Wall clock time and date at job start Mon Mar 30 2020 01:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00224 * 2 1 4 4 H 1.48503 * 109.47088 * 239.99831 * 3 2 1 5 5 H 1.48502 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46946 * 119.99980 * 3 2 1 7 7 C 1.37880 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46979 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99945 * 270.00135 * 10 9 7 12 12 C 1.53005 * 109.47304 * 269.99844 * 11 10 9 13 13 C 1.52992 * 117.49905 * 243.62364 * 12 11 10 14 14 C 1.52993 * 60.00138 * 252.51040 * 13 12 11 15 15 C 1.34780 * 120.00058 * 89.99504 * 10 9 7 16 16 O 1.21585 * 119.99931 * 0.02562 * 15 10 9 17 17 N 1.34772 * 119.99977 * 180.02562 * 15 10 9 18 18 C 1.39972 * 120.00010 * 185.29615 * 17 15 10 19 19 C 1.39275 * 120.48520 * 32.79104 * 18 17 15 20 20 C 1.38505 * 118.35779 * 180.22068 * 19 18 17 21 21 C 1.38268 * 119.23795 * 359.52854 * 20 19 18 22 22 N 1.31853 * 120.91956 * 0.25381 * 21 20 19 23 23 C 1.31828 * 121.79078 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99461 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47117 * 60.00065 * 9 7 2 26 26 H 1.08998 * 109.47322 * 299.99538 * 9 7 2 27 27 H 1.09005 * 109.47575 * 30.00115 * 11 10 9 28 28 H 1.09003 * 109.47258 * 149.99995 * 11 10 9 29 29 H 1.08997 * 115.54271 * 29.32659 * 12 11 10 30 30 H 1.08996 * 117.50180 * 359.97438 * 13 12 11 31 31 H 1.09006 * 117.50131 * 145.01591 * 13 12 11 32 32 H 1.09004 * 117.49693 * 252.51343 * 14 13 12 33 33 H 1.08993 * 117.50058 * 107.49322 * 14 13 12 34 34 H 0.97001 * 119.99949 * 5.29470 * 17 15 10 35 35 H 1.07994 * 120.82064 * 0.02562 * 19 18 17 36 36 H 1.08007 * 120.38273 * 179.80439 * 20 19 18 37 37 H 1.08002 * 119.54263 * 180.23380 * 21 20 19 38 38 H 1.07998 * 119.66353 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6788 -4.1695 -1.2682 12 6 1.7481 -5.3007 -1.7099 13 6 2.3400 -6.7087 -1.7982 14 6 2.0086 -5.9367 -3.0768 15 6 2.6409 -4.1249 1.1678 16 8 2.2455 -3.6631 2.2207 17 7 3.5170 -5.1490 1.1677 18 6 3.8868 -5.7537 2.3747 19 6 2.9783 -5.8460 3.4263 20 6 3.3923 -6.4489 4.6024 21 6 4.6803 -6.9442 4.6904 22 7 5.5151 -6.8450 3.6747 23 6 5.1631 -6.2749 2.5394 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.6867 -3.3879 -2.0279 28 1 3.6883 -4.5596 -1.1378 29 1 0.7113 -5.2096 -1.3864 30 1 3.3926 -6.8292 -1.5421 31 1 1.6926 -7.5445 -1.5327 32 1 1.1429 -6.2645 -3.6525 33 1 2.8429 -5.5493 -3.6614 34 1 3.8913 -5.4671 0.3313 35 1 1.9766 -5.4544 3.3280 36 1 2.7156 -6.5352 5.4398 37 1 5.0071 -7.4186 5.6040 38 1 5.8746 -6.2126 1.7294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176333192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:41 Heat of formation + Delta-G solvation = 42.307559 kcal Electronic energy + Delta-G solvation = -21069.694054 eV Core-core repulsion = 17913.514536 eV Total energy + Delta-G solvation = -3156.179519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60751 -39.20821 -37.37601 -35.04557 -34.35258 -32.58977 -31.91912 -29.77565 -27.80820 -26.16958 -23.82410 -23.43927 -22.38637 -22.19912 -20.87483 -19.36751 -18.20212 -17.11937 -16.69778 -16.50999 -15.90606 -15.13165 -14.99305 -14.81881 -14.22352 -14.03333 -13.82632 -13.53039 -13.29349 -12.85964 -12.44320 -12.26478 -12.00001 -11.60576 -11.52527 -11.25529 -10.98497 -10.67537 -10.61716 -10.41852 -10.14376 -9.99358 -9.72776 -9.62961 -9.54515 -9.12516 -8.46247 -8.15563 -7.71708 -6.07736 -4.12517 1.21306 1.45846 3.04535 3.30202 3.34859 3.38533 3.64053 3.77988 4.04659 4.27046 4.44208 4.60245 4.81919 4.92206 4.96501 5.05578 5.10427 5.24991 5.26700 5.30613 5.47851 5.59707 5.68728 5.72520 5.89030 5.94257 6.08674 6.19611 6.33124 6.34798 6.47109 6.70776 7.02037 7.27504 7.41670 7.57613 7.89320 8.04684 8.18217 8.46261 8.87188 9.12713 9.52872 11.00168 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.005743 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.028865 B = 4874.738220 C = 6249.704345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.261 3.739 10 N -0.601 5.601 11 C 0.142 3.858 12 C -0.167 4.167 13 C -0.185 4.185 14 C -0.174 4.174 15 C 0.700 3.300 16 O -0.567 6.567 17 N -0.689 5.689 18 C 0.138 3.862 19 C -0.083 4.083 20 C -0.149 4.149 21 C 0.062 3.938 22 N -0.467 5.467 23 C 0.059 3.941 24 H 0.264 0.736 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.403 0.597 35 H 0.148 0.852 36 H 0.134 0.866 37 H 0.152 0.848 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 -14.968 -1.064 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.142 3.858 10 N -0.335 5.335 11 C 0.017 3.983 12 C -0.186 4.186 13 C -0.222 4.222 14 C -0.212 4.212 15 C 0.402 3.598 16 O -0.443 6.443 17 N -0.339 5.339 18 C 0.039 3.961 19 C -0.111 4.111 20 C -0.170 4.170 21 C -0.096 4.096 22 N -0.175 5.175 23 C -0.101 4.101 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.240 0.760 35 H 0.166 0.834 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.333 -14.727 -0.300 16.034 hybrid contribution -0.257 1.199 -0.611 1.370 sum 6.077 -13.528 -0.910 14.858 Atomic orbital electron populations 1.69918 1.05967 1.27182 1.50236 1.24909 0.94869 0.99165 0.94986 0.86563 0.79534 0.82718 0.78631 1.20251 1.21141 1.20208 1.21401 0.93334 0.90696 1.51368 0.92543 1.19265 0.86740 0.81214 0.98600 1.47570 1.47487 1.36269 1.02152 1.20994 0.94343 0.95055 0.87862 1.22971 1.01627 0.93690 1.00349 1.23021 1.01228 0.95351 1.02579 1.22904 1.03450 1.04160 0.90678 1.15927 0.79448 0.79161 0.85306 1.90910 1.60875 1.62557 1.29956 1.42952 1.47817 1.35658 1.07487 1.18639 0.93837 0.95771 0.87884 1.21743 1.00688 0.96182 0.92505 1.22054 0.97764 0.98842 0.98302 1.22572 0.90621 0.99191 0.97229 1.67569 1.35877 1.14273 0.99830 1.22457 0.92353 0.99123 0.96194 0.92621 0.94600 0.93698 0.88866 0.92238 0.87187 0.89193 0.89078 0.88874 0.88662 0.76001 0.83390 0.84776 0.83042 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.26 6.57 5.16 -5.19 -0.03 6.55 16 10 N -0.60 -12.14 2.46 -180.80 -0.44 -12.59 16 11 C 0.14 2.16 5.50 -4.04 -0.02 2.13 16 12 C -0.17 -2.18 6.01 -90.62 -0.54 -2.72 16 13 C -0.18 -1.91 10.18 -26.74 -0.27 -2.19 16 14 C -0.17 -1.81 10.25 -26.74 -0.27 -2.09 16 15 C 0.70 14.33 8.04 -86.92 -0.70 13.64 16 16 O -0.57 -14.01 13.62 5.29 0.07 -13.93 16 17 N -0.69 -10.80 5.23 -14.13 -0.07 -10.88 16 18 C 0.14 2.12 6.31 -83.53 -0.53 1.60 16 19 C -0.08 -1.30 8.77 -39.10 -0.34 -1.64 16 20 C -0.15 -1.92 10.10 -39.47 -0.40 -2.32 16 21 C 0.06 0.77 11.18 -17.53 -0.20 0.58 16 22 N -0.47 -6.58 10.35 -13.09 -0.14 -6.71 16 23 C 0.06 0.81 11.12 -17.33 -0.19 0.62 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 27 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 28 H 0.06 0.74 6.02 -51.93 -0.31 0.43 16 29 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 30 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.40 5.05 6.40 -40.82 -0.26 4.79 16 35 H 0.15 2.61 6.48 -52.49 -0.34 2.27 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -32.67 326.52 -8.92 -41.58 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.05 Total: 5.48 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -3.92 Total: 0.82 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.08 Total: -55.54 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.67 -8.92 -41.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176333192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.891 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds