Wall clock time and date at job start Mon Mar 30 2020 01:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42098 * 108.57585 * 2 1 4 4 O 1.42102 * 108.57690 * 228.97585 * 2 1 3 5 5 C 1.81397 * 101.92264 * 114.48750 * 2 1 3 6 6 C 1.52998 * 109.47335 * 180.02562 * 5 2 1 7 7 N 1.46896 * 109.47211 * 180.02562 * 6 5 2 8 8 C 1.46904 * 111.00109 * 169.99694 * 7 6 5 9 9 C 1.53001 * 109.46980 * 285.19380 * 8 7 6 10 10 C 1.53005 * 109.46935 * 185.24138 * 9 8 7 11 11 C 1.50696 * 109.47167 * 179.97438 * 10 9 8 12 12 H 1.08007 * 120.00059 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99411 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00281 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46910 * 60.00505 * 15 13 11 17 17 H 1.48509 * 109.47158 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47203 * 300.00256 * 15 13 11 19 19 C 1.46894 * 111.00179 * 293.95212 * 7 6 5 20 20 C 1.52999 * 117.49966 * 246.75482 * 19 7 6 21 21 C 1.52994 * 60.00171 * 252.50548 * 20 19 7 22 22 H 1.09009 * 109.47079 * 305.51506 * 1 2 3 23 23 H 1.09003 * 109.47545 * 65.50820 * 1 2 3 24 24 H 1.08998 * 109.47307 * 185.51277 * 1 2 3 25 25 H 1.09004 * 109.46794 * 59.99943 * 5 2 1 26 26 H 1.09002 * 109.46905 * 300.00115 * 5 2 1 27 27 H 1.08995 * 109.47104 * 59.99385 * 6 5 2 28 28 H 1.09002 * 109.46710 * 300.00180 * 6 5 2 29 29 H 1.09003 * 109.46622 * 45.19267 * 8 7 6 30 30 H 1.08995 * 109.47326 * 165.19188 * 8 7 6 31 31 H 1.08999 * 109.47009 * 305.23698 * 9 8 7 32 32 H 1.08997 * 109.47386 * 65.24265 * 9 8 7 33 33 H 1.08996 * 109.46698 * 300.00084 * 10 9 8 34 34 H 1.08997 * 109.46980 * 59.99878 * 10 9 8 35 35 H 0.97006 * 120.00026 * 179.97438 * 14 13 11 36 36 H 1.09005 * 115.54678 * 32.46251 * 19 7 6 37 37 H 1.08995 * 117.50007 * 359.97438 * 20 19 7 38 38 H 1.09008 * 117.49755 * 145.01505 * 20 19 7 39 39 H 1.08996 * 117.50381 * 252.51151 * 21 20 19 40 40 H 1.09003 * 117.51444 * 107.47638 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7984 7 7 4.0089 -1.4147 3.1062 8 6 5.4392 -1.7288 3.2224 9 6 5.7575 -2.9726 2.3903 10 6 7.2162 -3.3764 2.6141 11 6 7.5296 -4.6019 1.7950 12 1 6.7649 -5.0479 1.1762 13 6 8.7927 -5.1532 1.8346 14 7 9.7240 -4.6097 2.5877 15 14 9.1810 -6.6726 0.8198 16 1 8.9643 -6.3755 -0.6189 17 1 10.5969 -7.0645 1.0370 18 1 8.2904 -7.7860 1.2350 19 6 3.5723 -0.5361 4.1994 20 6 4.6567 0.0893 5.0791 21 6 3.7776 -1.0346 5.6313 22 1 -0.3634 0.5970 0.8365 23 1 -0.3634 0.4260 -0.9352 24 1 -0.3634 -1.0229 0.0987 25 1 1.7610 -1.7370 1.6664 26 1 1.7610 -0.1171 2.4042 27 1 4.1327 0.1830 1.7473 28 1 4.1335 -1.4367 1.0094 29 1 6.0269 -0.8868 2.8567 30 1 5.6860 -1.9177 4.2671 31 1 5.1036 -3.7901 2.6940 32 1 5.5991 -2.7537 1.3343 33 1 7.8701 -2.5590 2.3105 34 1 7.3746 -3.5954 3.6701 35 1 10.6126 -4.9977 2.6159 36 1 2.6824 0.0598 3.9967 37 1 5.6940 -0.1515 4.8468 38 1 4.4804 1.0971 5.4552 39 1 3.0231 -0.7663 6.3707 40 1 4.2364 -2.0147 5.7621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156894895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:56 Heat of formation + Delta-G solvation = -72.940225 kcal Electronic energy + Delta-G solvation = -19537.431406 eV Core-core repulsion = 16479.405569 eV Total energy + Delta-G solvation = -3058.025837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18985 -37.95692 -37.00418 -36.25596 -35.32926 -33.71621 -31.18743 -30.24239 -28.07102 -25.00896 -24.36929 -23.28357 -22.14404 -20.57842 -19.73841 -18.49601 -17.83037 -17.47467 -17.11180 -16.82626 -16.56680 -16.23620 -15.81561 -15.27549 -14.61995 -14.41942 -14.05347 -13.96490 -13.85708 -13.79333 -13.38817 -13.08978 -13.01450 -12.97662 -12.78270 -12.51472 -12.50159 -12.39744 -12.14500 -11.96945 -11.69196 -11.51336 -11.42562 -11.37217 -11.15790 -11.07871 -10.55640 -9.17918 -8.21003 -6.32130 -0.89730 1.39183 1.42753 1.50597 1.93149 2.40050 2.55522 2.85362 3.12051 3.13020 3.16614 3.58065 3.84409 3.92264 3.99742 4.11224 4.12812 4.16688 4.29022 4.35311 4.48038 4.61837 4.66342 4.75052 4.81118 4.85224 4.99931 5.02554 5.03941 5.12094 5.21672 5.26485 5.49937 5.70323 5.83709 5.96033 6.11093 6.25380 6.83926 7.37067 8.90804 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.004282 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.434517 B = 6537.560258 C = 7871.592821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.420 3.580 3 O -0.987 6.987 4 O -0.992 6.992 5 C -0.596 4.596 6 C 0.052 3.948 7 N -0.501 5.501 8 C 0.060 3.940 9 C -0.092 4.092 10 C 0.027 3.973 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.009 3.991 20 C -0.229 4.229 21 C -0.166 4.166 22 H 0.159 0.841 23 H 0.137 0.863 24 H 0.154 0.846 25 H 0.161 0.839 26 H 0.164 0.836 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.045 0.955 33 H -0.012 1.012 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.025 11.294 1.650 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.607 3.393 3 O -0.984 6.984 4 O -0.989 6.989 5 C -0.725 4.725 6 C -0.077 4.077 7 N -0.223 5.223 8 C -0.067 4.067 9 C -0.130 4.130 10 C -0.011 4.011 11 C -0.583 4.583 12 H 0.076 0.924 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.100 4.100 20 C -0.268 4.268 21 C -0.203 4.203 22 H 0.177 0.823 23 H 0.156 0.844 24 H 0.172 0.828 25 H 0.179 0.821 26 H 0.182 0.818 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.007 0.993 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.501 11.133 1.049 25.127 hybrid contribution 0.973 -0.335 0.124 1.037 sum -21.528 10.799 1.172 24.113 Atomic orbital electron populations 1.30018 1.20337 1.14114 1.13610 1.07487 0.80578 0.74068 0.77133 1.93538 1.81378 1.36448 1.87075 1.93561 1.81381 1.67733 1.56254 1.30345 1.02989 1.16408 1.22776 1.21844 0.93883 0.98993 0.92973 1.61909 1.16743 1.42256 1.01410 1.22178 0.87166 0.96710 1.00672 1.21428 0.96775 0.96460 0.98378 1.18954 0.92093 0.94819 0.95211 1.21653 0.96912 1.12703 1.26998 0.92358 1.25980 0.96179 1.00818 0.96766 1.70092 1.03872 1.42406 1.40992 0.85503 0.77274 0.79182 0.79124 1.19341 1.20613 1.19004 1.22983 1.00197 0.98370 0.88408 1.23622 0.97051 0.99366 1.06751 1.23114 1.03024 0.98097 0.96106 0.82315 0.84416 0.82775 0.82095 0.81841 0.93300 0.90704 0.95281 0.90720 0.92504 0.93607 0.99322 0.98826 0.92730 0.83320 0.90242 0.86909 0.85862 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.80 10.62 113.37 1.20 -1.59 16 2 S 2.42 38.84 5.36 -56.49 -0.30 38.54 16 3 O -0.99 -23.90 18.10 -127.37 -2.30 -26.21 16 4 O -0.99 -26.73 18.10 -127.37 -2.31 -29.04 16 5 C -0.60 -8.39 5.80 71.98 0.42 -7.97 16 6 C 0.05 1.31 4.80 86.30 0.41 1.73 16 7 N -0.50 -13.97 4.66 -871.00 -4.06 -18.02 16 8 C 0.06 2.15 3.62 86.30 0.31 2.46 16 9 C -0.09 -4.02 5.17 30.60 0.16 -3.87 16 10 C 0.03 1.47 4.97 29.85 0.15 1.62 16 11 C -0.54 -32.25 9.11 25.60 0.23 -32.02 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 15 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.01 0.20 5.83 44.92 0.26 0.46 16 20 C -0.23 -5.15 9.56 30.59 0.29 -4.85 16 21 C -0.17 -3.48 9.91 30.59 0.30 -3.18 16 22 H 0.16 -0.17 8.14 -2.39 -0.02 -0.18 16 23 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.16 1.11 6.40 -2.39 -0.02 1.09 16 27 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 28 H 0.07 2.23 6.66 -2.39 -0.02 2.21 16 29 H 0.03 1.06 7.83 -2.39 -0.02 1.04 16 30 H 0.07 2.69 5.60 -2.39 -0.01 2.67 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.05 1.99 6.92 -2.39 -0.02 1.97 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 36 H 0.15 2.15 6.34 -2.38 -0.02 2.13 16 37 H 0.08 2.19 6.03 -2.39 -0.01 2.17 16 38 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.02 7.46 -2.39 -0.02 2.00 16 Total: -1.00 -83.50 335.88 -1.44 -84.95 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.01 Total: 6.85 kcal Atomic # 6 Polarization: -50.94 SS G_CDS: 4.21 Total: -46.73 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -3.77 Total: -75.93 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -4.61 Total: -55.25 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 38.84 SS G_CDS: -0.30 Total: 38.54 kcal Total: -83.50 -1.44 -84.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156894895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.008 kcal (2) G-P(sol) polarization free energy of solvation -83.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds