Wall clock time and date at job start Mon Mar 30 2020 01:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00018 * 2 1 4 4 C 1.50699 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.38286 * 119.97369 * 270.02242 * 4 3 2 6 6 C 1.38245 * 120.11197 * 180.02562 * 5 4 3 7 7 C 1.38164 * 120.05145 * 359.67462 * 6 5 4 8 8 C 1.38710 * 119.94963 * 0.58232 * 7 6 5 9 9 O 1.35902 * 120.06026 * 179.71804 * 8 7 6 10 10 C 1.42903 * 116.99587 * 359.72489 * 9 8 7 11 11 C 1.52996 * 109.46740 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00037 * 11 10 9 13 13 C 1.47204 * 109.47042 * 64.99804 * 11 10 9 14 14 N 8.62901 * 137.80452 * 302.11197 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99760 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.38124 * 119.97121 * 90.00489 * 4 3 2 25 25 H 1.09004 * 109.47380 * 60.00382 * 1 2 3 26 26 H 1.09000 * 109.47453 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47328 * 300.00009 * 1 2 3 28 28 H 1.09004 * 109.46499 * 60.00102 * 3 2 1 29 29 H 1.08999 * 109.46824 * 300.00231 * 3 2 1 30 30 H 1.08000 * 119.94551 * 0.02562 * 5 4 3 31 31 H 1.07996 * 119.97006 * 179.97438 * 6 5 4 32 32 H 1.08009 * 120.02587 * 180.29688 * 7 6 5 33 33 H 1.08997 * 109.47067 * 59.99825 * 10 9 8 34 34 H 1.08996 * 109.47310 * 299.99894 * 10 9 8 35 35 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 36 36 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 37 37 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 38 38 H 1.08008 * 120.02536 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2007 1.1316 1.1988 6 6 5.5789 1.0230 1.2028 7 6 6.2715 0.9621 0.0088 8 6 5.5841 1.0223 -1.1944 9 8 6.2636 0.9684 -2.3701 10 6 7.6861 0.8558 -2.2926 11 6 8.2715 0.8086 -3.7053 12 1 7.8016 0.0012 -4.2668 13 6 8.0187 2.0901 -4.3842 14 7 7.8219 3.0809 -4.9091 15 6 9.7795 0.5632 -3.6245 16 6 10.3363 0.3945 -5.0147 17 1 9.6802 0.4566 -5.8704 18 6 11.6843 0.1670 -5.1946 19 7 12.1710 0.0252 -6.4081 20 14 12.8191 0.0602 -3.7147 21 1 12.8964 -1.3484 -3.2509 22 1 14.1750 0.5311 -4.0957 23 1 12.2880 0.9130 -2.6211 24 6 4.2009 1.1318 -1.1956 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8464 -0.8900 30 1 3.6606 1.1738 2.1331 31 1 6.1140 0.9808 2.1398 32 1 7.3479 0.8724 0.0124 33 1 7.9496 -0.0578 -1.7598 34 1 8.0902 1.7165 -1.7599 35 1 9.9700 -0.3401 -3.0448 36 1 10.2607 1.4133 -3.1412 37 1 13.1192 -0.1351 -6.5346 38 1 3.6629 1.1748 -2.1312 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179115953.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:39 Heat of formation + Delta-G solvation = -60.724137 kcal Electronic energy + Delta-G solvation = -19799.085259 eV Core-core repulsion = 16606.145200 eV Total energy + Delta-G solvation = -3192.940059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19981 -39.43343 -38.36200 -37.54316 -35.62475 -33.98156 -32.82096 -31.20360 -29.27175 -28.18534 -26.40027 -25.27648 -23.65665 -23.18827 -22.01074 -19.03996 -18.85578 -18.64933 -17.33922 -17.26032 -17.02109 -16.50731 -16.27792 -16.16163 -15.97522 -15.15803 -15.01929 -14.73789 -14.44133 -14.18478 -13.96480 -13.62282 -13.53003 -13.20103 -13.09582 -12.98296 -12.51768 -12.48331 -12.30883 -12.20487 -11.84313 -11.83295 -11.69807 -11.63338 -11.34165 -10.73582 -10.64902 -9.87827 -9.13722 -8.25225 -6.32290 0.27408 0.51473 1.44330 1.47318 1.57201 1.81327 1.91099 2.20162 2.41417 2.63207 3.05443 3.14220 3.21947 3.79046 3.89238 4.00804 4.08521 4.15489 4.28298 4.38240 4.40944 4.44612 4.47263 4.57031 4.58884 4.62012 4.70356 4.82865 4.88735 5.07640 5.15287 5.35839 5.37825 5.49848 5.59633 5.61642 5.83609 6.20957 6.22987 6.47087 6.68737 6.77395 7.32142 8.91721 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.003199 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.612583 B = 8749.338745 C = 9189.837876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.102 3.898 4 C -0.066 4.066 5 C -0.143 4.143 6 C -0.081 4.081 7 C -0.208 4.208 8 C 0.112 3.888 9 O -0.334 6.334 10 C 0.070 3.930 11 C 0.026 3.974 12 H 0.124 0.876 13 C 0.250 3.750 14 N -0.504 5.504 15 C 0.001 3.999 16 C -0.535 4.535 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.954 5.954 20 Si 0.950 3.050 21 H -0.256 1.256 22 H -0.297 1.297 23 H -0.232 1.232 24 C -0.155 4.155 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.824 -0.756 22.234 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.027 3.973 4 C -0.066 4.066 5 C -0.161 4.161 6 C -0.099 4.099 7 C -0.227 4.227 8 C 0.067 3.933 9 O -0.249 6.249 10 C -0.005 4.005 11 C 0.004 3.996 12 H 0.141 0.859 13 C -0.066 4.066 14 N -0.181 5.181 15 C -0.038 4.038 16 C -0.573 4.573 17 H 0.046 0.954 18 C -0.194 4.194 19 N -0.594 5.594 20 Si 0.773 3.227 21 H -0.180 1.180 22 H -0.223 1.223 23 H -0.154 1.154 24 C -0.174 4.174 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.951 0.556 21.139 28.396 hybrid contribution 0.809 -0.125 -0.413 0.917 sum -18.142 0.431 20.726 27.547 Atomic orbital electron populations 1.22951 0.79276 1.03850 1.01086 1.87938 1.21546 1.28040 1.95637 1.21415 0.88562 0.85083 1.02277 1.19574 0.94960 0.99472 0.92613 1.21252 0.94671 1.02407 0.97794 1.21305 0.94145 0.96225 0.98237 1.21648 1.01751 1.07384 0.91882 1.19194 0.91941 0.96973 0.85217 1.86065 1.21341 1.88371 1.29076 1.23005 0.77310 1.04771 0.95452 1.19077 0.99267 0.87473 0.93767 0.85859 1.29614 0.90265 0.94538 0.92216 1.81116 1.12069 1.14095 1.10870 1.19568 0.88210 0.99577 0.96423 1.21328 0.93855 1.49334 0.92758 0.95361 1.26072 1.00217 0.93985 0.99151 1.70090 1.14379 1.50889 1.24076 0.85667 0.77073 0.80286 0.79723 1.18008 1.22326 1.15442 1.20442 0.91419 1.06442 0.99072 0.93346 0.88737 0.92452 0.90055 0.91898 0.83649 0.82659 0.83304 0.86626 0.90117 0.90939 0.94541 0.92572 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.08 10.69 -148.98 -1.59 -9.67 16 3 C 0.10 1.72 6.06 71.24 0.43 2.15 16 4 C -0.07 -1.38 5.51 -19.88 -0.11 -1.49 16 5 C -0.14 -2.52 9.70 22.28 0.22 -2.31 16 6 C -0.08 -1.39 10.04 22.25 0.22 -1.16 16 7 C -0.21 -4.31 9.04 22.37 0.20 -4.10 16 8 C 0.11 2.91 6.69 22.51 0.15 3.06 16 9 O -0.33 -9.73 9.87 -92.45 -0.91 -10.65 16 10 C 0.07 1.79 4.09 71.98 0.29 2.09 16 11 C 0.03 0.87 2.45 -12.60 -0.03 0.84 16 12 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 13 C 0.25 10.41 13.72 89.42 1.23 11.63 16 14 N -0.50 -23.37 18.55 20.04 0.37 -23.00 16 15 C 0.00 0.03 3.49 29.85 0.10 0.13 16 16 C -0.53 -28.51 9.15 25.60 0.23 -28.27 16 17 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 18 C 0.00 0.14 5.47 84.66 0.46 0.60 16 19 N -0.95 -58.70 13.96 21.45 0.30 -58.41 16 20 Si 0.95 40.23 27.47 68.60 1.88 42.12 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.30 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.23 -8.55 6.54 99.48 0.65 -7.90 16 24 C -0.15 -3.91 9.64 22.37 0.22 -3.70 16 25 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 0.97 8.08 -2.38 -0.02 0.95 16 29 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.15 2.48 6.30 -2.91 -0.02 2.46 16 33 H 0.12 2.21 7.65 -2.39 -0.02 2.19 16 34 H 0.08 1.87 7.67 -2.39 -0.02 1.85 16 35 H 0.07 2.39 7.58 -2.38 -0.02 2.38 16 36 H 0.04 1.39 7.19 -2.39 -0.02 1.37 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -73.25 332.80 5.91 -67.34 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.99 Total: 11.27 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.87 Total: -19.00 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: 0.67 Total: -81.41 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -2.50 Total: -20.32 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.88 Total: 42.12 kcal Total: -73.25 5.91 -67.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179115953.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.614 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds