Wall clock time and date at job start Mon Mar 30 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86791 * 120.00057 * 2 1 4 4 H 1.48499 * 109.47456 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46934 * 299.99644 * 3 2 1 6 6 H 1.48501 * 109.47633 * 59.99345 * 3 2 1 7 7 C 1.38993 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.37316 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.36499 * 126.06390 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50441 * 180.02562 * 10 9 7 12 12 N 1.40511 * 126.08696 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99805 * 180.02562 * 12 11 10 14 14 O 1.21645 * 120.00260 * 0.02562 * 13 12 11 15 15 C 1.47078 * 119.99742 * 179.97438 * 13 12 11 16 16 C 1.33011 * 119.99868 * 186.99106 * 15 13 12 17 17 C 1.51267 * 120.85041 * 12.17935 * 16 15 13 18 18 C 1.53660 * 108.30936 * 128.62244 * 17 16 15 19 19 C 1.52956 * 109.32796 * 54.85746 * 18 17 16 20 20 C 1.52965 * 109.82137 * 296.27542 * 19 18 17 21 21 C 1.51276 * 120.84842 * 192.46656 * 16 15 13 22 22 C 1.40671 * 107.82880 * 359.97438 * 11 10 9 23 23 N 1.30907 * 108.38564 * 0.02562 * 22 11 10 24 24 H 0.96999 * 119.99844 * 0.02562 * 1 2 3 25 25 H 1.08001 * 126.24445 * 0.04812 * 10 9 7 26 26 H 0.96994 * 119.99879 * 0.02562 * 12 11 10 27 27 H 1.07996 * 120.00025 * 6.99079 * 15 13 12 28 28 H 1.08999 * 109.62645 * 248.38629 * 17 16 15 29 29 H 1.08997 * 109.62652 * 8.96373 * 17 16 15 30 30 H 1.09001 * 109.62670 * 294.84088 * 18 17 16 31 31 H 1.08999 * 109.41861 * 174.75357 * 18 17 16 32 32 H 1.08996 * 109.41888 * 176.16595 * 19 18 17 33 33 H 1.09004 * 109.41599 * 56.37850 * 19 18 17 34 34 H 1.08993 * 109.47933 * 303.62034 * 20 19 18 35 35 H 1.08990 * 109.48380 * 183.57300 * 20 19 18 36 36 H 1.09007 * 109.62274 * 351.03127 * 21 16 15 37 37 H 1.08994 * 109.63152 * 111.60610 * 21 16 15 38 38 H 1.07996 * 125.80968 * 179.73928 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0015 11 6 0.8577 -4.5386 0.0006 12 7 0.9887 -5.9376 0.0006 13 6 -0.1105 -6.7173 -0.0010 14 8 -1.2161 -6.2100 -0.0029 15 6 0.0267 -8.1817 -0.0015 16 6 -1.0495 -8.9504 -0.1432 17 6 -2.3733 -8.3596 -0.5753 18 6 -2.9036 -9.1795 -1.7618 19 6 -2.9717 -10.6557 -1.3670 20 6 -1.5644 -11.1805 -1.0770 21 6 -0.9825 -10.4368 0.1298 22 6 -0.3515 -3.8197 -0.0005 23 7 -0.0715 -2.5409 -0.0007 24 1 -0.4850 0.8400 -0.0004 25 1 2.9302 -3.8708 0.0032 26 1 1.8703 -6.3421 0.0017 27 1 1.0012 -8.6328 0.1131 28 1 -3.0823 -8.4061 0.2513 29 1 -2.2296 -7.3231 -0.8802 30 1 -2.2360 -9.0620 -2.6155 31 1 -3.9003 -8.8282 -2.0285 32 1 -3.4111 -11.2292 -2.1830 33 1 -3.5895 -10.7642 -0.4756 34 1 -0.9286 -11.0156 -1.9468 35 1 -1.6121 -12.2471 -0.8582 36 1 0.0554 -10.7353 0.2781 37 1 -1.5649 -10.6721 1.0205 38 1 -1.3422 -4.2496 -0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139272945.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:57 Heat of formation + Delta-G solvation = 31.535372 kcal Electronic energy + Delta-G solvation = -20459.439529 eV Core-core repulsion = 17302.792893 eV Total energy + Delta-G solvation = -3156.646636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71688 -40.54840 -38.77284 -35.91839 -34.94388 -33.59801 -32.21781 -31.81984 -29.87126 -27.83986 -26.54683 -23.83734 -23.25509 -22.67914 -21.44268 -21.16998 -19.50418 -19.26438 -17.57339 -17.37683 -17.00085 -16.25321 -15.98502 -15.63099 -15.32423 -15.16703 -15.03255 -14.76295 -14.43613 -14.17235 -13.57459 -13.47465 -13.30737 -13.14441 -12.93323 -12.82037 -12.73612 -12.03360 -12.02322 -11.81287 -11.70597 -11.50952 -11.14359 -10.99675 -10.81498 -10.18486 -10.08603 -9.85600 -8.47511 -8.46818 -6.23385 0.42545 1.29181 1.39838 1.59132 1.73967 2.08183 2.14259 2.40568 2.72334 2.96076 3.09479 3.79981 3.84599 4.08791 4.10978 4.24186 4.38586 4.43621 4.50417 4.54664 4.63550 4.68239 4.83926 5.00392 5.02629 5.04510 5.12844 5.17662 5.22258 5.22850 5.30119 5.37371 5.47889 5.54819 5.66599 5.84801 5.97167 6.34349 6.74878 6.85523 7.45621 7.51705 7.69968 8.52988 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.054387 B = 0.003198 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.708886 B = 8754.692290 C = 9116.865741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.021 2.979 4 H -0.240 1.240 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.169 5.169 10 C -0.084 4.084 11 C -0.043 4.043 12 N -0.615 5.615 13 C 0.523 3.477 14 O -0.573 6.573 15 C -0.231 4.231 16 C -0.019 4.019 17 C -0.128 4.128 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.087 4.087 22 C -0.061 4.061 23 N -0.311 5.311 24 H 0.276 0.724 25 H 0.187 0.813 26 H 0.419 0.581 27 H 0.161 0.839 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 -20.218 -1.285 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.220 4.220 3 Si 0.840 3.160 4 H -0.163 1.163 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.061 4.939 10 C -0.234 4.234 11 C -0.150 4.150 12 N -0.259 5.259 13 C 0.316 3.684 14 O -0.456 6.456 15 C -0.252 4.252 16 C -0.021 4.021 17 C -0.165 4.165 18 C -0.152 4.152 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.124 4.124 22 C -0.236 4.236 23 N -0.143 5.143 24 H 0.086 0.914 25 H 0.204 0.796 26 H 0.256 0.744 27 H 0.179 0.821 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.119 -18.566 -1.289 18.644 hybrid contribution 0.642 0.100 0.024 0.650 sum 1.761 -18.466 -1.265 18.593 Atomic orbital electron populations 1.70414 1.08467 1.28997 1.37500 1.26910 0.96499 1.04395 0.94165 0.84515 0.79035 0.74303 0.78191 1.16291 1.19761 1.19773 1.20660 0.92955 0.80893 1.53979 0.84172 1.44848 1.03620 1.04819 1.40567 1.22006 0.98796 0.84257 1.18310 1.17393 0.92821 0.83995 1.20763 1.42446 1.09906 1.02262 1.71285 1.19305 0.83388 0.88920 0.76804 1.90520 1.26748 1.76120 1.52211 1.22304 1.01232 0.89509 1.12135 1.22964 0.94131 0.96886 0.88163 1.21595 0.94430 1.01868 0.98591 1.21647 1.00724 0.95958 0.96854 1.21564 0.97701 0.94576 1.01974 1.21586 0.95894 1.00239 0.97451 1.21036 1.03562 0.88348 0.99482 1.24179 0.99077 0.90890 1.09463 1.78129 0.92056 1.16618 1.27490 0.91440 0.79553 0.74435 0.82130 0.91251 0.89545 0.92647 0.91830 0.90766 0.91575 0.91868 0.89405 0.88780 0.88933 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.66 11.81 21.66 0.26 -48.40 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 3 Si 1.02 39.26 29.55 68.60 2.03 41.29 16 4 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.35 -19.13 10.25 84.02 0.86 -18.27 16 8 H 0.14 6.57 7.83 -2.91 -0.02 6.54 16 9 N -0.17 -9.66 3.74 -190.00 -0.71 -10.37 16 10 C -0.08 -3.98 11.49 83.38 0.96 -3.03 16 11 C -0.04 -2.07 6.90 37.75 0.26 -1.81 16 12 N -0.62 -22.21 5.46 -307.19 -1.68 -23.89 16 13 C 0.52 18.92 7.59 86.56 0.66 19.58 16 14 O -0.57 -25.47 10.36 -4.17 -0.04 -25.51 16 15 C -0.23 -5.75 9.65 23.43 0.23 -5.53 16 16 C -0.02 -0.44 5.38 -17.25 -0.09 -0.54 16 17 C -0.13 -3.49 5.32 30.25 0.16 -3.33 16 18 C -0.11 -2.43 5.95 30.80 0.18 -2.24 16 19 C -0.12 -1.82 5.81 30.57 0.18 -1.64 16 20 C -0.11 -1.44 5.94 30.66 0.18 -1.26 16 21 C -0.09 -1.26 6.04 30.11 0.18 -1.08 16 22 C -0.06 -3.44 10.85 85.42 0.93 -2.51 16 23 N -0.31 -19.30 10.39 -56.45 -0.59 -19.89 16 24 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.19 7.01 8.06 -2.91 -0.02 6.99 16 26 H 0.42 11.07 8.81 -92.71 -0.82 10.25 16 27 H 0.16 2.69 7.96 -2.91 -0.02 2.67 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 3.12 4.79 -17.42 -0.08 3.04 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.00 7.92 -2.38 -0.02 0.98 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.17 9.49 5.91 -2.91 -0.02 9.47 16 Total: -1.00 -76.66 314.02 4.61 -72.06 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: 0.19 Total: 36.35 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.15 Total: -21.63 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -2.72 Total: -102.55 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -76.66 4.61 -72.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139272945.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.593 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds