Wall clock time and date at job start Mon Mar 30 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86792 * 119.99738 * 2 1 4 4 H 1.48506 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47495 * 299.99718 * 3 2 1 6 6 H 1.48498 * 109.47525 * 59.99934 * 3 2 1 7 7 C 1.38951 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99393 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00418 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00424 * 185.22097 * 9 7 2 11 11 O 1.21299 * 119.99507 * 354.67036 * 10 9 7 12 12 C 1.50697 * 120.00612 * 174.67290 * 10 9 7 13 13 N 1.46893 * 109.47309 * 181.48733 * 12 10 9 14 14 C 1.47850 * 110.99948 * 291.14841 * 13 12 10 15 15 C 1.54912 * 104.89050 * 213.58070 * 14 13 12 16 16 C 1.55429 * 101.52308 * 37.06687 * 15 14 13 17 17 C 1.47448 * 111.00126 * 170.30884 * 13 12 10 18 18 H 1.09000 * 109.88683 * 242.66520 * 17 13 12 19 19 C 1.50702 * 109.88501 * 3.68489 * 17 13 12 20 20 C 1.38653 * 120.78880 * 63.77097 * 19 17 13 21 21 C 1.38203 * 119.15843 * 179.79553 * 20 19 17 22 22 N 1.31871 * 120.76775 * 0.48616 * 21 20 19 23 23 C 1.31875 * 121.72479 * 359.74127 * 22 21 20 24 24 C 1.38203 * 120.76396 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00004 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00170 * 5.21828 * 9 7 2 27 27 H 1.08999 * 109.46986 * 61.48575 * 12 10 9 28 28 H 1.08999 * 109.46854 * 301.48978 * 12 10 9 29 29 H 1.08994 * 110.37073 * 332.46274 * 14 13 12 30 30 H 1.08993 * 110.37593 * 94.69835 * 14 13 12 31 31 H 1.09003 * 110.98668 * 155.21635 * 15 14 13 32 32 H 1.09000 * 110.99264 * 279.02988 * 15 14 13 33 33 H 1.08999 * 110.69602 * 205.96983 * 16 15 14 34 34 H 1.09007 * 110.84593 * 82.82195 * 16 15 14 35 35 H 1.07998 * 120.41593 * 0.02562 * 20 19 17 36 36 H 1.07998 * 119.61664 * 180.20611 * 21 20 19 37 37 H 1.07990 * 119.61594 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.41960 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9931 -3.5554 0.1083 11 8 3.2061 -3.5599 0.1061 12 6 1.2350 -4.8521 0.2304 13 7 2.1853 -5.9638 0.3677 14 6 2.9338 -6.1793 -0.8890 15 6 3.1746 -7.7083 -0.9517 16 6 1.8452 -8.2564 -0.3617 17 6 1.4881 -7.2145 0.7192 18 1 1.8230 -7.5638 1.6959 19 6 -0.0008 -6.9828 0.7408 20 6 -0.6809 -6.6294 -0.4146 21 6 -2.0472 -6.4292 -0.3572 22 7 -2.7011 -6.5613 0.7802 23 6 -2.0864 -6.8916 1.8992 24 6 -0.7223 -7.1123 1.9178 25 1 -0.4850 0.8400 -0.0004 26 1 0.3564 -2.3925 -0.0744 27 1 0.6264 -5.0024 -0.6612 28 1 0.5903 -4.8146 1.1084 29 1 2.3417 -5.8530 -1.7440 30 1 3.8841 -5.6464 -0.8608 31 1 3.3133 -8.0397 -1.9808 32 1 4.0245 -7.9955 -0.3327 33 1 1.9982 -9.2386 0.0854 34 1 1.0698 -8.2992 -1.1266 35 1 -0.1502 -6.5158 -1.3484 36 1 -2.5848 -6.1571 -1.2535 37 1 -2.6555 -6.9901 2.8117 38 1 -0.2244 -7.3822 2.8374 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125502997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:19 Heat of formation + Delta-G solvation = -7.843906 kcal Electronic energy + Delta-G solvation = -21418.706775 eV Core-core repulsion = 18260.352526 eV Total energy + Delta-G solvation = -3158.354249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.92318 -40.22568 -39.10401 -35.97830 -33.99929 -33.39742 -32.93684 -32.14009 -29.34147 -28.32683 -26.15728 -24.52215 -24.19273 -22.30192 -21.45923 -20.80281 -19.88940 -18.21947 -17.71370 -17.19669 -16.79221 -16.62594 -16.13733 -16.08096 -15.99570 -15.59108 -15.02568 -14.56328 -14.46758 -14.25812 -14.12520 -13.57336 -13.40155 -13.10803 -12.91316 -12.66516 -12.53204 -12.43583 -12.16919 -12.10187 -11.98252 -11.60432 -11.50091 -10.70890 -10.42803 -10.24379 -10.03359 -10.02633 -9.23743 -8.48332 -5.98015 0.19689 0.24813 1.34972 1.39894 1.54556 2.00796 2.26691 2.69748 2.93033 3.17534 3.35508 3.43426 3.61598 3.71688 3.77656 3.95403 4.12547 4.19601 4.25090 4.27232 4.31350 4.45002 4.47030 4.57903 4.70244 4.82920 4.92096 4.95188 4.99022 5.06828 5.18669 5.29131 5.38758 5.42299 5.76981 5.83896 5.99903 6.07664 6.57390 7.04538 7.10399 7.52368 8.07805 8.69402 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.005421 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.490762 B = 5163.423973 C = 6301.829116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.059 3.941 13 N -0.511 5.511 14 C 0.045 3.955 15 C -0.118 4.118 16 C -0.124 4.124 17 C 0.106 3.894 18 H 0.106 0.894 19 C -0.057 4.057 20 C -0.171 4.171 21 C 0.089 3.911 22 N -0.512 5.512 23 C 0.091 3.909 24 C -0.165 4.165 25 H 0.277 0.723 26 H 0.393 0.607 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.170 0.830 37 H 0.178 0.822 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -17.652 -0.136 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.499 6.499 12 C -0.072 4.072 13 N -0.235 5.235 14 C -0.082 4.082 15 C -0.156 4.156 16 C -0.162 4.162 17 C -0.001 4.001 18 H 0.124 0.876 19 C -0.066 4.066 20 C -0.192 4.192 21 C -0.067 4.067 22 N -0.221 5.221 23 C -0.066 4.066 24 C -0.185 4.185 25 H 0.087 0.913 26 H 0.226 0.774 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.187 0.813 37 H 0.195 0.805 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.890 -17.215 0.287 17.458 hybrid contribution 0.144 0.982 -0.649 1.186 sum -2.746 -16.232 -0.362 16.467 Atomic orbital electron populations 1.69697 1.06934 1.29242 1.50432 1.26079 0.96536 1.02495 0.96234 0.84851 0.78024 0.76958 0.78374 1.19700 1.19424 1.19644 1.19696 0.92647 0.83907 1.49915 0.90276 1.41921 1.09493 1.04929 1.64900 1.20822 0.88367 0.85953 0.82190 1.90473 1.15543 1.87621 1.56225 1.22136 0.93835 0.89288 1.01971 1.63539 1.23542 1.02814 1.33612 1.23039 0.98291 0.97707 0.89178 1.22763 0.98068 0.92150 1.02593 1.22932 0.97347 0.98740 0.97164 1.21736 0.86810 0.89800 1.01766 0.87615 1.20756 0.96386 0.95608 0.93859 1.22107 0.95932 1.01701 0.99411 1.23016 0.91754 0.95354 0.96605 1.67695 1.41670 1.12901 0.99863 1.23193 0.92588 0.94014 0.96803 1.22320 0.95571 1.01513 0.99116 0.91313 0.77396 0.90974 0.89451 0.94648 0.92157 0.88744 0.90083 0.88072 0.90474 0.84604 0.81328 0.80519 0.82563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.09 13.06 21.66 0.28 -50.81 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 8 H 0.08 4.90 7.17 -2.91 -0.02 4.88 16 9 N -0.58 -30.73 5.28 -306.99 -1.62 -32.35 16 10 C 0.44 21.82 7.59 87.66 0.66 22.49 16 11 O -0.61 -34.68 14.54 -3.09 -0.04 -34.72 16 12 C 0.06 2.18 3.94 85.56 0.34 2.51 16 13 N -0.51 -16.66 4.88 -869.44 -4.24 -20.91 16 14 C 0.05 1.40 5.71 86.77 0.50 1.90 16 15 C -0.12 -2.40 7.10 32.08 0.23 -2.17 16 16 C -0.12 -2.19 6.38 31.88 0.20 -1.99 16 17 C 0.11 2.47 3.66 44.51 0.16 2.63 16 18 H 0.11 2.27 7.98 -2.39 -0.02 2.25 16 19 C -0.06 -1.31 3.09 -19.66 -0.06 -1.37 16 20 C -0.17 -3.99 6.37 22.36 0.14 -3.85 16 21 C 0.09 2.13 11.18 84.68 0.95 3.08 16 22 N -0.51 -13.42 10.36 -195.85 -2.03 -15.44 16 23 C 0.09 2.01 11.18 84.68 0.95 2.95 16 24 C -0.16 -3.47 9.73 22.36 0.22 -3.25 16 25 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.39 20.28 7.92 -92.71 -0.73 19.54 16 27 H 0.07 2.44 4.97 -2.39 -0.01 2.42 16 28 H 0.09 3.21 6.93 -2.39 -0.02 3.19 16 29 H 0.04 1.10 7.63 -2.39 -0.02 1.08 16 30 H 0.06 2.29 7.32 -2.39 -0.02 2.27 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.30 6.74 -2.38 -0.02 1.29 16 35 H 0.14 2.97 6.84 -2.91 -0.02 2.95 16 36 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.18 2.88 8.06 -2.92 -0.02 2.85 16 38 H 0.16 2.52 8.02 -2.91 -0.02 2.50 16 Total: -1.00 -70.76 310.46 0.29 -70.48 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.35 Total: 33.90 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.56 Total: 4.10 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -7.61 Total: -119.51 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.04 Total: -34.72 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.76 0.29 -70.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125502997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.631 kcal (2) G-P(sol) polarization free energy of solvation -70.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds