Wall clock time and date at job start Mon Mar 30 2020 02:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48502 * 109.47388 * 270.00617 * 3 2 1 5 5 H 1.48496 * 109.47357 * 30.00507 * 3 2 1 6 6 H 1.48502 * 109.46994 * 150.00651 * 3 2 1 7 7 C 1.37876 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99669 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00606 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47557 * 177.03288 * 9 7 2 11 11 C 1.46900 * 110.99911 * 288.21168 * 10 9 7 12 12 C 1.53001 * 109.47118 * 160.77007 * 11 10 9 13 13 N 1.46498 * 109.47006 * 184.02938 * 12 11 10 14 14 C 1.36885 * 126.39621 * 90.00339 * 13 12 11 15 15 C 1.34668 * 106.81943 * 179.97438 * 14 13 12 16 16 N 1.34134 * 108.02074 * 359.97438 * 15 14 13 17 17 C 1.30503 * 109.25079 * 359.72794 * 16 15 14 18 18 C 1.46899 * 111.00166 * 164.25811 * 10 9 7 19 19 C 1.50700 * 109.46836 * 293.95224 * 18 10 9 20 20 C 1.34515 * 125.78854 * 90.00354 * 19 18 10 21 21 C 1.41380 * 106.84176 * 180.02562 * 20 19 18 22 22 C 1.34516 * 106.84037 * 359.97438 * 21 20 19 23 23 O 1.34303 * 125.79141 * 269.69542 * 19 18 10 24 24 H 0.97000 * 119.99681 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47194 * 57.03416 * 9 7 2 26 26 H 1.09002 * 109.47352 * 297.03407 * 9 7 2 27 27 H 1.09003 * 109.47314 * 280.77192 * 11 10 9 28 28 H 1.09004 * 109.47126 * 40.77130 * 11 10 9 29 29 H 1.09001 * 109.47261 * 304.02916 * 12 11 10 30 30 H 1.08999 * 109.46726 * 64.03126 * 12 11 10 31 31 H 1.08004 * 126.59235 * 359.96115 * 14 13 12 32 32 H 1.08002 * 125.99507 * 179.97438 * 15 14 13 33 33 H 1.08004 * 125.64374 * 180.29042 * 17 16 15 34 34 H 1.08998 * 109.47026 * 53.95350 * 18 10 9 35 35 H 1.09003 * 109.46903 * 173.95440 * 18 10 9 36 36 H 1.07998 * 126.58009 * 359.96399 * 20 19 18 37 37 H 1.08003 * 126.58117 * 179.97438 * 21 20 19 38 38 H 1.08001 * 125.79011 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0013 -2.5772 0.0701 11 6 3.7732 -3.1484 1.4041 12 6 3.8360 -4.6750 1.3228 13 7 3.5137 -5.2474 2.6323 14 6 2.2686 -5.5940 3.0830 15 6 2.4263 -6.0783 4.3297 16 7 3.7322 -6.0293 4.6317 17 6 4.3904 -5.5384 3.6174 18 6 5.4211 -2.6527 -0.2991 19 6 5.5820 -2.2898 -1.7529 20 6 5.7934 -1.0523 -2.2361 21 6 5.8819 -1.1711 -3.6421 22 6 5.7199 -2.4742 -3.9340 23 8 5.5444 -3.1478 -2.7855 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6351 0.8611 26 1 3.8746 -0.7268 -0.9165 27 1 4.5410 -2.7892 2.0894 28 1 2.7913 -2.8440 1.7667 29 1 3.1168 -5.0294 0.5844 30 1 4.8397 -4.9821 1.0291 31 1 1.3383 -5.4975 2.5428 32 1 1.6393 -6.4424 4.9735 33 1 5.4589 -5.3870 3.5741 34 1 5.9935 -1.9571 0.3145 35 1 5.7857 -3.6668 -0.1353 36 1 5.8782 -0.1425 -1.6605 37 1 6.0479 -0.3695 -4.3466 38 1 5.7335 -2.9061 -4.9238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153086256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:46 Heat of formation + Delta-G solvation = 93.395517 kcal Electronic energy + Delta-G solvation = -20896.447032 eV Core-core repulsion = 17742.482854 eV Total energy + Delta-G solvation = -3153.964178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.26967 -41.80179 -37.53178 -34.06561 -32.74038 -32.55272 -30.51547 -29.40428 -28.84434 -27.19755 -24.80695 -22.84540 -21.50375 -21.11896 -20.82326 -20.58410 -19.86343 -17.25331 -17.16639 -16.90218 -15.93971 -15.20862 -14.99779 -14.81319 -14.19634 -14.05901 -13.72952 -13.63119 -13.36410 -13.07089 -12.87254 -12.59975 -12.48078 -12.34921 -12.30829 -11.70920 -11.31126 -10.94772 -10.66961 -10.53023 -10.04149 -9.81987 -9.64974 -9.41765 -9.39370 -8.66026 -8.32928 -8.23321 -7.73393 -6.14647 -4.12639 1.98095 2.27397 2.84495 3.00601 3.21016 3.26157 3.27647 3.29071 3.35751 4.32741 4.54790 4.80787 4.85554 4.93469 5.13086 5.17177 5.19978 5.27117 5.29340 5.45144 5.49468 5.58584 5.63639 5.80048 5.95145 6.05347 6.17017 6.27532 6.33789 6.48356 6.66105 6.71406 6.75388 6.92464 7.35635 7.38662 7.44547 7.59113 7.73781 8.24207 8.50604 8.92518 9.46236 10.98306 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.006253 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.088220 B = 4476.906995 C = 6280.626704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.156 3.844 10 N -0.520 5.520 11 C 0.050 3.950 12 C 0.106 3.894 13 N -0.451 5.451 14 C -0.043 4.043 15 C -0.041 4.041 16 N -0.502 5.502 17 C 0.173 3.827 18 C 0.125 3.875 19 C 0.014 3.986 20 C -0.207 4.207 21 C -0.212 4.212 22 C -0.049 4.049 23 O -0.170 6.170 24 H 0.265 0.735 25 H -0.007 1.007 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.175 0.825 32 H 0.166 0.834 33 H 0.199 0.801 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.606 -6.960 -1.734 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.098 0.902 9 C 0.030 3.970 10 N -0.245 5.245 11 C -0.079 4.079 12 C -0.016 4.016 13 N -0.133 5.133 14 C -0.177 4.177 15 C -0.189 4.189 16 N -0.221 5.221 17 C -0.110 4.110 18 C -0.003 4.003 19 C -0.037 4.037 20 C -0.227 4.227 21 C -0.231 4.231 22 C -0.117 4.117 23 O -0.066 6.066 24 H 0.075 0.925 25 H 0.010 0.990 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.192 0.808 32 H 0.184 0.816 33 H 0.216 0.784 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 11.513 -7.608 -1.434 13.873 hybrid contribution 0.377 2.132 -0.516 2.226 sum 11.890 -5.476 -1.951 13.235 Atomic orbital electron populations 1.69878 1.06085 1.26937 1.50625 1.24861 0.94714 0.98758 0.94735 0.86934 0.80336 0.84250 0.78728 1.19984 1.21070 1.19274 1.20932 0.88415 0.94728 1.50820 0.90173 1.20378 0.97497 0.83011 0.96118 1.61838 1.12835 1.24185 1.25649 1.22303 1.03722 0.91701 0.90130 1.21998 1.03027 0.95071 0.81542 1.45586 1.07419 1.45695 1.14589 1.22863 0.89382 1.07138 0.98330 1.22239 0.93943 1.07314 0.95362 1.70240 1.05216 1.19892 1.26705 1.24881 0.97578 1.03642 0.84865 1.20546 0.91814 1.01530 0.86422 1.22168 1.03760 0.88267 0.89471 1.21560 1.08676 0.97700 0.94792 1.21757 1.08355 0.97014 0.95985 1.23892 1.06701 0.91861 0.89216 1.83986 1.70125 1.38040 1.14448 0.92550 0.98972 0.94419 0.94915 0.88033 0.87930 0.89556 0.80798 0.81645 0.78414 0.92246 0.89979 0.83978 0.83860 0.78498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 20.89 27.53 -169.99 -4.68 16.21 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.14 6.46 56.52 0.36 -5.77 16 7 C -0.51 -13.83 8.86 -34.44 -0.31 -14.13 16 8 H 0.08 2.37 8.00 -52.48 -0.42 1.95 16 9 C 0.16 3.51 3.67 -4.98 -0.02 3.49 16 10 N -0.52 -9.60 4.38 -237.51 -1.04 -10.64 16 11 C 0.05 0.82 5.15 -3.82 -0.02 0.80 16 12 C 0.11 1.40 6.19 -4.04 -0.03 1.37 16 13 N -0.45 -6.21 2.75 -118.57 -0.33 -6.54 16 14 C -0.04 -0.61 11.58 -16.56 -0.19 -0.80 16 15 C -0.04 -0.59 11.87 -17.81 -0.21 -0.80 16 16 N -0.50 -7.90 11.25 -14.66 -0.16 -8.07 16 17 C 0.17 2.35 12.56 -90.37 -1.14 1.21 16 18 C 0.12 1.88 5.33 -4.98 -0.03 1.85 16 19 C 0.01 0.23 6.28 -35.62 -0.22 0.01 16 20 C -0.21 -3.38 9.12 -39.70 -0.36 -3.74 16 21 C -0.21 -3.05 10.91 -39.70 -0.43 -3.48 16 22 C -0.05 -0.66 12.09 29.42 0.36 -0.30 16 23 O -0.17 -2.73 10.65 5.71 0.06 -2.67 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H -0.01 -0.17 6.90 -51.93 -0.36 -0.53 16 26 H 0.04 0.87 5.09 -51.93 -0.26 0.60 16 27 H 0.03 0.50 8.01 -51.93 -0.42 0.08 16 28 H 0.10 2.00 7.08 -51.93 -0.37 1.63 16 29 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.09 0.93 6.89 -51.93 -0.36 0.57 16 31 H 0.17 2.19 8.06 -52.48 -0.42 1.76 16 32 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.20 1.98 8.06 -52.48 -0.42 1.56 16 34 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 35 H 0.08 1.01 6.67 -51.93 -0.35 0.67 16 36 H 0.14 2.24 7.95 -52.49 -0.42 1.82 16 37 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.20 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -32.63 321.71 -8.30 -40.93 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.08 Total: 4.55 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -2.69 Total: -12.61 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.76 Total: -51.26 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: 0.06 Total: -2.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.68 Total: 16.21 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.63 -8.30 -40.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153086256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.324 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds