Wall clock time and date at job start Mon Mar 30 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47330 * 240.00563 * 3 2 1 5 5 H 1.48506 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47079 * 120.00319 * 3 2 1 7 7 C 1.37878 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99885 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46854 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99903 * 270.27436 * 10 9 7 12 12 C 1.52998 * 109.47346 * 269.72165 * 11 10 9 13 13 C 1.52997 * 117.50172 * 243.62347 * 12 11 10 14 14 C 1.53001 * 117.49726 * 174.99617 * 12 11 10 15 15 C 1.34781 * 120.00001 * 90.00174 * 10 9 7 16 16 O 1.21580 * 119.99696 * 0.02562 * 15 10 9 17 17 N 1.34776 * 120.00164 * 179.97438 * 15 10 9 18 18 C 1.39537 * 120.00397 * 174.65891 * 17 15 10 19 19 C 1.39400 * 120.85883 * 327.31633 * 18 17 15 20 20 C 1.37933 * 119.07410 * 179.79254 * 19 18 17 21 21 N 1.31974 * 120.84011 * 0.48782 * 20 19 18 22 22 C 1.31968 * 121.88976 * 359.74384 * 21 20 19 23 23 C 1.37938 * 120.84253 * 0.02562 * 22 21 20 24 24 H 0.97007 * 119.99809 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47215 * 60.00502 * 9 7 2 26 26 H 1.08993 * 109.47208 * 300.00322 * 9 7 2 27 27 H 1.08992 * 109.47472 * 29.73262 * 11 10 9 28 28 H 1.09009 * 109.46790 * 149.72613 * 11 10 9 29 29 H 1.09006 * 115.54518 * 29.33904 * 12 11 10 30 30 H 1.08994 * 117.50067 * 359.97438 * 13 12 11 31 31 H 1.09004 * 117.49867 * 145.02547 * 13 12 11 32 32 H 1.08997 * 117.49848 * 214.97998 * 14 12 11 33 33 H 1.08999 * 117.49919 * 0.02562 * 14 12 11 34 34 H 0.97008 * 119.99956 * 354.66574 * 17 15 10 35 35 H 1.08006 * 120.46039 * 0.02562 * 19 18 17 36 36 H 1.08011 * 119.58296 * 180.22983 * 20 19 18 37 37 H 1.08010 * 119.58076 * 180.02562 * 22 21 20 38 38 H 1.07998 * 120.46508 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.6836 -4.1654 -1.2692 12 6 1.7585 -5.2998 -1.7144 13 6 2.3565 -6.7052 -1.8038 14 6 2.0240 -5.9325 -3.0819 15 6 2.6409 -4.1249 1.1667 16 8 2.2454 -3.6631 2.2196 17 7 3.5163 -5.1496 1.1667 18 6 4.0552 -5.6069 2.3699 19 6 4.2897 -4.7296 3.4275 20 6 4.8196 -5.2221 4.6019 21 7 5.1124 -6.5028 4.7274 22 6 4.9095 -7.3636 3.7478 23 6 4.3785 -6.9517 2.5432 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.6896 -3.3826 -2.0276 28 1 3.6945 -4.5515 -1.1376 29 1 0.7205 -5.2136 -1.3927 30 1 3.4090 -6.8217 -1.5460 31 1 1.7120 -7.5441 -1.5408 32 1 1.1609 -6.2630 -3.6596 33 1 2.8580 -5.5409 -3.6642 34 1 3.7718 -5.5692 0.3303 35 1 4.0562 -3.6797 3.3301 36 1 5.0012 -4.5503 5.4280 37 1 5.1624 -8.4038 3.8912 38 1 4.2154 -7.6613 1.7455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176332644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:32 Heat of formation + Delta-G solvation = 21.015426 kcal Electronic energy + Delta-G solvation = -21077.870230 eV Core-core repulsion = 17920.767415 eV Total energy + Delta-G solvation = -3157.102815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.96756 -40.48202 -38.51176 -36.64793 -35.98279 -34.62142 -32.12498 -31.75880 -29.62934 -27.72306 -25.50353 -24.51088 -23.67814 -23.21840 -22.05551 -20.88326 -19.64003 -18.71653 -18.59485 -17.15631 -17.00641 -16.71391 -16.46424 -16.02115 -15.91837 -15.20718 -15.10214 -14.88275 -14.67588 -14.48452 -14.30688 -13.78441 -13.27976 -12.96632 -12.85626 -12.66775 -12.57184 -12.31014 -12.22550 -11.98453 -11.77730 -11.41156 -11.26032 -10.82586 -10.64522 -10.43673 -10.07136 -9.80642 -9.36922 -8.22916 -6.37618 0.20951 0.27428 1.36477 1.40510 1.47186 1.58563 2.10082 2.37876 2.74222 2.94970 3.04136 3.08263 3.63202 3.78791 3.91046 3.96183 4.04131 4.09356 4.21958 4.28615 4.46659 4.62923 4.74292 4.79206 4.81389 4.89959 4.95641 5.05202 5.12379 5.20103 5.26835 5.30937 5.41942 5.51553 5.73848 5.84968 5.98567 6.03807 6.70417 6.93062 7.07285 7.28857 7.52432 8.83822 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.005992 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.660356 B = 4671.938095 C = 6337.100023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.280 3.720 10 N -0.605 5.605 11 C 0.140 3.860 12 C -0.198 4.198 13 C -0.166 4.166 14 C -0.158 4.158 15 C 0.696 3.304 16 O -0.615 6.615 17 N -0.670 5.670 18 C 0.200 3.800 19 C -0.202 4.202 20 C 0.112 3.888 21 N -0.521 5.521 22 C 0.116 3.884 23 C -0.196 4.196 24 H 0.267 0.733 25 H 0.027 0.973 26 H -0.001 1.001 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.420 0.580 35 H 0.115 0.885 36 H 0.170 0.830 37 H 0.197 0.803 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.080 -16.665 -3.740 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.158 3.842 10 N -0.338 5.338 11 C 0.017 3.983 12 C -0.218 4.218 13 C -0.203 4.203 14 C -0.196 4.196 15 C 0.398 3.602 16 O -0.494 6.494 17 N -0.320 5.320 18 C 0.096 3.904 19 C -0.225 4.225 20 C -0.044 4.044 21 N -0.233 5.233 22 C -0.041 4.041 23 C -0.219 4.219 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.261 0.739 35 H 0.133 0.867 36 H 0.187 0.813 37 H 0.213 0.787 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.927 -16.419 -2.322 19.327 hybrid contribution -0.576 1.615 -1.062 2.017 sum 9.352 -14.805 -3.384 17.835 Atomic orbital electron populations 1.70041 1.07515 1.28238 1.50832 1.25805 0.95745 1.02873 0.94394 0.85501 0.78331 0.78245 0.78924 1.18459 1.20349 1.20485 1.21655 0.93222 0.91875 1.51462 0.92918 1.18669 0.87094 0.82521 0.95879 1.47386 1.47057 1.35159 1.04177 1.21233 0.96328 0.95588 0.85106 1.22703 0.99968 0.95189 1.03928 1.23200 1.02349 0.93235 1.01504 1.23021 1.04131 1.02510 0.89905 1.16087 0.79582 0.80043 0.84500 1.90886 1.62469 1.64293 1.31802 1.42569 1.45268 1.35301 1.08879 1.18145 0.92544 0.93465 0.86285 1.22187 1.03135 1.01171 0.96048 1.22780 0.93244 0.92440 0.95927 1.67749 1.18955 1.03462 1.33097 1.23202 0.92810 1.00644 0.87398 1.22183 1.05209 0.92727 1.01757 0.92375 0.95457 0.98308 0.89937 0.89111 0.90011 0.86832 0.88112 0.88131 0.87154 0.73906 0.86696 0.81326 0.78676 0.81018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 2 C 0.01 0.64 5.46 84.65 0.46 1.10 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.28 14.98 5.16 85.63 0.44 15.42 16 10 N -0.60 -25.43 2.46 -844.23 -2.07 -27.51 16 11 C 0.14 4.20 5.40 86.38 0.47 4.67 16 12 C -0.20 -4.96 6.01 -10.80 -0.06 -5.03 16 13 C -0.17 -2.74 9.82 30.60 0.30 -2.44 16 14 C -0.16 -2.80 10.25 30.60 0.31 -2.49 16 15 C 0.70 29.66 8.04 179.05 1.44 31.10 16 16 O -0.62 -32.49 13.63 -3.97 -0.05 -32.54 16 17 N -0.67 -20.60 5.18 -316.68 -1.64 -22.24 16 18 C 0.20 5.99 6.33 38.47 0.24 6.24 16 19 C -0.20 -6.90 8.73 22.48 0.20 -6.70 16 20 C 0.11 3.24 11.17 84.60 0.95 4.18 16 21 N -0.52 -13.90 10.36 -196.11 -2.03 -15.94 16 22 C 0.12 2.39 11.17 84.60 0.95 3.34 16 23 C -0.20 -4.11 10.06 22.48 0.23 -3.89 16 24 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 25 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 26 H 0.00 -0.08 7.42 -2.39 -0.02 -0.09 16 27 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 28 H 0.09 2.11 6.19 -2.38 -0.01 2.09 16 29 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.11 1.35 7.66 -2.39 -0.02 1.33 16 31 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.42 9.56 5.89 -92.70 -0.55 9.02 16 35 H 0.11 4.73 6.48 -2.91 -0.02 4.71 16 36 H 0.17 4.15 8.06 -2.90 -0.02 4.13 16 37 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -75.68 325.41 3.19 -72.48 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.53 Total: 19.79 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.16 Total: 14.68 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.46 Total: -121.14 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.05 Total: -32.54 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.68 3.19 -72.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176332644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.498 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds