Wall clock time and date at job start Mon Mar 30 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48506 * 109.46826 * 239.99650 * 3 2 1 5 5 H 1.48498 * 109.47437 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47072 * 120.00171 * 3 2 1 7 7 C 1.37880 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99786 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00056 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47192 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99779 * 270.00246 * 10 9 7 12 12 C 1.53005 * 109.46714 * 269.99961 * 11 10 9 13 13 C 1.53002 * 117.49548 * 243.61855 * 12 11 10 14 14 C 1.52996 * 59.99989 * 252.51107 * 13 12 11 15 15 C 1.34776 * 120.00142 * 89.99428 * 10 9 7 16 16 O 1.21573 * 119.99945 * 0.02562 * 15 10 9 17 17 N 1.34779 * 119.99858 * 179.97438 * 15 10 9 18 18 C 1.39391 * 120.00132 * 185.09673 * 17 15 10 19 19 C 1.39040 * 119.69874 * 174.87299 * 18 17 15 20 20 C 1.38348 * 119.10164 * 179.97438 * 19 18 17 21 21 C 1.38850 * 118.49815 * 0.02562 * 20 19 18 22 22 C 1.38064 * 119.30720 * 0.27465 * 21 20 19 23 23 N 1.31943 * 120.85119 * 359.42488 * 22 21 20 24 24 H 0.96999 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46800 * 59.99704 * 9 7 2 26 26 H 1.09003 * 109.46782 * 300.00357 * 9 7 2 27 27 H 1.09005 * 109.47139 * 29.99209 * 11 10 9 28 28 H 1.08993 * 109.47179 * 149.99564 * 11 10 9 29 29 H 1.08998 * 115.54806 * 29.33174 * 12 11 10 30 30 H 1.09003 * 117.49824 * 0.02562 * 13 12 11 31 31 H 1.08997 * 117.49521 * 145.01747 * 13 12 11 32 32 H 1.09002 * 117.50231 * 252.51112 * 14 13 12 33 33 H 1.09004 * 117.49977 * 107.49262 * 14 13 12 34 34 H 0.96998 * 120.00036 * 5.09482 * 17 15 10 35 35 H 1.08001 * 120.44957 * 359.94718 * 19 18 17 36 36 H 1.08004 * 120.75048 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.34352 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.56898 * 179.70648 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 2.6800 -4.1689 -1.2701 12 6 1.7495 -5.2999 -1.7130 13 6 2.3416 -6.7079 -1.8016 14 6 2.0109 -5.9352 -3.0801 15 6 2.6401 -4.1254 1.1658 16 8 2.2440 -3.6641 2.2186 17 7 3.5155 -5.1502 1.1660 18 6 3.8861 -5.7501 2.3684 19 6 4.7050 -6.8737 2.3540 20 6 5.0657 -7.4589 3.5546 21 6 4.5924 -6.8983 4.7334 22 6 3.7775 -5.7854 4.6730 23 7 3.4547 -5.2453 3.5133 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.6882 -3.3868 -2.0294 28 1 3.6893 -4.5589 -1.1392 29 1 0.7124 -5.2089 -1.3903 30 1 3.3938 -6.8285 -1.5440 31 1 1.6940 -7.5437 -1.5369 32 1 1.1457 -6.2627 -3.6566 33 1 2.8457 -5.5475 -3.6640 34 1 3.8877 -5.4703 0.3294 35 1 5.0546 -7.2842 1.4182 36 1 5.7010 -8.3321 3.5745 37 1 4.8557 -7.3306 5.6874 38 1 3.4031 -5.3487 5.5871 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176334739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:00 Heat of formation + Delta-G solvation = 34.309071 kcal Electronic energy + Delta-G solvation = -21094.178333 eV Core-core repulsion = 17937.651974 eV Total energy + Delta-G solvation = -3156.526359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82683 -40.36899 -38.39827 -36.35104 -35.73752 -34.53409 -33.23097 -31.05951 -29.53065 -27.64198 -25.46841 -24.55617 -23.56892 -23.19302 -21.97334 -20.72439 -19.59322 -18.60983 -18.50664 -17.13405 -16.81164 -16.61084 -16.58856 -15.98782 -15.83930 -15.32855 -15.06228 -14.74159 -14.62876 -14.23782 -13.87155 -13.68552 -13.27588 -12.92393 -12.79889 -12.61529 -12.55364 -12.29984 -12.19678 -11.85852 -11.66816 -11.36052 -11.23072 -10.79247 -10.72952 -10.63243 -9.91717 -9.55527 -9.07836 -8.20731 -6.35785 0.26337 0.53733 1.35527 1.40680 1.47423 1.62517 2.26100 2.40091 2.76578 3.05852 3.08735 3.09895 3.66667 3.84290 3.97813 4.02906 4.10114 4.23311 4.25110 4.30649 4.45664 4.66166 4.77222 4.81674 4.87721 4.93223 5.05653 5.11192 5.21702 5.28060 5.31960 5.34580 5.44383 5.55989 5.76362 5.95817 6.00346 6.07394 6.72304 6.90232 7.30184 7.38683 7.76514 8.85772 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.005851 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.135022 B = 4784.161069 C = 6294.346569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.282 3.718 10 N -0.612 5.612 11 C 0.143 3.857 12 C -0.198 4.198 13 C -0.165 4.165 14 C -0.156 4.156 15 C 0.686 3.314 16 O -0.584 6.584 17 N -0.659 5.659 18 C 0.348 3.652 19 C -0.204 4.204 20 C -0.042 4.042 21 C -0.202 4.202 22 C 0.103 3.897 23 N -0.536 5.536 24 H 0.267 0.733 25 H 0.026 0.974 26 H -0.006 1.006 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.423 0.577 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.167 0.833 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -19.440 -1.494 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.069 0.931 9 C 0.161 3.839 10 N -0.347 5.347 11 C 0.020 3.980 12 C -0.218 4.218 13 C -0.202 4.202 14 C -0.194 4.194 15 C 0.387 3.613 16 O -0.458 6.458 17 N -0.311 5.311 18 C 0.116 3.884 19 C -0.227 4.227 20 C -0.068 4.068 21 C -0.223 4.223 22 C -0.055 4.055 23 N -0.251 5.251 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.012 0.988 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.263 0.737 35 H 0.186 0.814 36 H 0.199 0.801 37 H 0.185 0.815 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.236 -18.160 -0.870 21.373 hybrid contribution 0.241 0.603 -0.173 0.672 sum 11.477 -17.558 -1.043 21.002 Atomic orbital electron populations 1.70048 1.07534 1.28196 1.50979 1.25838 0.95792 1.02948 0.94412 0.85476 0.78322 0.78153 0.78872 1.18258 1.20139 1.20745 1.21675 0.93155 0.92019 1.51281 0.93107 1.18596 0.87123 0.82696 0.95516 1.47422 1.47393 1.35640 1.04197 1.21188 0.96176 0.95381 0.85222 1.22698 0.99854 0.95332 1.03906 1.23162 1.02382 0.93135 1.01532 1.23023 1.04135 1.02386 0.89820 1.16241 0.80240 0.80356 0.84473 1.90959 1.60953 1.62437 1.31489 1.42758 1.45475 1.34478 1.08353 1.18743 0.93251 0.90965 0.85426 1.21766 1.02387 0.96235 1.02352 1.21855 0.95827 0.98767 0.90356 1.22377 1.00607 0.97947 1.01348 1.22993 0.94398 0.93597 0.94480 1.67584 1.25502 1.33168 0.98894 0.92396 0.95582 0.98806 0.90056 0.89161 0.90438 0.86725 0.88575 0.88209 0.86936 0.73654 0.81404 0.80146 0.81512 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.97 46.39 29.54 68.60 2.03 48.42 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.54 -32.55 9.39 25.60 0.24 -32.31 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.28 16.02 5.16 85.63 0.44 16.46 16 10 N -0.61 -27.78 2.46 -844.19 -2.07 -29.85 16 11 C 0.14 4.62 5.50 86.38 0.48 5.10 16 12 C -0.20 -5.44 6.01 -10.79 -0.06 -5.50 16 13 C -0.17 -3.09 10.18 30.59 0.31 -2.78 16 14 C -0.16 -3.01 10.25 30.59 0.31 -2.69 16 15 C 0.69 32.32 8.24 179.05 1.47 33.80 16 16 O -0.58 -34.26 14.18 -3.95 -0.06 -34.32 16 17 N -0.66 -22.71 5.27 -322.21 -1.70 -24.41 16 18 C 0.35 11.54 7.42 132.92 0.99 12.53 16 19 C -0.20 -4.26 9.94 22.49 0.22 -4.04 16 20 C -0.04 -0.69 10.17 22.44 0.23 -0.46 16 21 C -0.20 -3.89 10.11 22.38 0.23 -3.66 16 22 C 0.10 3.01 11.17 84.63 0.95 3.96 16 23 N -0.54 -21.30 7.89 -193.05 -1.52 -22.82 16 24 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 26 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 27 H 0.08 2.76 8.07 -2.38 -0.02 2.74 16 28 H 0.09 2.24 6.03 -2.39 -0.01 2.22 16 29 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.11 1.56 7.90 -2.39 -0.02 1.54 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.42 10.65 6.27 -92.71 -0.58 10.06 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -85.89 327.61 3.71 -82.17 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.49 Total: 16.88 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 6.26 Total: 21.40 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -5.01 Total: -134.55 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.06 Total: -34.32 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -85.89 3.71 -82.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176334739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.483 kcal (2) G-P(sol) polarization free energy of solvation -85.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds