Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00263 * 2 1 4 4 O 1.20829 * 119.99719 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00236 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47269 * 179.97438 * 5 3 2 7 7 C 1.36933 * 119.99974 * 270.00395 * 6 5 3 8 8 H 1.07999 * 120.00066 * 188.28379 * 7 6 5 9 9 C 1.38812 * 120.00423 * 8.27858 * 7 6 5 10 10 N 1.31621 * 119.99639 * 26.72060 * 9 7 6 11 11 Si 1.86795 * 120.00469 * 206.72462 * 9 7 6 12 12 H 1.48503 * 109.47342 * 89.99735 * 11 9 7 13 13 H 1.48497 * 109.47176 * 210.00042 * 11 9 7 14 14 H 1.48504 * 109.46755 * 329.99933 * 11 9 7 15 15 C 1.46504 * 120.00011 * 89.99541 * 6 5 3 16 16 C 1.50696 * 109.47472 * 265.50107 * 15 6 5 17 17 C 1.32566 * 120.00593 * 125.00123 * 16 15 6 18 18 C 1.47808 * 120.00072 * 179.97438 * 17 16 15 19 19 C 1.39534 * 120.13675 * 180.02562 * 18 17 16 20 20 C 1.37974 * 119.85631 * 179.97438 * 19 18 17 21 21 C 1.38353 * 120.13987 * 359.97438 * 20 19 18 22 22 C 1.38339 * 120.28595 * 359.97438 * 21 20 19 23 23 C 1.37980 * 120.14453 * 0.02562 * 22 21 20 24 24 H 1.08992 * 109.47088 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46709 * 300.00596 * 1 2 3 26 26 H 1.09002 * 109.46460 * 60.00119 * 1 2 3 27 27 H 1.08996 * 109.47065 * 60.00063 * 5 3 2 28 28 H 1.08997 * 109.47073 * 299.99521 * 5 3 2 29 29 H 0.97000 * 119.99817 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.46958 * 145.49064 * 15 6 5 31 31 H 1.09000 * 109.46687 * 25.49749 * 15 6 5 32 32 H 1.08005 * 119.99873 * 304.99678 * 16 15 6 33 33 H 1.08005 * 119.99534 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.07704 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.93577 * 179.72118 * 20 19 18 36 36 H 1.07999 * 119.85733 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.93483 * 179.97438 * 22 21 20 38 38 H 1.07990 * 120.07523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6797 -0.0002 7 6 4.1764 3.3355 -1.1864 8 1 4.6095 4.3248 -1.1917 9 6 3.8172 2.7287 -2.3821 10 7 2.8593 1.8262 -2.4002 11 14 4.6930 3.1930 -3.9653 12 1 5.8703 2.3085 -4.1575 13 1 3.7619 3.0338 -5.1111 14 1 5.1432 4.6060 -3.8858 15 6 4.1889 3.3830 1.2682 16 6 2.9291 4.1183 1.6465 17 6 2.3671 3.9062 2.8282 18 6 1.1317 4.6279 3.1993 19 6 0.5381 4.4072 4.4426 20 6 -0.6147 5.0844 4.7833 21 6 -1.1818 5.9811 3.8953 22 6 -0.5975 6.2052 2.6615 23 6 0.5554 5.5344 2.3087 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 3.9565 0.7805 -0.8891 28 1 3.9558 0.7810 0.8908 29 1 2.6080 1.4024 -3.2357 30 1 5.0068 4.0953 1.1594 31 1 4.4365 2.6619 2.0472 32 1 2.4841 4.8183 0.9548 33 1 2.8120 3.2059 3.5198 34 1 0.9800 3.7077 5.1369 35 1 -1.0778 4.9112 5.7434 36 1 -2.0844 6.5085 4.1665 37 1 -1.0452 6.9062 1.9726 38 1 1.0108 5.7105 1.3455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177622574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -29.473712 kcal Electronic energy + Delta-G solvation = -21275.863190 eV Core-core repulsion = 18084.278251 eV Total energy + Delta-G solvation = -3191.584939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72442 -40.00290 -38.02840 -36.46778 -35.28375 -33.20091 -31.83081 -30.99017 -29.64458 -27.66963 -27.12693 -24.32266 -23.56907 -22.53349 -21.52154 -20.18592 -18.75308 -18.04140 -17.96101 -17.25665 -16.86532 -16.52328 -16.22755 -15.77386 -15.53762 -15.23587 -14.67945 -14.21389 -14.19486 -13.89487 -13.81339 -13.71978 -13.45794 -12.95241 -12.77667 -12.65295 -12.40900 -12.29003 -12.07952 -12.02972 -11.78274 -11.67618 -11.34026 -10.97124 -10.91421 -10.48926 -9.83807 -9.11635 -8.85253 -7.98067 -5.23143 0.12078 0.52292 1.48250 1.50433 1.58079 1.74567 2.09192 2.36941 2.57697 3.06623 3.23005 3.60318 3.93358 3.98858 4.13696 4.26914 4.35023 4.38724 4.45732 4.52869 4.56271 4.60585 4.65831 4.73636 4.84034 4.89405 5.06953 5.16068 5.17900 5.19939 5.50515 5.57621 5.62357 5.63556 5.83343 6.00197 6.05298 6.16366 6.23153 7.01185 7.55640 7.80291 8.14244 9.11144 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.005564 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.305501 B = 5031.431554 C = 5628.851889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.389 6.389 3 C 0.463 3.537 4 O -0.532 6.532 5 C 0.186 3.814 6 N -0.575 5.575 7 C -0.257 4.257 8 H 0.081 0.919 9 C -0.048 4.048 10 N -0.924 5.924 11 Si 0.967 3.033 12 H -0.279 1.279 13 H -0.306 1.306 14 H -0.274 1.274 15 C 0.163 3.837 16 C -0.118 4.118 17 C -0.157 4.157 18 C -0.056 4.056 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.142 4.142 24 H 0.125 0.875 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.249 0.751 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 0.977 12.843 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.306 6.306 3 C 0.304 3.696 4 O -0.418 6.418 5 C 0.057 3.943 6 N -0.293 5.293 7 C -0.387 4.387 8 H 0.099 0.901 9 C -0.243 4.243 10 N -0.571 5.571 11 Si 0.797 3.203 12 H -0.206 1.206 13 H -0.233 1.233 14 H -0.199 1.199 15 C 0.038 3.962 16 C -0.139 4.139 17 C -0.176 4.176 18 C -0.056 4.056 19 C -0.145 4.145 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.160 4.160 24 H 0.143 0.857 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.887 1.223 12.695 13.333 hybrid contribution -0.374 0.420 -1.693 1.784 sum -4.261 1.643 11.002 11.912 Atomic orbital electron populations 1.23069 0.77955 1.03855 1.00288 1.86500 1.22836 1.35841 1.85430 1.25719 0.94045 0.80264 0.69536 1.90461 1.67296 1.37420 1.46666 1.20544 0.85112 0.86518 1.02163 1.44555 1.75084 1.07515 1.02175 1.19565 1.33524 1.01606 0.83976 0.90092 1.25413 0.97950 1.00315 1.00576 1.70038 1.27862 1.32876 1.26324 0.85257 0.77982 0.78060 0.79039 1.20583 1.23346 1.19901 1.20368 0.93464 0.95084 0.87259 1.24146 0.98755 0.96631 0.94324 1.21638 0.95730 1.02298 0.97955 1.19354 0.95475 0.96047 0.94759 1.21514 0.96832 1.00677 0.95507 1.21446 0.95497 0.96169 1.00639 1.21494 1.00851 0.99213 0.93579 1.21304 0.95440 0.99991 0.97911 1.21409 0.97533 0.98058 0.99037 0.85731 0.93466 0.95022 0.89000 0.89208 0.94161 0.90955 0.90097 0.90639 0.85208 0.84216 0.82972 0.83405 0.85078 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 10.56 113.37 1.20 2.74 16 2 O -0.39 -17.07 10.57 -51.38 -0.54 -17.62 16 3 C 0.46 22.78 6.03 71.24 0.43 23.21 16 4 O -0.53 -29.46 14.57 21.96 0.32 -29.14 16 5 C 0.19 8.53 5.58 85.63 0.48 9.01 16 6 N -0.57 -27.18 2.06 -710.68 -1.46 -28.64 16 7 C -0.26 -13.56 9.68 84.03 0.81 -12.75 16 8 H 0.08 4.20 7.96 -2.91 -0.02 4.18 16 9 C -0.05 -2.57 4.85 84.86 0.41 -2.16 16 10 N -0.92 -52.84 9.05 21.65 0.20 -52.65 16 11 Si 0.97 44.36 29.63 68.60 2.03 46.39 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 15 C 0.16 6.29 6.16 85.63 0.53 6.82 16 16 C -0.12 -4.74 7.93 24.53 0.19 -4.55 16 17 C -0.16 -5.54 9.52 23.65 0.23 -5.31 16 18 C -0.06 -1.93 5.87 -20.12 -0.12 -2.05 16 19 C -0.13 -3.51 9.79 22.52 0.22 -3.29 16 20 C -0.12 -2.79 10.03 22.23 0.22 -2.57 16 21 C -0.13 -3.21 10.04 22.32 0.22 -2.99 16 22 C -0.13 -3.77 10.03 22.23 0.22 -3.55 16 23 C -0.14 -5.10 9.40 22.52 0.21 -4.89 16 24 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 25 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 26 H 0.03 1.26 8.13 -2.39 -0.02 1.24 16 27 H 0.09 4.61 6.34 -2.39 -0.02 4.59 16 28 H 0.09 3.36 7.86 -2.39 -0.02 3.34 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.07 2.63 8.08 -2.39 -0.02 2.61 16 31 H 0.08 2.62 7.51 -2.39 -0.02 2.60 16 32 H 0.08 3.53 6.04 -2.91 -0.02 3.51 16 33 H 0.13 3.88 7.87 -2.91 -0.02 3.86 16 34 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.10 3.95 6.17 -2.92 -0.02 3.93 16 Total: -1.00 -68.30 325.43 6.85 -61.45 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 1.05 Total: 22.51 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.26 Total: -2.31 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -1.27 Total: -81.29 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.22 Total: -46.76 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -68.30 6.85 -61.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177622574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.981 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds