Contribution 310.46 15.07 4.68 4.68 Total: -1.00 -32.31 310.46 -8.01 -40.32 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -4.89 Total: 11.11 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.29 Total: -1.61 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.57 Total: -55.14 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.08 Total: -15.67 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.31 -8.01 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125502997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.736 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds