Wall clock time and date at job start Mon Mar 30 2020 02:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86797 * 120.00110 * 2 1 4 4 H 1.48504 * 109.47136 * 239.99392 * 3 2 1 5 5 H 1.48501 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47423 * 119.99480 * 3 2 1 7 7 C 1.40141 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41751 * 119.99730 * 0.02562 * 7 2 1 10 10 O 1.21769 * 120.00519 * 359.97438 * 9 7 2 11 11 N 1.34781 * 120.00080 * 179.97438 * 9 7 2 12 12 C 1.39068 * 120.00582 * 185.09048 * 11 9 7 13 13 C 1.39264 * 119.62631 * 174.91618 * 12 11 9 14 14 C 1.38189 * 119.18821 * 180.02562 * 13 12 11 15 15 C 1.39525 * 118.43713 * 359.97438 * 14 13 12 16 16 N 1.39678 * 120.41626 * 179.97438 * 15 14 13 17 17 C 1.46850 * 111.00007 * 304.23408 * 16 15 14 18 18 C 1.53036 * 109.51981 * 174.16070 * 17 16 15 19 19 C 1.53122 * 109.28042 * 59.18250 * 18 17 16 20 20 C 1.53120 * 109.15775 * 302.34086 * 19 18 17 21 21 C 1.46843 * 110.99976 * 180.02562 * 16 15 14 22 22 C 1.38953 * 119.16913 * 0.02562 * 15 14 13 23 23 N 1.31825 * 120.74125 * 0.02562 * 22 15 14 24 24 H 0.97000 * 119.99997 * 0.02562 * 1 2 3 25 25 H 0.97010 * 119.99630 * 5.09727 * 11 9 7 26 26 H 1.08007 * 120.40454 * 0.02562 * 13 12 11 27 27 H 1.08001 * 120.78687 * 179.97438 * 14 13 12 28 28 H 1.09004 * 109.45950 * 294.17213 * 17 16 15 29 29 H 1.08993 * 109.46651 * 54.14523 * 17 16 15 30 30 H 1.08994 * 109.50514 * 299.23156 * 18 17 16 31 31 H 1.09011 * 109.50296 * 179.11743 * 18 17 16 32 32 H 1.09003 * 109.52451 * 182.44123 * 19 18 17 33 33 H 1.08996 * 109.58027 * 62.27890 * 19 18 17 34 34 H 1.09009 * 109.50421 * 297.71772 * 20 19 18 35 35 H 1.09000 * 109.50597 * 177.60052 * 20 19 18 36 36 H 1.09000 * 109.46638 * 305.85572 * 21 16 15 37 37 H 1.09003 * 109.46252 * 65.83402 * 21 16 15 38 38 H 1.07992 * 119.63072 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0940 1.6965 1.2126 7 6 2.0070 -1.2137 0.0005 8 1 3.0869 -1.2137 0.0010 9 6 1.2982 -2.4412 0.0005 10 8 0.0805 -2.4413 0.0005 11 7 1.9720 -3.6085 0.0005 12 6 1.2808 -4.8105 -0.1063 13 6 1.9891 -6.0049 -0.2126 14 6 1.2931 -7.1940 -0.3188 15 6 -0.1014 -7.1502 -0.3148 16 7 -0.8462 -8.3272 -0.4205 17 6 -0.4743 -9.0788 -1.6261 18 6 -1.2011 -10.4255 -1.6335 19 6 -2.7130 -10.1842 -1.6060 20 6 -3.0675 -9.3584 -0.3663 21 6 -2.2865 -8.0426 -0.3955 22 6 -0.7401 -5.9211 -0.2055 23 7 -0.0437 -4.8062 -0.1069 24 1 -0.4850 0.8400 -0.0004 25 1 2.9392 -3.6102 0.0752 26 1 3.0692 -6.0018 -0.2119 27 1 1.8163 -8.1351 -0.4029 28 1 -0.7569 -8.5086 -2.5111 29 1 0.6025 -9.2473 -1.6313 30 1 -0.9084 -11.0019 -0.7560 31 1 -0.9370 -10.9766 -2.5362 32 1 -3.2339 -11.1410 -1.5674 33 1 -3.0128 -9.6421 -2.5028 34 1 -2.8042 -9.9180 0.5314 35 1 -4.1368 -9.1470 -0.3634 36 1 -2.5260 -7.4584 0.4930 37 1 -2.5606 -7.4774 -1.2864 38 1 -1.8192 -5.8786 -0.2012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132836093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:00 Heat of formation + Delta-G solvation = -10.591689 kcal Electronic energy + Delta-G solvation = -20778.781040 eV Core-core repulsion = 17620.307638 eV Total energy + Delta-G solvation = -3158.473402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70963 -40.10914 -38.69000 -35.66120 -34.60331 -34.17823 -33.02457 -31.75420 -29.90991 -28.24449 -25.66297 -25.30532 -23.41824 -23.00397 -21.66761 -20.71965 -19.46229 -18.54252 -17.82452 -17.64898 -16.79209 -15.99956 -15.89610 -15.66547 -15.51223 -14.99028 -14.91817 -14.78250 -14.40843 -14.27344 -14.06650 -13.80972 -13.29568 -13.09521 -12.97003 -12.75359 -12.64649 -12.15263 -12.05808 -11.87023 -11.47137 -11.34328 -11.31746 -10.93771 -10.77136 -10.46877 -9.88822 -9.38869 -8.36961 -8.29210 -6.97560 0.29878 0.55285 1.39346 1.43386 1.55405 2.21496 2.41512 2.68311 2.84207 3.05611 3.70659 3.77953 3.83012 3.87237 4.01891 4.04765 4.13294 4.25187 4.36480 4.44483 4.53976 4.63683 4.70651 4.84058 4.87382 4.95253 4.99128 5.09792 5.15008 5.22751 5.23812 5.27060 5.45594 5.51916 5.86211 6.03793 6.09534 6.15102 6.39243 6.76451 7.08693 7.68187 8.47416 8.66788 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044281 B = 0.003567 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.177513 B = 7848.734059 C = 8313.214167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.252 1.252 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.569 4.569 8 H 0.092 0.908 9 C 0.518 3.482 10 O -0.575 6.575 11 N -0.675 5.675 12 C 0.328 3.672 13 C -0.194 4.194 14 C -0.060 4.060 15 C 0.008 3.992 16 N -0.476 5.476 17 C 0.051 3.949 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.111 4.111 21 C 0.043 3.957 22 C 0.064 3.936 23 N -0.510 5.510 24 H 0.277 0.723 25 H 0.413 0.587 26 H 0.166 0.834 27 H 0.171 0.829 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -19.546 -3.152 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.189 4.189 3 Si 0.823 3.177 4 H -0.176 1.176 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.604 4.604 8 H 0.110 0.890 9 C 0.325 3.675 10 O -0.457 6.457 11 N -0.322 5.322 12 C 0.095 3.905 13 C -0.218 4.218 14 C -0.088 4.088 15 C -0.093 4.093 16 N -0.193 5.193 17 C -0.074 4.074 18 C -0.149 4.149 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.084 4.084 22 C -0.097 4.097 23 N -0.225 5.225 24 H 0.087 0.913 25 H 0.250 0.750 26 H 0.183 0.817 27 H 0.188 0.812 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.155 -18.878 -2.704 19.071 hybrid contribution 0.642 0.844 -0.475 1.162 sum 0.797 -18.033 -3.179 18.329 Atomic orbital electron populations 1.70196 1.09807 1.29369 1.34090 1.27074 0.95499 1.05275 0.91059 0.84977 0.78147 0.74133 0.80458 1.17621 1.19888 1.17568 1.20577 0.95521 0.90538 1.53812 0.88964 1.17599 0.87750 0.83664 0.78515 1.90707 1.15080 1.86394 1.53527 1.44003 1.10305 1.03827 1.74036 1.19190 0.88699 0.87620 0.95018 1.21678 1.02049 0.90283 1.07827 1.21228 0.91457 0.98701 0.97397 1.19914 0.94327 0.89851 1.05253 1.59231 1.05134 1.16794 1.38114 1.22394 1.01589 0.94937 0.88463 1.21612 0.94852 0.95068 1.03395 1.21623 0.96290 1.00685 0.97419 1.21594 0.99433 0.94327 0.99534 1.22321 0.86308 0.98939 1.00817 1.23062 1.00130 0.86809 0.99750 1.67692 1.08096 1.31140 1.15582 0.91266 0.75015 0.81663 0.81172 0.95298 0.89160 0.90653 0.89459 0.89879 0.92477 0.90871 0.90105 0.91151 0.94685 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.95 11.73 21.85 0.26 -49.70 16 2 C 0.03 1.58 5.50 85.33 0.47 2.05 16 3 Si 1.00 40.67 29.56 68.60 2.03 42.70 16 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.57 -32.50 9.31 23.60 0.22 -32.28 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 9 C 0.52 31.36 7.53 85.11 0.64 32.00 16 10 O -0.58 -40.26 13.13 -4.57 -0.06 -40.32 16 11 N -0.68 -32.61 5.36 -316.39 -1.70 -34.31 16 12 C 0.33 14.92 7.42 133.06 0.99 15.91 16 13 C -0.19 -6.31 9.93 22.51 0.22 -6.09 16 14 C -0.06 -1.70 9.27 22.57 0.21 -1.49 16 15 C 0.01 0.25 5.66 38.37 0.22 0.46 16 16 N -0.48 -11.99 4.71 -694.73 -3.27 -15.26 16 17 C 0.05 1.02 5.26 86.32 0.45 1.47 16 18 C -0.11 -1.60 6.09 30.65 0.19 -1.41 16 19 C -0.12 -1.75 6.00 30.67 0.18 -1.57 16 20 C -0.11 -1.91 6.09 30.65 0.19 -1.72 16 21 C 0.04 1.03 4.15 86.33 0.36 1.39 16 22 C 0.06 2.61 10.00 84.87 0.85 3.46 16 23 N -0.51 -26.09 7.86 -192.45 -1.51 -27.60 16 24 H 0.28 15.53 8.29 -92.71 -0.77 14.76 16 25 H 0.41 16.08 8.65 -92.70 -0.80 15.28 16 26 H 0.17 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.17 3.36 7.23 -2.91 -0.02 3.34 16 28 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.09 1.56 6.76 -2.39 -0.02 1.54 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.84 6.99 -2.39 -0.02 1.83 16 37 H 0.03 0.90 7.75 -2.39 -0.02 0.88 16 38 H 0.15 5.66 5.81 -2.91 -0.02 5.65 16 Total: -1.00 -82.64 310.29 1.21 -81.43 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.28 Total: 30.87 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.19 Total: 12.19 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -6.22 Total: -126.87 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -0.06 Total: -40.32 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -82.64 1.21 -81.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132836093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.842 kcal (2) G-P(sol) polarization free energy of solvation -82.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds