Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00263 * 2 1 4 4 O 1.20829 * 119.99719 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00236 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47269 * 179.97438 * 5 3 2 7 7 C 1.36933 * 119.99974 * 270.00395 * 6 5 3 8 8 H 1.07999 * 120.00066 * 188.28379 * 7 6 5 9 9 C 1.38812 * 120.00423 * 8.27858 * 7 6 5 10 10 N 1.31621 * 119.99639 * 26.72060 * 9 7 6 11 11 Si 1.86795 * 120.00469 * 206.72462 * 9 7 6 12 12 H 1.48503 * 109.47342 * 89.99735 * 11 9 7 13 13 H 1.48497 * 109.47176 * 210.00042 * 11 9 7 14 14 H 1.48504 * 109.46755 * 329.99933 * 11 9 7 15 15 C 1.46504 * 120.00011 * 89.99541 * 6 5 3 16 16 C 1.50696 * 109.47472 * 265.50107 * 15 6 5 17 17 C 1.32566 * 120.00593 * 125.00123 * 16 15 6 18 18 C 1.47808 * 120.00072 * 179.97438 * 17 16 15 19 19 C 1.39534 * 120.13675 * 180.02562 * 18 17 16 20 20 C 1.37974 * 119.85631 * 179.97438 * 19 18 17 21 21 C 1.38353 * 120.13987 * 359.97438 * 20 19 18 22 22 C 1.38339 * 120.28595 * 359.97438 * 21 20 19 23 23 C 1.37980 * 120.14453 * 0.02562 * 22 21 20 24 24 H 1.08992 * 109.47088 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46709 * 300.00596 * 1 2 3 26 26 H 1.09002 * 109.46460 * 60.00119 * 1 2 3 27 27 H 1.08996 * 109.47065 * 60.00063 * 5 3 2 28 28 H 1.08997 * 109.47073 * 299.99521 * 5 3 2 29 29 H 0.97000 * 119.99817 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.46958 * 145.49064 * 15 6 5 31 31 H 1.09000 * 109.46687 * 25.49749 * 15 6 5 32 32 H 1.08005 * 119.99873 * 304.99678 * 16 15 6 33 33 H 1.08005 * 119.99534 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.07704 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.93577 * 179.72118 * 20 19 18 36 36 H 1.07999 * 119.85733 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.93483 * 179.97438 * 22 21 20 38 38 H 1.07990 * 120.07523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6797 -0.0002 7 6 4.1764 3.3355 -1.1864 8 1 4.6095 4.3248 -1.1917 9 6 3.8172 2.7287 -2.3821 10 7 2.8593 1.8262 -2.4002 11 14 4.6930 3.1930 -3.9653 12 1 5.8703 2.3085 -4.1575 13 1 3.7619 3.0338 -5.1111 14 1 5.1432 4.6060 -3.8858 15 6 4.1889 3.3830 1.2682 16 6 2.9291 4.1183 1.6465 17 6 2.3671 3.9062 2.8282 18 6 1.1317 4.6279 3.1993 19 6 0.5381 4.4072 4.4426 20 6 -0.6147 5.0844 4.7833 21 6 -1.1818 5.9811 3.8953 22 6 -0.5975 6.2052 2.6615 23 6 0.5554 5.5344 2.3087 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 3.9565 0.7805 -0.8891 28 1 3.9558 0.7810 0.8908 29 1 2.6080 1.4024 -3.2357 30 1 5.0068 4.0953 1.1594 31 1 4.4365 2.6619 2.0472 32 1 2.4841 4.8183 0.9548 33 1 2.8120 3.2059 3.5198 34 1 0.9800 3.7077 5.1369 35 1 -1.0778 4.9112 5.7434 36 1 -2.0844 6.5085 4.1665 37 1 -1.0452 6.9062 1.9726 38 1 1.0108 5.7105 1.3455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177622574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -14.253146 kcal Electronic energy + Delta-G solvation = -21275.203177 eV Core-core repulsion = 18084.278251 eV Total energy + Delta-G solvation = -3190.924926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.93664 -38.77179 -36.32731 -34.65962 -33.73369 -31.43496 -30.66339 -29.50830 -27.96593 -26.03257 -25.48674 -22.83061 -22.22656 -21.11712 -19.70953 -18.77772 -16.88302 -16.75100 -16.18349 -15.50713 -15.10325 -15.05230 -14.65289 -14.49739 -13.80464 -13.73501 -13.21830 -12.96694 -12.65963 -12.61283 -12.20407 -12.12226 -11.74983 -11.31271 -11.06815 -11.05663 -10.90120 -10.68383 -10.54001 -10.40515 -10.15929 -9.95030 -9.66013 -9.51878 -9.06876 -8.67006 -8.53716 -7.57319 -7.18478 -5.99578 -3.24281 1.37592 1.69566 3.07988 3.33655 3.41529 3.42790 3.93061 4.08863 4.28616 4.46128 5.08858 5.16606 5.20735 5.23318 5.36941 5.42116 5.71797 5.76497 5.81719 5.84030 5.90856 6.08527 6.12954 6.21922 6.29570 6.31086 6.40544 6.47384 6.69497 6.72611 6.81257 6.85848 7.01580 7.24315 7.34843 7.46661 7.65621 7.82360 8.09605 8.95322 9.42725 9.66223 10.05545 11.11446 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.005564 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.305501 B = 5031.431554 C = 5628.851889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.385 6.385 3 C 0.463 3.537 4 O -0.498 6.498 5 C 0.187 3.813 6 N -0.562 5.562 7 C -0.256 4.256 8 H 0.084 0.916 9 C 0.002 3.998 10 N -0.897 5.897 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.293 1.293 14 H -0.279 1.279 15 C 0.162 3.838 16 C -0.091 4.091 17 C -0.179 4.179 18 C -0.021 4.021 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.117 4.117 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.258 0.742 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 1.282 10.370 10.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.302 6.302 3 C 0.302 3.698 4 O -0.382 6.382 5 C 0.058 3.942 6 N -0.280 5.280 7 C -0.384 4.384 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.541 5.541 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.220 1.220 14 H -0.205 1.205 15 C 0.036 3.964 16 C -0.112 4.112 17 C -0.199 4.199 18 C -0.021 4.021 19 C -0.146 4.146 20 C -0.140 4.140 21 C -0.159 4.159 22 C -0.135 4.135 23 C -0.135 4.135 24 H 0.097 0.903 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.241 1.523 10.192 10.803 hybrid contribution -0.435 0.272 -1.098 1.212 sum -3.676 1.795 9.094 9.972 Atomic orbital electron populations 1.22816 0.79986 1.01110 1.01166 1.86536 1.20843 1.36961 1.85889 1.25458 0.93446 0.80300 0.70564 1.90473 1.66436 1.36257 1.45007 1.20519 0.85769 0.86453 1.01480 1.44438 1.75010 1.07061 1.01508 1.19332 1.34587 1.01823 0.82679 0.89824 1.24772 0.97190 0.99583 0.98056 1.69889 1.26393 1.31283 1.26583 0.86180 0.79281 0.78124 0.82611 1.21262 1.21996 1.20464 1.20227 0.93437 0.94510 0.88176 1.24481 0.97949 0.95114 0.93619 1.21360 0.96305 1.03586 0.98634 1.19179 0.94759 0.94937 0.93259 1.21193 0.96471 1.00496 0.96395 1.20975 0.96337 0.97374 0.99294 1.21043 1.00311 0.99878 0.94715 1.21043 0.96062 0.99856 0.96523 1.21395 0.96058 0.96485 0.99545 0.90315 0.93739 0.92977 0.86963 0.92927 0.93131 0.91676 0.92923 0.87303 0.87496 0.86461 0.86675 0.86801 0.86523 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.56 101.05 1.07 1.89 16 2 O -0.38 -8.53 10.57 -39.25 -0.41 -8.94 16 3 C 0.46 11.29 6.03 36.01 0.22 11.50 16 4 O -0.50 -13.44 14.57 -18.75 -0.27 -13.71 16 5 C 0.19 4.29 5.58 -5.19 -0.03 4.26 16 6 N -0.56 -13.16 2.06 -175.98 -0.36 -13.53 16 7 C -0.26 -6.59 9.68 -15.06 -0.15 -6.74 16 8 H 0.08 2.11 7.96 -52.49 -0.42 1.70 16 9 C 0.00 0.06 4.85 -17.43 -0.08 -0.02 16 10 N -0.90 -24.89 9.05 55.49 0.50 -24.39 16 11 Si 0.91 21.03 29.63 -169.99 -5.04 16.00 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.16 3.15 6.16 -5.19 -0.03 3.12 16 16 C -0.09 -1.78 7.93 -36.22 -0.29 -2.07 16 17 C -0.18 -3.20 9.52 -37.58 -0.36 -3.56 16 18 C -0.02 -0.37 5.87 -105.02 -0.62 -0.99 16 19 C -0.13 -1.92 9.79 -39.20 -0.38 -2.31 16 20 C -0.12 -1.65 10.03 -39.64 -0.40 -2.05 16 21 C -0.14 -1.92 10.04 -39.50 -0.40 -2.32 16 22 C -0.12 -1.76 10.03 -39.64 -0.40 -2.16 16 23 C -0.12 -2.04 9.40 -39.19 -0.37 -2.40 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.11 2.77 6.34 -51.93 -0.33 2.44 16 28 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.05 0.90 7.51 -51.93 -0.39 0.51 16 32 H 0.11 2.36 6.04 -52.48 -0.32 2.04 16 33 H 0.11 1.72 7.87 -52.48 -0.41 1.31 16 34 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.13 2.28 6.17 -52.49 -0.32 1.95 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -30.62 325.43 -8.00 -38.62 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.11 Total: 4.88 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.14 Total: -37.91 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.69 Total: -22.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.04 Total: 16.00 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.62 -8.00 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177622574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.372 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds