Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86791 * 120.00057 * 2 1 4 4 H 1.48499 * 109.47456 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46934 * 299.99644 * 3 2 1 6 6 H 1.48501 * 109.47633 * 59.99345 * 3 2 1 7 7 C 1.38993 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.37316 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.36499 * 126.06390 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50441 * 180.02562 * 10 9 7 12 12 N 1.40511 * 126.08696 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99805 * 180.02562 * 12 11 10 14 14 O 1.21645 * 120.00260 * 0.02562 * 13 12 11 15 15 C 1.47078 * 119.99742 * 179.97438 * 13 12 11 16 16 C 1.33011 * 119.99868 * 186.99106 * 15 13 12 17 17 C 1.51267 * 120.85041 * 12.17935 * 16 15 13 18 18 C 1.53660 * 108.30936 * 128.62244 * 17 16 15 19 19 C 1.52956 * 109.32796 * 54.85746 * 18 17 16 20 20 C 1.52965 * 109.82137 * 296.27542 * 19 18 17 21 21 C 1.51276 * 120.84842 * 192.46656 * 16 15 13 22 22 C 1.40671 * 107.82880 * 359.97438 * 11 10 9 23 23 N 1.30907 * 108.38564 * 0.02562 * 22 11 10 24 24 H 0.96999 * 119.99844 * 0.02562 * 1 2 3 25 25 H 1.08001 * 126.24445 * 0.04812 * 10 9 7 26 26 H 0.96994 * 119.99879 * 0.02562 * 12 11 10 27 27 H 1.07996 * 120.00025 * 6.99079 * 15 13 12 28 28 H 1.08999 * 109.62645 * 248.38629 * 17 16 15 29 29 H 1.08997 * 109.62652 * 8.96373 * 17 16 15 30 30 H 1.09001 * 109.62670 * 294.84088 * 18 17 16 31 31 H 1.08999 * 109.41861 * 174.75357 * 18 17 16 32 32 H 1.08996 * 109.41888 * 176.16595 * 19 18 17 33 33 H 1.09004 * 109.41599 * 56.37850 * 19 18 17 34 34 H 1.08993 * 109.47933 * 303.62034 * 20 19 18 35 35 H 1.08990 * 109.48380 * 183.57300 * 20 19 18 36 36 H 1.09007 * 109.62274 * 351.03127 * 21 16 15 37 37 H 1.08994 * 109.63152 * 111.60610 * 21 16 15 38 38 H 1.07996 * 125.80968 * 179.73928 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0015 11 6 0.8577 -4.5386 0.0006 12 7 0.9887 -5.9376 0.0006 13 6 -0.1105 -6.7173 -0.0010 14 8 -1.2161 -6.2100 -0.0029 15 6 0.0267 -8.1817 -0.0015 16 6 -1.0495 -8.9504 -0.1432 17 6 -2.3733 -8.3596 -0.5753 18 6 -2.9036 -9.1795 -1.7618 19 6 -2.9717 -10.6557 -1.3670 20 6 -1.5644 -11.1805 -1.0770 21 6 -0.9825 -10.4368 0.1298 22 6 -0.3515 -3.8197 -0.0005 23 7 -0.0715 -2.5409 -0.0007 24 1 -0.4850 0.8400 -0.0004 25 1 2.9302 -3.8708 0.0032 26 1 1.8703 -6.3421 0.0017 27 1 1.0012 -8.6328 0.1131 28 1 -3.0823 -8.4061 0.2513 29 1 -2.2296 -7.3231 -0.8802 30 1 -2.2360 -9.0620 -2.6155 31 1 -3.9003 -8.8282 -2.0285 32 1 -3.4111 -11.2292 -2.1830 33 1 -3.5895 -10.7642 -0.4756 34 1 -0.9286 -11.0156 -1.9468 35 1 -1.6121 -12.2471 -0.8582 36 1 0.0554 -10.7353 0.2781 37 1 -1.5649 -10.6721 1.0205 38 1 -1.3422 -4.2496 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139272945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 52.416997 kcal Electronic energy + Delta-G solvation = -20458.534033 eV Core-core repulsion = 17302.792893 eV Total energy + Delta-G solvation = -3155.741140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.97742 -39.03672 -37.67179 -34.19892 -33.11982 -32.58327 -30.97462 -30.19855 -28.14037 -26.54041 -24.71638 -22.96771 -21.94758 -20.87961 -20.27933 -19.36868 -18.32267 -17.48655 -16.18721 -15.63241 -15.42748 -14.92659 -14.62351 -14.37057 -14.22882 -13.81226 -13.48901 -13.31843 -12.97363 -12.89805 -12.52762 -12.31946 -11.87960 -11.64628 -11.37907 -11.26910 -11.15394 -10.98101 -10.90319 -10.56904 -10.48776 -10.33403 -10.03754 -9.14541 -8.94704 -8.79410 -8.60788 -8.01434 -6.62425 -6.52908 -4.18957 1.55737 2.96287 3.06812 3.12693 3.42396 3.71778 3.85930 3.94588 4.52452 4.64084 4.65487 4.80641 4.87120 5.03918 5.05187 5.12910 5.31201 5.34556 5.50121 5.52411 5.56843 5.76920 5.85882 5.93314 5.98540 6.02927 6.25570 6.30270 6.35814 6.53409 6.62687 6.80082 6.97782 7.06443 7.21649 7.33341 7.90010 8.26341 8.36420 8.69034 8.97758 9.41919 9.71455 10.43252 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.054387 B = 0.003198 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.708886 B = 8754.692290 C = 9116.865741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.045 3.955 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.058 4.058 12 N -0.620 5.620 13 C 0.531 3.469 14 O -0.535 6.535 15 C -0.220 4.220 16 C -0.033 4.033 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.033 4.033 23 N -0.261 5.261 24 H 0.274 0.726 25 H 0.145 0.855 26 H 0.396 0.604 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -17.778 -1.343 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.164 4.164 12 N -0.261 5.261 13 C 0.321 3.679 14 O -0.416 6.416 15 C -0.241 4.241 16 C -0.035 4.035 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.128 4.128 22 C -0.209 4.209 23 N -0.092 5.092 24 H 0.084 0.916 25 H 0.162 0.838 26 H 0.229 0.771 27 H 0.139 0.861 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.178 -16.059 -1.345 16.158 hybrid contribution 1.463 -0.480 0.062 1.541 sum 0.286 -16.539 -1.283 16.591 Atomic orbital electron populations 1.70231 1.06110 1.27799 1.35556 1.25641 0.95706 1.00246 0.95550 0.85768 0.79617 0.80322 0.78448 1.18723 1.19934 1.19941 1.19905 0.91652 0.80574 1.53382 0.86634 1.44546 1.04048 1.03290 1.39302 1.21275 0.96832 0.85428 1.20075 1.17302 0.94290 0.81485 1.23331 1.42473 1.08278 1.04482 1.70841 1.18359 0.84252 0.86889 0.78439 1.90498 1.25182 1.74888 1.51051 1.22302 0.98925 0.92831 1.10014 1.22596 0.95483 0.94693 0.90698 1.21687 0.93110 1.03354 0.97617 1.21675 1.01112 0.94382 0.98284 1.21565 0.96669 0.96551 1.01253 1.21566 0.96815 0.99036 0.97977 1.20934 1.01716 0.91459 0.98692 1.24133 0.98087 0.90681 1.07956 1.78239 0.90131 1.15159 1.25676 0.91564 0.83767 0.77060 0.86063 0.90903 0.85617 0.92114 0.91704 0.92234 0.91968 0.91790 0.91852 0.91043 0.90041 0.80648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.79 11.81 55.50 0.66 -21.13 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 19.14 29.55 -169.99 -5.02 14.12 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 8 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 9 N -0.14 -4.02 3.74 -11.41 -0.04 -4.07 16 10 C -0.09 -2.05 11.49 -16.38 -0.19 -2.24 16 11 C -0.06 -1.38 6.90 -83.87 -0.58 -1.96 16 12 N -0.62 -11.43 5.46 -11.07 -0.06 -11.49 16 13 C 0.53 9.59 7.59 -12.68 -0.10 9.49 16 14 O -0.54 -11.34 10.36 5.24 0.05 -11.29 16 15 C -0.22 -2.96 9.65 -37.81 -0.37 -3.32 16 16 C -0.03 -0.40 5.38 -100.60 -0.54 -0.95 16 17 C -0.12 -1.64 5.32 -27.26 -0.15 -1.78 16 18 C -0.12 -1.28 5.95 -26.41 -0.16 -1.44 16 19 C -0.12 -1.09 5.81 -26.77 -0.16 -1.24 16 20 C -0.12 -0.96 5.94 -26.63 -0.16 -1.12 16 21 C -0.09 -0.83 6.04 -27.48 -0.17 -1.00 16 22 C -0.03 -0.89 10.85 -17.03 -0.18 -1.07 16 23 N -0.26 -7.71 10.39 30.80 0.32 -7.39 16 24 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.14 2.90 8.06 -52.49 -0.42 2.47 16 26 H 0.40 5.69 8.81 -40.82 -0.36 5.33 16 27 H 0.12 1.26 7.96 -52.49 -0.42 0.85 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.13 2.14 4.79 -52.88 -0.25 1.88 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.56 7.92 -51.92 -0.41 0.15 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.18 4.63 5.91 -52.49 -0.31 4.32 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -32.74 314.02 -7.45 -40.19 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -5.10 Total: 10.67 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.98 Total: -14.34 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.87 Total: -44.08 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.05 Total: -11.29 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.74 -7.45 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139272945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.609 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds