Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 120.00110 * 2 1 4 4 H 1.48504 * 109.47136 * 239.99392 * 3 2 1 5 5 H 1.48501 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47423 * 119.99480 * 3 2 1 7 7 C 1.40141 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41751 * 119.99730 * 0.02562 * 7 2 1 10 10 O 1.21769 * 120.00519 * 359.97438 * 9 7 2 11 11 N 1.34781 * 120.00080 * 179.97438 * 9 7 2 12 12 C 1.39068 * 120.00582 * 185.09048 * 11 9 7 13 13 C 1.39264 * 119.62631 * 174.91618 * 12 11 9 14 14 C 1.38189 * 119.18821 * 180.02562 * 13 12 11 15 15 C 1.39525 * 118.43713 * 359.97438 * 14 13 12 16 16 N 1.39678 * 120.41626 * 179.97438 * 15 14 13 17 17 C 1.46850 * 111.00007 * 304.23408 * 16 15 14 18 18 C 1.53036 * 109.51981 * 174.16070 * 17 16 15 19 19 C 1.53122 * 109.28042 * 59.18250 * 18 17 16 20 20 C 1.53120 * 109.15775 * 302.34086 * 19 18 17 21 21 C 1.46843 * 110.99976 * 180.02562 * 16 15 14 22 22 C 1.38953 * 119.16913 * 0.02562 * 15 14 13 23 23 N 1.31825 * 120.74125 * 0.02562 * 22 15 14 24 24 H 0.97000 * 119.99997 * 0.02562 * 1 2 3 25 25 H 0.97010 * 119.99630 * 5.09727 * 11 9 7 26 26 H 1.08007 * 120.40454 * 0.02562 * 13 12 11 27 27 H 1.08001 * 120.78687 * 179.97438 * 14 13 12 28 28 H 1.09004 * 109.45950 * 294.17213 * 17 16 15 29 29 H 1.08993 * 109.46651 * 54.14523 * 17 16 15 30 30 H 1.08994 * 109.50514 * 299.23156 * 18 17 16 31 31 H 1.09011 * 109.50296 * 179.11743 * 18 17 16 32 32 H 1.09003 * 109.52451 * 182.44123 * 19 18 17 33 33 H 1.08996 * 109.58027 * 62.27890 * 19 18 17 34 34 H 1.09009 * 109.50421 * 297.71772 * 20 19 18 35 35 H 1.09000 * 109.50597 * 177.60052 * 20 19 18 36 36 H 1.09000 * 109.46638 * 305.85572 * 21 16 15 37 37 H 1.09003 * 109.46252 * 65.83402 * 21 16 15 38 38 H 1.07992 * 119.63072 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0940 1.6965 1.2126 7 6 2.0070 -1.2137 0.0005 8 1 3.0869 -1.2137 0.0010 9 6 1.2982 -2.4412 0.0005 10 8 0.0805 -2.4413 0.0005 11 7 1.9720 -3.6085 0.0005 12 6 1.2808 -4.8105 -0.1063 13 6 1.9891 -6.0049 -0.2126 14 6 1.2931 -7.1940 -0.3188 15 6 -0.1014 -7.1502 -0.3148 16 7 -0.8462 -8.3272 -0.4205 17 6 -0.4743 -9.0788 -1.6261 18 6 -1.2011 -10.4255 -1.6335 19 6 -2.7130 -10.1842 -1.6060 20 6 -3.0675 -9.3584 -0.3663 21 6 -2.2865 -8.0426 -0.3955 22 6 -0.7401 -5.9211 -0.2055 23 7 -0.0437 -4.8062 -0.1069 24 1 -0.4850 0.8400 -0.0004 25 1 2.9392 -3.6102 0.0752 26 1 3.0692 -6.0018 -0.2119 27 1 1.8163 -8.1351 -0.4029 28 1 -0.7569 -8.5086 -2.5111 29 1 0.6025 -9.2473 -1.6313 30 1 -0.9084 -11.0019 -0.7560 31 1 -0.9370 -10.9766 -2.5362 32 1 -3.2339 -11.1410 -1.5674 33 1 -3.0128 -9.6421 -2.5028 34 1 -2.8042 -9.9180 0.5314 35 1 -4.1368 -9.1470 -0.3634 36 1 -2.5260 -7.4584 0.4930 37 1 -2.5606 -7.4774 -1.2864 38 1 -1.8192 -5.8786 -0.2012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132836093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 14.251653 kcal Electronic energy + Delta-G solvation = -20777.703752 eV Core-core repulsion = 17620.307638 eV Total energy + Delta-G solvation = -3157.396114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34960 -38.69743 -36.97275 -34.19402 -32.89296 -32.32761 -31.68377 -30.76152 -28.29174 -26.40981 -24.49686 -24.08796 -22.14610 -21.67407 -19.94403 -19.77223 -17.62509 -17.22637 -16.33397 -15.73541 -15.21344 -14.88411 -14.72862 -14.18987 -13.99844 -13.91954 -13.63871 -13.58463 -13.24872 -12.75844 -12.45946 -12.21835 -12.07523 -11.84152 -11.32576 -11.25696 -11.10776 -10.96209 -10.59582 -10.56491 -10.51367 -10.32101 -10.00036 -9.25831 -8.99860 -8.78290 -8.34681 -7.38773 -6.80990 -6.26422 -4.81788 1.76916 1.95548 3.10695 3.15507 3.17500 3.83837 4.00865 4.34801 4.43183 4.64924 4.65846 4.73406 4.80928 5.07252 5.18551 5.24592 5.28377 5.40436 5.48944 5.49693 5.61914 5.70292 5.75929 5.77647 5.86185 5.87446 5.95624 6.02777 6.13104 6.22538 6.36581 6.42547 6.80286 7.17196 7.29591 7.46814 7.70005 8.02438 8.18081 8.78462 8.87224 9.44467 10.48622 10.73500 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044281 B = 0.003567 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.177513 B = 7848.734059 C = 8313.214167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.087 3.913 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.532 3.468 10 O -0.519 6.519 11 N -0.675 5.675 12 C 0.374 3.626 13 C -0.220 4.220 14 C -0.063 4.063 15 C -0.019 4.019 16 N -0.477 5.477 17 C 0.056 3.944 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.117 4.117 21 C 0.048 3.952 22 C 0.096 3.904 23 N -0.450 5.450 24 H 0.272 0.728 25 H 0.396 0.604 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -17.361 -2.667 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.338 3.662 10 O -0.396 6.396 11 N -0.319 5.319 12 C 0.139 3.861 13 C -0.246 4.246 14 C -0.091 4.091 15 C -0.119 4.119 16 N -0.195 5.195 17 C -0.070 4.070 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.079 4.079 22 C -0.068 4.068 23 N -0.165 5.165 24 H 0.083 0.917 25 H 0.230 0.770 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.846 -16.587 -2.211 16.836 hybrid contribution 1.330 0.429 -0.620 1.529 sum -0.516 -16.158 -2.831 16.412 Atomic orbital electron populations 1.70008 1.07209 1.27834 1.32626 1.25732 0.94637 1.00541 0.92592 0.86352 0.79822 0.80576 0.79572 1.19149 1.20398 1.19117 1.19998 0.94178 0.90033 1.53570 0.91396 1.17199 0.88087 0.81767 0.79121 1.90760 1.12854 1.84894 1.51062 1.44619 1.09699 1.04305 1.73285 1.18889 0.88710 0.86707 0.91771 1.21359 1.00303 0.91892 1.11002 1.20755 0.91966 0.97576 0.98795 1.19710 0.93378 0.89996 1.08826 1.59158 1.04729 1.18614 1.36984 1.22229 1.00338 0.94203 0.90252 1.21611 0.95155 0.96584 1.02150 1.21597 0.96117 1.00013 0.98306 1.21604 0.99194 0.95898 0.98744 1.22245 0.86585 0.97320 1.01770 1.22991 1.00005 0.86283 0.97473 1.67969 1.06140 1.28265 1.14084 0.91670 0.76999 0.85481 0.85567 0.94358 0.90458 0.91076 0.91538 0.91875 0.92185 0.91067 0.91317 0.89851 0.93834 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -22.19 11.73 55.56 0.65 -21.54 16 2 C 0.09 2.40 5.50 -17.35 -0.10 2.31 16 3 Si 0.91 19.72 29.56 -169.99 -5.02 14.69 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.54 -15.11 9.31 -37.53 -0.35 -15.46 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.53 15.37 7.53 -14.92 -0.11 15.25 16 10 O -0.52 -17.02 13.13 5.13 0.07 -16.95 16 11 N -0.68 -15.81 5.36 -14.00 -0.08 -15.89 16 12 C 0.37 8.30 7.42 -154.87 -1.15 7.15 16 13 C -0.22 -3.78 9.93 -39.22 -0.39 -4.17 16 14 C -0.06 -0.98 9.27 -39.12 -0.36 -1.34 16 15 C -0.02 -0.31 5.66 -83.54 -0.47 -0.78 16 16 N -0.48 -6.41 4.71 -170.94 -0.80 -7.21 16 17 C 0.06 0.63 5.26 -3.83 -0.02 0.61 16 18 C -0.12 -1.04 6.09 -26.65 -0.16 -1.21 16 19 C -0.12 -1.05 6.00 -26.61 -0.16 -1.21 16 20 C -0.12 -1.11 6.09 -26.65 -0.16 -1.27 16 21 C 0.05 0.58 4.15 -3.83 -0.02 0.56 16 22 C 0.10 1.87 10.00 -17.29 -0.17 1.69 16 23 N -0.45 -10.89 7.86 -12.18 -0.10 -10.98 16 24 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 25 H 0.40 7.66 8.65 -40.82 -0.35 7.30 16 26 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 27 H 0.13 1.58 7.23 -52.49 -0.38 1.20 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.83 6.76 -51.93 -0.35 0.47 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.05 6.99 -51.93 -0.36 0.69 16 37 H 0.04 0.54 7.75 -51.93 -0.40 0.14 16 38 H 0.15 2.61 5.81 -52.49 -0.31 2.30 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -35.05 310.29 -9.31 -44.36 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.08 Total: 6.72 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.62 Total: 2.14 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.32 Total: -55.63 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.07 Total: -16.95 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.05 -9.31 -44.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132836093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.611 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds