Wall clock time and date at job start Mon Mar 30 2020 01:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00224 * 2 1 4 4 H 1.48503 * 109.47088 * 239.99831 * 3 2 1 5 5 H 1.48502 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46946 * 119.99980 * 3 2 1 7 7 C 1.37880 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46979 * 179.97438 * 9 7 2 11 11 C 1.46495 * 119.99945 * 270.00135 * 10 9 7 12 12 C 1.53005 * 109.47304 * 269.99844 * 11 10 9 13 13 C 1.52992 * 117.49905 * 243.62364 * 12 11 10 14 14 C 1.52993 * 60.00138 * 252.51040 * 13 12 11 15 15 C 1.34780 * 120.00058 * 89.99504 * 10 9 7 16 16 O 1.21585 * 119.99931 * 0.02562 * 15 10 9 17 17 N 1.34772 * 119.99977 * 180.02562 * 15 10 9 18 18 C 1.39972 * 120.00010 * 185.29615 * 17 15 10 19 19 C 1.39275 * 120.48520 * 32.79104 * 18 17 15 20 20 C 1.38505 * 118.35779 * 180.22068 * 19 18 17 21 21 C 1.38268 * 119.23795 * 359.52854 * 20 19 18 22 22 N 1.31853 * 120.91956 * 0.25381 * 21 20 19 23 23 C 1.31828 * 121.79078 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99461 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47117 * 60.00065 * 9 7 2 26 26 H 1.08998 * 109.47322 * 299.99538 * 9 7 2 27 27 H 1.09005 * 109.47575 * 30.00115 * 11 10 9 28 28 H 1.09003 * 109.47258 * 149.99995 * 11 10 9 29 29 H 1.08997 * 115.54271 * 29.32659 * 12 11 10 30 30 H 1.08996 * 117.50180 * 359.97438 * 13 12 11 31 31 H 1.09006 * 117.50131 * 145.01591 * 13 12 11 32 32 H 1.09004 * 117.49693 * 252.51343 * 14 13 12 33 33 H 1.08993 * 117.50058 * 107.49322 * 14 13 12 34 34 H 0.97001 * 119.99949 * 5.29470 * 17 15 10 35 35 H 1.07994 * 120.82064 * 0.02562 * 19 18 17 36 36 H 1.08007 * 120.38273 * 179.80439 * 20 19 18 37 37 H 1.08002 * 119.54263 * 180.23380 * 21 20 19 38 38 H 1.07998 * 119.66353 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6788 -4.1695 -1.2682 12 6 1.7481 -5.3007 -1.7099 13 6 2.3400 -6.7087 -1.7982 14 6 2.0086 -5.9367 -3.0768 15 6 2.6409 -4.1249 1.1678 16 8 2.2455 -3.6631 2.2207 17 7 3.5170 -5.1490 1.1677 18 6 3.8868 -5.7537 2.3747 19 6 2.9783 -5.8460 3.4263 20 6 3.3923 -6.4489 4.6024 21 6 4.6803 -6.9442 4.6904 22 7 5.5151 -6.8450 3.6747 23 6 5.1631 -6.2749 2.5394 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.6867 -3.3879 -2.0279 28 1 3.6883 -4.5596 -1.1378 29 1 0.7113 -5.2096 -1.3864 30 1 3.3926 -6.8292 -1.5421 31 1 1.6926 -7.5445 -1.5327 32 1 1.1429 -6.2645 -3.6525 33 1 2.8429 -5.5493 -3.6614 34 1 3.8913 -5.4671 0.3313 35 1 1.9766 -5.4544 3.3280 36 1 2.7156 -6.5352 5.4398 37 1 5.0071 -7.4186 5.6040 38 1 5.8746 -6.2126 1.7294 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176333192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:41 Heat of formation + Delta-G solvation = 21.896566 kcal Electronic energy + Delta-G solvation = -21070.579141 eV Core-core repulsion = 17913.514536 eV Total energy + Delta-G solvation = -3157.064606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93637 -40.49058 -38.49323 -36.52811 -35.89287 -34.59730 -33.02998 -31.08638 -29.51519 -27.66708 -25.43636 -24.65726 -23.66176 -23.21173 -22.02838 -20.78917 -19.59575 -18.60318 -18.40853 -17.83230 -17.12364 -16.80725 -16.28504 -16.15205 -15.86567 -15.09965 -14.91409 -14.85115 -14.70731 -14.35506 -14.02428 -13.75271 -13.34149 -13.01905 -12.95812 -12.61797 -12.56150 -12.31555 -12.21400 -11.98984 -11.74294 -11.41210 -11.25679 -10.82098 -10.65357 -10.63699 -10.36240 -9.65649 -9.14354 -8.22192 -6.36765 0.13807 0.31913 1.36562 1.40537 1.47319 1.62432 2.12115 2.38399 2.75992 2.92277 3.05659 3.09295 3.64149 3.81187 3.92135 3.96795 3.99700 4.09270 4.16006 4.24123 4.38437 4.64711 4.70674 4.75718 4.81219 4.91816 5.04796 5.12147 5.17998 5.23666 5.26982 5.30790 5.34470 5.52891 5.74647 5.85622 6.00641 6.05159 6.71371 6.97174 6.99175 7.29868 7.56368 8.84325 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.005743 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.028865 B = 4874.738220 C = 6249.704345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.280 3.720 10 N -0.606 5.606 11 C 0.142 3.858 12 C -0.194 4.194 13 C -0.167 4.167 14 C -0.157 4.157 15 C 0.697 3.303 16 O -0.619 6.619 17 N -0.668 5.668 18 C 0.113 3.887 19 C -0.106 4.106 20 C -0.146 4.146 21 C 0.070 3.930 22 N -0.480 5.480 23 C 0.069 3.931 24 H 0.267 0.733 25 H 0.027 0.973 26 H -0.001 1.001 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.419 0.581 35 H 0.118 0.882 36 H 0.160 0.840 37 H 0.189 0.811 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 -16.301 -1.545 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.070 0.930 9 C 0.159 3.841 10 N -0.339 5.339 11 C 0.019 3.981 12 C -0.214 4.214 13 C -0.204 4.204 14 C -0.195 4.195 15 C 0.399 3.601 16 O -0.499 6.499 17 N -0.319 5.319 18 C 0.014 3.986 19 C -0.134 4.134 20 C -0.166 4.166 21 C -0.087 4.087 22 N -0.188 5.188 23 C -0.091 4.091 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.259 0.741 35 H 0.136 0.864 36 H 0.178 0.822 37 H 0.206 0.794 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.956 -16.127 -0.824 18.465 hybrid contribution -1.070 1.505 -0.387 1.887 sum 7.886 -14.621 -1.211 16.656 Atomic orbital electron populations 1.70039 1.07478 1.28207 1.50902 1.25798 0.95751 1.02842 0.94434 0.85511 0.78344 0.78317 0.78888 1.18412 1.20310 1.20635 1.21679 0.93238 0.91969 1.51360 0.92955 1.18658 0.87066 0.82525 0.95868 1.47373 1.46848 1.35439 1.04195 1.21220 0.96326 0.95411 0.85163 1.22686 0.99939 0.95057 1.03725 1.23144 1.02259 0.93311 1.01716 1.23024 1.04144 1.02432 0.89880 1.16067 0.79793 0.79815 0.84434 1.90868 1.62804 1.64426 1.31787 1.42514 1.46488 1.34206 1.08680 1.18837 0.94851 0.97197 0.87668 1.21733 0.99904 0.97476 0.94334 1.22330 0.98652 0.97795 0.97872 1.23186 0.89884 0.97692 0.97956 1.67692 1.36251 1.14655 1.00245 1.22819 0.91721 0.97680 0.96901 0.92390 0.95470 0.98252 0.89895 0.88969 0.90079 0.87047 0.88656 0.88185 0.87002 0.74099 0.86361 0.82246 0.79387 0.80268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 2 C 0.01 0.63 5.46 84.66 0.46 1.09 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.54 -31.16 9.39 25.60 0.24 -30.92 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.28 14.99 5.16 85.63 0.44 15.44 16 10 N -0.61 -25.47 2.46 -844.18 -2.07 -27.54 16 11 C 0.14 4.26 5.50 86.38 0.48 4.74 16 12 C -0.19 -5.02 6.01 -10.80 -0.06 -5.09 16 13 C -0.17 -3.06 10.18 30.59 0.31 -2.75 16 14 C -0.16 -2.92 10.25 30.59 0.31 -2.61 16 15 C 0.70 29.62 8.04 179.05 1.44 31.06 16 16 O -0.62 -32.44 13.62 -3.98 -0.05 -32.49 16 17 N -0.67 -20.69 5.23 -316.87 -1.66 -22.35 16 18 C 0.11 3.40 6.31 38.23 0.24 3.64 16 19 C -0.11 -3.38 8.77 22.58 0.20 -3.18 16 20 C -0.15 -3.56 10.10 22.34 0.23 -3.33 16 21 C 0.07 1.55 11.18 84.70 0.95 2.49 16 22 N -0.48 -12.14 10.35 -195.33 -2.02 -14.16 16 23 C 0.07 1.72 11.12 84.84 0.94 2.67 16 24 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 25 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 26 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 27 H 0.08 2.65 8.07 -2.38 -0.02 2.63 16 28 H 0.09 2.12 6.02 -2.39 -0.01 2.10 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.11 1.57 7.92 -2.39 -0.02 1.55 16 31 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.42 9.73 6.40 -92.71 -0.59 9.14 16 35 H 0.12 4.49 6.48 -2.91 -0.02 4.47 16 36 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 37 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -74.70 326.52 3.15 -71.55 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.48 Total: 20.33 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.17 Total: 13.24 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.47 Total: -119.52 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.70 3.15 -71.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176333192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.445 kcal (2) G-P(sol) polarization free energy of solvation -74.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds