Wall clock time and date at job start Mon Mar 30 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48506 * 109.46826 * 239.99650 * 3 2 1 5 5 H 1.48498 * 109.47437 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47072 * 120.00171 * 3 2 1 7 7 C 1.37880 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00056 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47192 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99779 * 270.00246 * 10 9 7 12 12 C 1.53005 * 109.46714 * 269.99961 * 11 10 9 13 13 C 1.53002 * 117.49548 * 243.61855 * 12 11 10 14 14 C 1.52996 * 59.99989 * 252.51107 * 13 12 11 15 15 C 1.34776 * 120.00142 * 89.99428 * 10 9 7 16 16 O 1.21573 * 119.99945 * 0.02562 * 15 10 9 17 17 N 1.34779 * 119.99858 * 179.97438 * 15 10 9 18 18 C 1.39391 * 120.00132 * 185.09673 * 17 15 10 19 19 C 1.39040 * 119.69874 * 174.87299 * 18 17 15 20 20 C 1.38348 * 119.10164 * 179.97438 * 19 18 17 21 21 C 1.38850 * 118.49815 * 0.02562 * 20 19 18 22 22 C 1.38064 * 119.30720 * 0.27465 * 21 20 19 23 23 N 1.31943 * 120.85119 * 359.42488 * 22 21 20 24 24 H 0.96999 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46800 * 59.99704 * 9 7 2 26 26 H 1.09003 * 109.46782 * 300.00357 * 9 7 2 27 27 H 1.09005 * 109.47139 * 29.99209 * 11 10 9 28 28 H 1.08993 * 109.47179 * 149.99564 * 11 10 9 29 29 H 1.08998 * 115.54806 * 29.33174 * 12 11 10 30 30 H 1.09003 * 117.49824 * 0.02562 * 13 12 11 31 31 H 1.08997 * 117.49521 * 145.01747 * 13 12 11 32 32 H 1.09002 * 117.50231 * 252.51112 * 14 13 12 33 33 H 1.09004 * 117.49977 * 107.49262 * 14 13 12 34 34 H 0.96998 * 120.00036 * 5.09482 * 17 15 10 35 35 H 1.08001 * 120.44957 * 359.94718 * 19 18 17 36 36 H 1.08004 * 120.75048 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.34352 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.56898 * 179.70648 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 2.6800 -4.1689 -1.2701 12 6 1.7495 -5.2999 -1.7130 13 6 2.3416 -6.7079 -1.8016 14 6 2.0109 -5.9352 -3.0801 15 6 2.6401 -4.1254 1.1658 16 8 2.2440 -3.6641 2.2186 17 7 3.5155 -5.1502 1.1660 18 6 3.8861 -5.7501 2.3684 19 6 4.7050 -6.8737 2.3540 20 6 5.0657 -7.4589 3.5546 21 6 4.5924 -6.8983 4.7334 22 6 3.7775 -5.7854 4.6730 23 7 3.4547 -5.2453 3.5133 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.6882 -3.3868 -2.0294 28 1 3.6893 -4.5589 -1.1392 29 1 0.7124 -5.2089 -1.3903 30 1 3.3938 -6.8285 -1.5440 31 1 1.6940 -7.5437 -1.5369 32 1 1.1457 -6.2627 -3.6566 33 1 2.8457 -5.5475 -3.6640 34 1 3.8877 -5.4703 0.3294 35 1 5.0546 -7.2842 1.4182 36 1 5.7010 -8.3321 3.5745 37 1 4.8557 -7.3306 5.6874 38 1 3.4031 -5.3487 5.5871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176334739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:00 Heat of formation + Delta-G solvation = 56.938583 kcal Electronic energy + Delta-G solvation = -21093.197043 eV Core-core repulsion = 17937.651974 eV Total energy + Delta-G solvation = -3155.545070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50535 -39.03284 -37.23690 -34.78693 -34.13523 -32.47707 -32.18390 -29.79999 -27.73614 -26.09516 -23.83849 -23.36895 -22.34471 -22.09998 -20.78468 -19.26889 -18.21342 -17.17134 -16.42644 -16.06156 -15.55725 -15.12078 -15.07264 -14.72519 -14.26123 -14.21050 -13.79001 -13.28132 -13.13659 -12.93769 -12.32658 -12.11690 -11.90452 -11.57359 -11.48695 -11.17258 -10.89080 -10.59263 -10.44983 -10.35092 -10.06636 -9.93381 -9.70723 -9.60883 -9.52794 -8.60533 -8.38386 -8.06464 -7.59145 -5.99516 -4.03845 1.29963 1.49483 3.03533 3.35221 3.39696 3.43707 3.79793 3.82514 4.26703 4.30757 4.51118 4.69378 4.88228 4.90806 4.96795 5.11733 5.16881 5.21667 5.30820 5.35138 5.41049 5.62391 5.77728 5.79043 5.93687 5.96763 6.04019 6.12593 6.26173 6.40760 6.51499 6.72408 7.08198 7.34420 7.55696 7.63647 7.97815 8.27545 8.28777 8.69212 8.97133 9.37190 9.61730 11.08358 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.005851 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.135022 B = 4784.161069 C = 6294.346569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.262 3.738 10 N -0.607 5.607 11 C 0.143 3.857 12 C -0.166 4.166 13 C -0.186 4.186 14 C -0.175 4.175 15 C 0.689 3.311 16 O -0.520 6.520 17 N -0.674 5.674 18 C 0.392 3.608 19 C -0.223 4.223 20 C -0.048 4.048 21 C -0.224 4.224 22 C 0.136 3.864 23 N -0.471 5.471 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.406 0.594 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 -16.901 -0.584 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.143 3.857 10 N -0.342 5.342 11 C 0.018 3.982 12 C -0.186 4.186 13 C -0.223 4.223 14 C -0.212 4.212 15 C 0.389 3.611 16 O -0.390 6.390 17 N -0.324 5.324 18 C 0.159 3.841 19 C -0.248 4.248 20 C -0.074 4.074 21 C -0.246 4.246 22 C -0.023 4.023 23 N -0.185 5.185 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.128 0.872 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.243 0.757 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.956 -15.543 0.070 17.461 hybrid contribution 1.220 -0.039 -0.546 1.338 sum 9.177 -15.583 -0.476 18.090 Atomic orbital electron populations 1.69921 1.05949 1.27060 1.50474 1.24908 0.94853 0.99100 0.95113 0.86573 0.79523 0.82821 0.78565 1.20335 1.21200 1.20222 1.21419 0.93314 0.90750 1.51017 0.92600 1.19220 0.86776 0.81198 0.98503 1.47601 1.48118 1.36484 1.02044 1.20960 0.94106 0.94958 0.88146 1.23010 1.01734 0.93689 1.00147 1.23014 1.01137 0.95475 1.02662 1.22902 1.03415 1.04224 0.90697 1.16031 0.79937 0.79685 0.85408 1.91017 1.58533 1.60120 1.29316 1.43210 1.46499 1.35809 1.06889 1.18334 0.90650 0.88798 0.86346 1.21366 1.04949 0.98679 0.99773 1.21235 0.96450 0.98052 0.91689 1.21962 1.03442 1.00182 0.99023 1.22733 0.92482 0.91652 0.95438 1.67835 1.23316 1.30487 0.96896 0.92704 0.94752 0.93720 0.88978 0.92518 0.87181 0.89287 0.89102 0.88909 0.88699 0.75689 0.85204 0.85041 0.85257 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.26 6.91 5.16 -5.19 -0.03 6.88 16 10 N -0.61 -13.03 2.46 -180.80 -0.44 -13.48 16 11 C 0.14 2.30 5.50 -4.04 -0.02 2.27 16 12 C -0.17 -2.29 6.01 -90.62 -0.54 -2.84 16 13 C -0.19 -2.00 10.18 -26.73 -0.27 -2.27 16 14 C -0.17 -1.89 10.25 -26.73 -0.27 -2.17 16 15 C 0.69 15.37 8.24 -86.92 -0.72 14.65 16 16 O -0.52 -14.12 14.18 5.30 0.08 -14.05 16 17 N -0.67 -11.60 5.27 -15.81 -0.08 -11.68 16 18 C 0.39 6.59 7.42 -154.71 -1.15 5.44 16 19 C -0.22 -2.74 9.94 -39.24 -0.39 -3.13 16 20 C -0.05 -0.51 10.17 -39.31 -0.40 -0.91 16 21 C -0.22 -2.52 10.11 -39.42 -0.40 -2.92 16 22 C 0.14 1.98 11.17 -17.57 -0.20 1.79 16 23 N -0.47 -9.00 7.89 -12.37 -0.10 -9.10 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 27 H 0.09 1.53 8.07 -51.93 -0.42 1.12 16 28 H 0.06 0.75 6.03 -51.93 -0.31 0.44 16 29 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 30 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.41 5.46 6.27 -40.82 -0.26 5.21 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -35.44 327.61 -9.84 -45.28 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.13 Total: 3.88 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -4.81 Total: 3.11 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.11 Total: -60.33 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.44 -9.84 -45.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176334739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.218 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds