Wall clock time and date at job start Mon Mar 30 2020 02:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47330 * 240.00563 * 3 2 1 5 5 H 1.48506 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47079 * 120.00319 * 3 2 1 7 7 C 1.37878 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99885 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46854 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99903 * 270.27436 * 10 9 7 12 12 C 1.52998 * 109.47346 * 269.72165 * 11 10 9 13 13 C 1.52997 * 117.50172 * 243.62347 * 12 11 10 14 14 C 1.53001 * 117.49726 * 174.99617 * 12 11 10 15 15 C 1.34781 * 120.00001 * 90.00174 * 10 9 7 16 16 O 1.21580 * 119.99696 * 0.02562 * 15 10 9 17 17 N 1.34776 * 120.00164 * 179.97438 * 15 10 9 18 18 C 1.39537 * 120.00397 * 174.65891 * 17 15 10 19 19 C 1.39400 * 120.85883 * 327.31633 * 18 17 15 20 20 C 1.37933 * 119.07410 * 179.79254 * 19 18 17 21 21 N 1.31974 * 120.84011 * 0.48782 * 20 19 18 22 22 C 1.31968 * 121.88976 * 359.74384 * 21 20 19 23 23 C 1.37938 * 120.84253 * 0.02562 * 22 21 20 24 24 H 0.97007 * 119.99809 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47215 * 60.00502 * 9 7 2 26 26 H 1.08993 * 109.47208 * 300.00322 * 9 7 2 27 27 H 1.08992 * 109.47472 * 29.73262 * 11 10 9 28 28 H 1.09009 * 109.46790 * 149.72613 * 11 10 9 29 29 H 1.09006 * 115.54518 * 29.33904 * 12 11 10 30 30 H 1.08994 * 117.50067 * 359.97438 * 13 12 11 31 31 H 1.09004 * 117.49867 * 145.02547 * 13 12 11 32 32 H 1.08997 * 117.49848 * 214.97998 * 14 12 11 33 33 H 1.08999 * 117.49919 * 0.02562 * 14 12 11 34 34 H 0.97008 * 119.99956 * 354.66574 * 17 15 10 35 35 H 1.08006 * 120.46039 * 0.02562 * 19 18 17 36 36 H 1.08011 * 119.58296 * 180.22983 * 20 19 18 37 37 H 1.08010 * 119.58076 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.46508 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6836 -4.1654 -1.2692 12 6 1.7585 -5.2998 -1.7144 13 6 2.3565 -6.7052 -1.8038 14 6 2.0240 -5.9325 -3.0819 15 6 2.6409 -4.1249 1.1667 16 8 2.2454 -3.6631 2.2196 17 7 3.5163 -5.1496 1.1667 18 6 4.0552 -5.6069 2.3699 19 6 4.2897 -4.7296 3.4275 20 6 4.8196 -5.2221 4.6019 21 7 5.1124 -6.5028 4.7274 22 6 4.9095 -7.3636 3.7478 23 6 4.3785 -6.9517 2.5432 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.6896 -3.3826 -2.0276 28 1 3.6945 -4.5515 -1.1376 29 1 0.7205 -5.2136 -1.3927 30 1 3.4090 -6.8217 -1.5460 31 1 1.7120 -7.5441 -1.5408 32 1 1.1609 -6.2630 -3.6596 33 1 2.8580 -5.5409 -3.6642 34 1 3.7718 -5.5692 0.3303 35 1 4.0562 -3.6797 3.3301 36 1 5.0012 -4.5503 5.4280 37 1 5.1624 -8.4038 3.8912 38 1 4.2154 -7.6613 1.7455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176332644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:33 Heat of formation + Delta-G solvation = 41.437758 kcal Electronic energy + Delta-G solvation = -21076.984651 eV Core-core repulsion = 17920.767415 eV Total energy + Delta-G solvation = -3156.217236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61499 -39.20631 -37.41480 -35.19455 -34.41751 -32.61004 -31.05113 -30.44026 -27.86765 -26.24152 -23.81535 -23.35794 -22.42630 -22.19612 -20.91334 -19.48078 -18.27475 -17.35139 -16.56044 -15.88143 -15.69117 -15.23437 -15.19202 -14.70092 -14.38758 -14.07786 -13.81243 -13.61904 -13.35522 -13.29005 -12.42630 -12.29265 -11.72929 -11.65860 -11.55671 -11.27154 -10.96793 -10.66923 -10.66509 -10.44861 -10.18366 -10.03215 -9.72550 -9.65879 -9.20945 -8.97853 -8.47700 -8.39129 -7.78624 -6.08896 -4.14022 1.28870 1.43454 3.00388 3.29081 3.34062 3.37039 3.63851 3.73983 4.07942 4.25068 4.43079 4.60178 4.77028 4.88170 4.92677 5.05622 5.13677 5.25294 5.27740 5.34921 5.54831 5.58135 5.69184 5.84802 5.85665 5.91700 6.01136 6.05607 6.25361 6.31867 6.59446 6.70535 7.02039 7.26686 7.39679 7.55204 7.87732 8.14447 8.16603 8.42512 8.85450 9.09209 9.51363 10.99031 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.005992 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.660356 B = 4671.938095 C = 6337.100023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.260 3.740 10 N -0.601 5.601 11 C 0.141 3.859 12 C -0.169 4.169 13 C -0.187 4.187 14 C -0.173 4.173 15 C 0.699 3.301 16 O -0.563 6.563 17 N -0.691 5.691 18 C 0.225 3.775 19 C -0.176 4.176 20 C 0.114 3.886 21 N -0.510 5.510 22 C 0.113 3.887 23 C -0.215 4.215 24 H 0.264 0.736 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.404 0.596 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 -14.285 -2.600 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.141 3.859 10 N -0.334 5.334 11 C 0.016 3.984 12 C -0.188 4.188 13 C -0.224 4.224 14 C -0.211 4.211 15 C 0.401 3.599 16 O -0.438 6.438 17 N -0.340 5.340 18 C 0.119 3.881 19 C -0.199 4.199 20 C -0.042 4.042 21 N -0.221 5.221 22 C -0.045 4.045 23 C -0.239 4.239 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.241 0.759 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.171 0.829 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.690 -13.977 -1.136 15.993 hybrid contribution 0.099 0.995 -1.445 1.757 sum 7.790 -12.982 -2.581 15.358 Atomic orbital electron populations 1.69919 1.05984 1.27217 1.50110 1.24913 0.94866 0.99172 0.94968 0.86558 0.79523 0.82704 0.78622 1.20269 1.21141 1.20175 1.21383 0.93314 0.90630 1.51516 0.92522 1.19278 0.86772 0.81149 0.98664 1.47581 1.47732 1.35987 1.02121 1.21012 0.94389 0.95140 0.87871 1.23003 1.01689 0.93673 1.00456 1.23046 1.01146 0.95430 1.02814 1.22903 1.03476 1.04032 0.90640 1.15934 0.79220 0.79374 0.85383 1.90923 1.60529 1.62426 1.29924 1.42999 1.46561 1.36753 1.07677 1.17835 0.91420 0.92006 0.86808 1.22325 1.00992 1.02363 0.94202 1.22612 0.93623 0.91740 0.96230 1.67657 1.18714 1.03668 1.32056 1.22439 0.94588 0.99195 0.88231 1.21821 1.07375 0.94037 1.00644 0.92591 0.94606 0.93650 0.88759 0.92181 0.87109 0.89223 0.88943 0.88803 0.88636 0.75912 0.83157 0.82703 0.82929 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.26 6.55 5.16 -5.20 -0.03 6.52 16 10 N -0.60 -12.14 2.46 -180.81 -0.44 -12.58 16 11 C 0.14 2.13 5.40 -4.04 -0.02 2.11 16 12 C -0.17 -2.18 6.01 -90.62 -0.54 -2.73 16 13 C -0.19 -1.87 9.82 -26.73 -0.26 -2.13 16 14 C -0.17 -1.76 10.25 -26.73 -0.27 -2.04 16 15 C 0.70 14.36 8.04 -86.91 -0.70 13.66 16 16 O -0.56 -13.93 13.63 5.30 0.07 -13.85 16 17 N -0.69 -10.89 5.18 -14.07 -0.07 -10.96 16 18 C 0.23 3.48 6.33 -83.49 -0.53 2.95 16 19 C -0.18 -2.92 8.73 -39.26 -0.34 -3.26 16 20 C 0.11 1.66 11.17 -17.60 -0.20 1.46 16 21 N -0.51 -7.34 10.36 -13.34 -0.14 -7.47 16 22 C 0.11 1.38 11.17 -17.60 -0.20 1.18 16 23 C -0.22 -2.66 10.06 -39.26 -0.39 -3.05 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 27 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 28 H 0.06 0.76 6.19 -51.92 -0.32 0.44 16 29 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.09 0.76 7.66 -51.93 -0.40 0.37 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 5.10 5.89 -40.82 -0.24 4.86 16 35 H 0.15 2.84 6.48 -52.48 -0.34 2.50 16 36 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 37 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -32.44 325.41 -8.90 -41.34 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.03 Total: 5.95 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -3.91 Total: 1.48 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.08 Total: -56.27 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.07 Total: -13.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.44 -8.90 -41.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176332644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.781 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds