Wall clock time and date at job start Mon Mar 30 2020 01:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00018 * 2 1 4 4 C 1.50699 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.38286 * 119.97369 * 270.02242 * 4 3 2 6 6 C 1.38245 * 120.11197 * 180.02562 * 5 4 3 7 7 C 1.38164 * 120.05145 * 359.67462 * 6 5 4 8 8 C 1.38710 * 119.94963 * 0.58232 * 7 6 5 9 9 O 1.35902 * 120.06026 * 179.71804 * 8 7 6 10 10 C 1.42903 * 116.99587 * 359.72489 * 9 8 7 11 11 C 1.52996 * 109.46740 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00037 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99804 * 11 10 9 14 14 N 8.62901 * 137.80452 * 302.11197 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99760 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.38124 * 119.97121 * 90.00489 * 4 3 2 25 25 H 1.09004 * 109.47380 * 60.00382 * 1 2 3 26 26 H 1.09000 * 109.47453 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47328 * 300.00009 * 1 2 3 28 28 H 1.09004 * 109.46499 * 60.00102 * 3 2 1 29 29 H 1.08999 * 109.46824 * 300.00231 * 3 2 1 30 30 H 1.08000 * 119.94551 * 0.02562 * 5 4 3 31 31 H 1.07996 * 119.97006 * 179.97438 * 6 5 4 32 32 H 1.08009 * 120.02587 * 180.29688 * 7 6 5 33 33 H 1.08997 * 109.47067 * 59.99825 * 10 9 8 34 34 H 1.08996 * 109.47310 * 299.99894 * 10 9 8 35 35 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 36 36 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 38 38 H 1.08008 * 120.02536 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2007 1.1316 1.1988 6 6 5.5789 1.0230 1.2028 7 6 6.2715 0.9621 0.0088 8 6 5.5841 1.0223 -1.1944 9 8 6.2636 0.9684 -2.3701 10 6 7.6861 0.8558 -2.2926 11 6 8.2715 0.8086 -3.7053 12 1 7.8016 0.0012 -4.2668 13 6 8.0187 2.0901 -4.3842 14 7 7.8219 3.0809 -4.9091 15 6 9.7795 0.5632 -3.6245 16 6 10.3363 0.3945 -5.0147 17 1 9.6802 0.4566 -5.8704 18 6 11.6843 0.1670 -5.1946 19 7 12.1710 0.0252 -6.4081 20 14 12.8191 0.0602 -3.7147 21 1 12.8964 -1.3484 -3.2509 22 1 14.1750 0.5311 -4.0957 23 1 12.2880 0.9130 -2.6211 24 6 4.2009 1.1318 -1.1956 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8464 -0.8900 30 1 3.6606 1.1738 2.1331 31 1 6.1140 0.9808 2.1398 32 1 7.3479 0.8724 0.0124 33 1 7.9496 -0.0578 -1.7598 34 1 8.0902 1.7165 -1.7599 35 1 9.9700 -0.3401 -3.0448 36 1 10.2607 1.4133 -3.1412 37 1 13.1192 -0.1351 -6.5346 38 1 3.6629 1.1748 -2.1312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179115953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:40 Heat of formation + Delta-G solvation = -40.508848 kcal Electronic energy + Delta-G solvation = -19798.208658 eV Core-core repulsion = 16606.145200 eV Total energy + Delta-G solvation = -3192.063459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27075 -38.55435 -37.38663 -36.16398 -33.87062 -32.14655 -32.04968 -30.19663 -27.75558 -27.49592 -25.65815 -23.96207 -22.67703 -21.56947 -21.09548 -17.97401 -17.28043 -17.03762 -16.68832 -16.35743 -16.10884 -15.57778 -15.39994 -15.03996 -14.42400 -14.01270 -13.69159 -13.45245 -13.18475 -12.79877 -12.57182 -12.52414 -12.36881 -12.22925 -11.83431 -11.69526 -11.48013 -11.35123 -11.18046 -10.79606 -10.72159 -10.49367 -10.16639 -10.01966 -9.89297 -9.42300 -9.05310 -8.67888 -8.23459 -6.16455 -4.18394 1.09658 1.37082 3.12545 3.21603 3.29939 3.31014 3.38542 3.53404 3.58185 3.93506 4.32444 4.55285 4.59575 4.66243 4.83404 4.93728 5.00621 5.05286 5.08618 5.16026 5.17557 5.20238 5.31472 5.34851 5.39653 5.52899 5.60605 5.87592 6.00946 6.12978 6.22335 6.31623 6.41908 6.64183 6.78117 6.81336 6.98585 7.40449 7.55210 8.30990 8.36529 8.86551 9.42038 10.96422 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.003199 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.612583 B = 8749.338745 C = 9189.837876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.104 3.896 4 C -0.058 4.058 5 C -0.143 4.143 6 C -0.082 4.082 7 C -0.203 4.203 8 C 0.137 3.863 9 O -0.312 6.312 10 C 0.063 3.937 11 C 0.022 3.978 12 H 0.119 0.881 13 C 0.241 3.759 14 N -0.460 5.460 15 C -0.002 4.002 16 C -0.531 4.531 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.264 1.264 24 C -0.133 4.133 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.266 0.734 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.494 -0.293 18.084 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.027 3.973 4 C -0.058 4.058 5 C -0.161 4.161 6 C -0.100 4.100 7 C -0.221 4.221 8 C 0.091 3.909 9 O -0.225 6.225 10 C -0.013 4.013 11 C 0.001 3.999 12 H 0.137 0.863 13 C -0.077 4.077 14 N -0.136 5.136 15 C -0.041 4.041 16 C -0.568 4.568 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.531 5.531 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.152 4.152 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.576 1.017 16.965 25.178 hybrid contribution 0.853 -0.267 0.931 1.290 sum -17.723 0.751 17.896 25.198 Atomic orbital electron populations 1.22768 0.80970 1.02921 0.99987 1.87992 1.19590 1.27293 1.95402 1.21340 0.89683 0.85193 1.01040 1.19272 0.93744 0.99997 0.92774 1.20877 0.94258 1.03743 0.97248 1.20910 0.93975 0.97614 0.97529 1.21399 1.00828 1.07721 0.92190 1.18977 0.91668 0.95192 0.85061 1.86132 1.21054 1.87622 1.27723 1.23089 0.77408 1.02541 0.98260 1.19013 1.00488 0.89096 0.91340 0.86289 1.28859 0.91435 0.94239 0.93133 1.81128 1.10677 1.12429 1.09374 1.19633 0.86778 0.97853 0.99802 1.20953 0.94230 1.50641 0.91019 0.90572 1.24979 0.98033 0.94243 0.95756 1.69896 1.13967 1.48372 1.20909 0.86823 0.80464 0.78908 0.83405 1.19895 1.21194 1.18851 1.20295 0.91200 1.05184 0.98514 0.93943 0.89486 0.94078 0.92248 0.92188 0.86063 0.85630 0.84942 0.89870 0.91342 0.94436 0.95357 0.92424 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.02 10.69 -35.23 -0.38 -4.40 16 3 C 0.10 0.95 6.06 36.01 0.22 1.17 16 4 C -0.06 -0.65 5.51 -104.65 -0.58 -1.22 16 5 C -0.14 -1.47 9.70 -39.56 -0.38 -1.85 16 6 C -0.08 -0.85 10.04 -39.61 -0.40 -1.24 16 7 C -0.20 -2.39 9.04 -39.43 -0.36 -2.75 16 8 C 0.14 1.87 6.69 -39.22 -0.26 1.60 16 9 O -0.31 -4.71 9.87 -19.43 -0.19 -4.90 16 10 C 0.06 0.89 4.09 37.16 0.15 1.04 16 11 C 0.02 0.39 2.45 -93.41 -0.23 0.16 16 12 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 13 C 0.24 4.98 13.72 -20.68 -0.28 4.70 16 14 N -0.46 -10.42 18.55 42.25 0.78 -9.64 16 15 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 16 C -0.53 -14.02 9.15 -34.44 -0.32 -14.34 16 17 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 19 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 20 Si 0.88 20.12 27.47 -169.99 -4.67 15.45 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 24 C -0.13 -1.70 9.64 -39.43 -0.38 -2.08 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 1.37 6.30 -52.48 -0.33 1.04 16 33 H 0.08 0.98 7.65 -51.93 -0.40 0.58 16 34 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 35 H 0.04 0.71 7.58 -51.93 -0.39 0.31 16 36 H 0.03 0.59 7.19 -51.93 -0.37 0.22 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -32.30 332.80 -5.83 -38.13 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.27 Total: -2.07 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.90 Total: -11.74 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 1.56 Total: -35.49 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.57 Total: -9.30 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.30 -5.83 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179115953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.374 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds