Wall clock time and date at job start Mon Mar 30 2020 02:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48502 * 109.47388 * 270.00617 * 3 2 1 5 5 H 1.48496 * 109.47357 * 30.00507 * 3 2 1 6 6 H 1.48502 * 109.46994 * 150.00651 * 3 2 1 7 7 C 1.37876 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99669 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00606 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47557 * 177.03288 * 9 7 2 11 11 C 1.46900 * 110.99911 * 288.21168 * 10 9 7 12 12 C 1.53001 * 109.47118 * 160.77007 * 11 10 9 13 13 N 1.46498 * 109.47006 * 184.02938 * 12 11 10 14 14 C 1.36885 * 126.39621 * 90.00339 * 13 12 11 15 15 C 1.34668 * 106.81943 * 179.97438 * 14 13 12 16 16 N 1.34134 * 108.02074 * 359.97438 * 15 14 13 17 17 C 1.30503 * 109.25079 * 359.72794 * 16 15 14 18 18 C 1.46899 * 111.00166 * 164.25811 * 10 9 7 19 19 C 1.50700 * 109.46836 * 293.95224 * 18 10 9 20 20 C 1.34515 * 125.78854 * 90.00354 * 19 18 10 21 21 C 1.41380 * 106.84176 * 180.02562 * 20 19 18 22 22 C 1.34516 * 106.84037 * 359.97438 * 21 20 19 23 23 O 1.34303 * 125.79141 * 269.69542 * 19 18 10 24 24 H 0.97000 * 119.99681 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47194 * 57.03416 * 9 7 2 26 26 H 1.09002 * 109.47352 * 297.03407 * 9 7 2 27 27 H 1.09003 * 109.47314 * 280.77192 * 11 10 9 28 28 H 1.09004 * 109.47126 * 40.77130 * 11 10 9 29 29 H 1.09001 * 109.47261 * 304.02916 * 12 11 10 30 30 H 1.08999 * 109.46726 * 64.03126 * 12 11 10 31 31 H 1.08004 * 126.59235 * 359.96115 * 14 13 12 32 32 H 1.08002 * 125.99507 * 179.97438 * 15 14 13 33 33 H 1.08004 * 125.64374 * 180.29042 * 17 16 15 34 34 H 1.08998 * 109.47026 * 53.95350 * 18 10 9 35 35 H 1.09003 * 109.46903 * 173.95440 * 18 10 9 36 36 H 1.07998 * 126.58009 * 359.96399 * 20 19 18 37 37 H 1.08003 * 126.58117 * 179.97438 * 21 20 19 38 38 H 1.08001 * 125.79011 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0013 -2.5772 0.0701 11 6 3.7732 -3.1484 1.4041 12 6 3.8360 -4.6750 1.3228 13 7 3.5137 -5.2474 2.6323 14 6 2.2686 -5.5940 3.0830 15 6 2.4263 -6.0783 4.3297 16 7 3.7322 -6.0293 4.6317 17 6 4.3904 -5.5384 3.6174 18 6 5.4211 -2.6527 -0.2991 19 6 5.5820 -2.2898 -1.7529 20 6 5.7934 -1.0523 -2.2361 21 6 5.8819 -1.1711 -3.6421 22 6 5.7199 -2.4742 -3.9340 23 8 5.5444 -3.1478 -2.7855 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6351 0.8611 26 1 3.8746 -0.7268 -0.9165 27 1 4.5410 -2.7892 2.0894 28 1 2.7913 -2.8440 1.7667 29 1 3.1168 -5.0294 0.5844 30 1 4.8397 -4.9821 1.0291 31 1 1.3383 -5.4975 2.5428 32 1 1.6393 -6.4424 4.9735 33 1 5.4589 -5.3870 3.5741 34 1 5.9935 -1.9571 0.3145 35 1 5.7857 -3.6668 -0.1353 36 1 5.8782 -0.1425 -1.6605 37 1 6.0479 -0.3695 -4.3466 38 1 5.7335 -2.9061 -4.9238 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153086256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:45 Heat of formation + Delta-G solvation = 73.099457 kcal Electronic energy + Delta-G solvation = -20897.327135 eV Core-core repulsion = 17742.482854 eV Total energy + Delta-G solvation = -3154.844282 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.39355 -42.88412 -38.93268 -35.31778 -34.62264 -33.79138 -31.74145 -30.77106 -30.18926 -28.54671 -26.15108 -24.38692 -22.64052 -22.27556 -22.20423 -21.67938 -21.10590 -19.05183 -18.39679 -18.14302 -17.19355 -16.58147 -16.34507 -16.20754 -15.58108 -15.32149 -14.95569 -14.88274 -14.70312 -14.34186 -14.23423 -14.04082 -13.77396 -13.64204 -13.44731 -13.16053 -12.83043 -12.47639 -12.34429 -11.96294 -11.91236 -11.52804 -10.94682 -10.84550 -10.72082 -10.53610 -9.43138 -9.40744 -9.13551 -8.30493 -6.32623 0.84598 1.18577 1.31375 1.31868 1.40997 1.72787 1.92416 2.19843 2.25661 2.30724 3.03817 3.21942 3.74017 3.84407 3.90551 4.00061 4.09603 4.17307 4.22326 4.33797 4.39221 4.47246 4.54031 4.65661 4.77541 4.84579 4.95816 4.98908 5.01880 5.06720 5.27593 5.40802 5.52261 5.65499 5.83540 5.85520 6.16966 6.29568 6.35315 6.51970 6.73158 7.15739 7.30146 8.86020 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.006253 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.088220 B = 4476.906995 C = 6280.626704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.510 4.510 8 H 0.038 0.962 9 C 0.168 3.832 10 N -0.534 5.534 11 C 0.058 3.942 12 C 0.120 3.880 13 N -0.454 5.454 14 C -0.060 4.060 15 C -0.052 4.052 16 N -0.535 5.535 17 C 0.179 3.821 18 C 0.126 3.874 19 C -0.009 4.009 20 C -0.226 4.226 21 C -0.230 4.230 22 C -0.042 4.042 23 O -0.184 6.184 24 H 0.265 0.735 25 H -0.008 1.008 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.236 0.764 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.351 -6.977 -2.372 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.041 3.959 10 N -0.259 5.259 11 C -0.071 4.071 12 C -0.003 4.003 13 N -0.136 5.136 14 C -0.194 4.194 15 C -0.198 4.198 16 N -0.254 5.254 17 C -0.103 4.103 18 C -0.001 4.001 19 C -0.060 4.060 20 C -0.246 4.246 21 C -0.249 4.249 22 C -0.109 4.109 23 O -0.080 6.080 24 H 0.074 0.926 25 H 0.010 0.990 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.141 0.859 31 H 0.197 0.803 32 H 0.199 0.801 33 H 0.252 0.748 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.160 0.840 37 H 0.182 0.818 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 14.274 -7.649 -2.066 16.326 hybrid contribution -0.489 2.051 -0.360 2.139 sum 13.785 -5.599 -2.425 15.075 Atomic orbital electron populations 1.70039 1.08049 1.27941 1.52731 1.25764 0.95498 1.02852 0.94612 0.85873 0.79652 0.79239 0.79226 1.19167 1.21015 1.17093 1.21208 0.91090 0.93074 1.49488 0.94338 1.20053 0.94240 0.85732 0.95839 1.61653 1.15694 1.21609 1.26935 1.22175 1.01702 0.93859 0.89378 1.21874 1.04753 0.92534 0.81119 1.45648 1.07353 1.45758 1.14887 1.23090 0.90079 1.07607 0.98632 1.22589 0.94258 1.07252 0.95740 1.70250 1.05816 1.21396 1.27968 1.25621 0.98914 1.01862 0.83921 1.20679 0.89447 1.03952 0.86038 1.22398 1.04861 0.88544 0.90160 1.21828 1.08886 0.97819 0.96042 1.22107 1.08916 0.98246 0.95647 1.24741 1.04457 0.91773 0.89939 1.83982 1.70352 1.38542 1.15113 0.92559 0.99045 0.94390 0.93315 0.92441 0.88918 0.85930 0.80317 0.80145 0.74830 0.90770 0.86734 0.84049 0.81815 0.74531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.94 43.11 27.53 68.60 1.89 45.00 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.25 -10.46 6.46 99.48 0.64 -9.82 16 7 C -0.51 -28.39 8.86 25.60 0.23 -28.17 16 8 H 0.04 2.40 8.00 -2.91 -0.02 2.37 16 9 C 0.17 7.49 3.67 85.55 0.31 7.80 16 10 N -0.53 -19.10 4.38 -905.35 -3.96 -23.07 16 11 C 0.06 1.82 5.15 86.30 0.44 2.27 16 12 C 0.12 2.93 6.19 86.38 0.54 3.46 16 13 N -0.45 -11.89 2.75 -529.06 -1.46 -13.34 16 14 C -0.06 -1.70 11.58 83.09 0.96 -0.74 16 15 C -0.05 -1.47 11.87 83.52 0.99 -0.48 16 16 N -0.54 -16.21 11.25 -200.30 -2.25 -18.47 16 17 C 0.18 4.47 12.56 180.26 2.26 6.73 16 18 C 0.13 3.45 5.33 85.56 0.46 3.90 16 19 C -0.01 -0.28 6.28 24.83 0.16 -0.12 16 20 C -0.23 -6.94 9.12 22.19 0.20 -6.73 16 21 C -0.23 -6.08 10.91 22.19 0.24 -5.84 16 22 C -0.04 -1.01 12.09 66.97 0.81 -0.20 16 23 O -0.18 -5.46 10.65 -2.48 -0.03 -5.49 16 24 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 25 H -0.01 -0.36 6.90 -2.38 -0.02 -0.38 16 26 H 0.04 1.71 5.09 -2.39 -0.01 1.70 16 27 H 0.05 1.38 8.01 -2.39 -0.02 1.36 16 28 H 0.06 2.33 7.08 -2.38 -0.02 2.32 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.12 2.14 6.89 -2.39 -0.02 2.12 16 31 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.24 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 35 H 0.11 2.36 6.67 -2.39 -0.02 2.34 16 36 H 0.14 4.23 7.95 -2.91 -0.02 4.21 16 37 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.24 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -72.99 321.71 3.54 -69.44 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.99 Total: 21.18 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 8.07 Total: -17.07 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -7.37 Total: -113.05 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.03 Total: -5.49 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.89 Total: 45.00 kcal Total: -72.99 3.54 -69.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153086256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.542 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds