Wall clock time and date at job start Mon Mar 30 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99705 * 2 1 4 4 H 1.48505 * 109.47120 * 240.00208 * 3 2 1 5 5 H 1.48504 * 109.47487 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47428 * 120.00228 * 3 2 1 7 7 C 1.38953 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99651 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99793 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99531 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00230 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99869 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46906 * 181.39219 * 12 10 9 14 14 C 1.46907 * 110.99693 * 162.31132 * 13 12 10 15 15 C 1.50696 * 109.46922 * 189.99917 * 14 13 12 16 16 C 1.38228 * 119.61618 * 95.00678 * 15 14 13 17 17 C 1.38632 * 119.16220 * 179.97438 * 16 15 14 18 18 C 1.38677 * 118.41617 * 359.97438 * 17 16 15 19 19 C 1.38179 * 119.16795 * 0.27651 * 18 17 16 20 20 N 1.31858 * 119.62082 * 274.97691 * 15 14 13 21 21 C 1.46900 * 111.00198 * 286.26508 * 13 12 10 22 22 C 1.53000 * 117.49682 * 3.76269 * 21 13 12 23 23 C 1.53002 * 117.49868 * 295.13867 * 21 13 12 24 24 H 0.96998 * 120.00256 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00719 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.47276 * 61.39368 * 12 10 9 27 27 H 1.08995 * 109.47104 * 301.39366 * 12 10 9 28 28 H 1.09007 * 109.46856 * 69.99987 * 14 13 12 29 29 H 1.08997 * 109.47293 * 310.00575 * 14 13 12 30 30 H 1.07995 * 120.41972 * 359.94667 * 16 15 14 31 31 H 1.07994 * 120.79386 * 180.02562 * 17 16 15 32 32 H 1.08007 * 120.41496 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.61856 * 179.70375 * 19 18 17 34 34 H 1.08995 * 115.55040 * 149.46898 * 21 13 12 35 35 H 1.09000 * 117.49838 * 359.97438 * 22 21 13 36 36 H 1.08998 * 117.49597 * 145.02358 * 22 21 13 37 37 H 1.08993 * 117.49556 * 214.97865 * 23 21 13 38 38 H 1.09001 * 117.49618 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6965 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1982 -5.9793 0.0326 14 6 1.5382 -7.2235 0.4502 15 6 2.5794 -8.2815 0.7104 16 6 3.0434 -8.4814 1.9970 17 6 4.0009 -9.4575 2.2257 18 6 4.4574 -10.1998 1.1470 19 6 3.9508 -9.9398 -0.1120 20 7 3.0368 -9.0061 -0.2918 21 6 2.8603 -6.1454 -1.2681 22 6 2.5352 -5.1259 -2.3616 23 6 1.9884 -6.5517 -2.4579 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0002 26 1 0.6364 -4.9314 -0.9036 27 1 0.5983 -4.9101 0.8758 28 1 0.8665 -7.5611 -0.3392 29 1 0.9671 -7.0440 1.3610 30 1 2.6652 -7.8844 2.8136 31 1 4.3815 -9.6363 3.2204 32 1 5.2026 -10.9686 1.2884 33 1 4.3047 -10.5101 -0.9581 34 1 3.8765 -6.5379 -1.2316 35 1 1.8296 -4.3322 -2.1160 36 1 3.3376 -4.8475 -3.0448 37 1 2.4311 -7.2111 -3.2043 38 1 0.9235 -6.6961 -2.2753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180857198.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:09 Heat of formation + Delta-G solvation = 47.512332 kcal Electronic energy + Delta-G solvation = -20963.484747 eV Core-core repulsion = 17807.530925 eV Total energy + Delta-G solvation = -3155.953823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31498 -39.12762 -37.11524 -33.84285 -33.75708 -32.42746 -31.42687 -31.04391 -27.85773 -25.48732 -24.15859 -23.46373 -22.40767 -21.60124 -20.10145 -18.74644 -17.71783 -16.96699 -16.63007 -16.19275 -15.83448 -15.47189 -14.94105 -14.49035 -14.05461 -13.81468 -13.49269 -13.41228 -13.16652 -12.93145 -12.70849 -12.24926 -11.76558 -11.54761 -11.43219 -11.23404 -10.95681 -10.89519 -10.40458 -10.27826 -10.15903 -9.88233 -9.74298 -9.40775 -9.38012 -9.03064 -8.39799 -7.89268 -7.77478 -6.35681 -3.76049 1.08680 1.28229 3.23822 3.28893 3.33349 3.63133 3.97711 4.14815 4.26989 4.29020 4.42657 4.68636 4.79793 5.03358 5.06783 5.14705 5.24735 5.27886 5.32836 5.38580 5.50821 5.53982 5.70110 5.75603 5.78001 5.89758 6.01365 6.12744 6.17000 6.31455 6.36326 6.47411 6.62075 6.67963 7.25156 7.36862 7.60626 8.03051 8.12471 8.69533 9.25186 9.61632 10.14926 10.82325 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031990 B = 0.003905 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.052026 B = 7169.212856 C = 7439.108337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.295 4.295 8 H 0.101 0.899 9 N -0.570 5.570 10 C 0.450 3.550 11 O -0.567 6.567 12 C 0.037 3.963 13 N -0.479 5.479 14 C 0.102 3.898 15 C 0.147 3.853 16 C -0.152 4.152 17 C -0.078 4.078 18 C -0.181 4.181 19 C 0.096 3.904 20 N -0.471 5.471 21 C 0.059 3.941 22 C -0.175 4.175 23 C -0.212 4.212 24 H 0.271 0.729 25 H 0.391 0.609 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -18.284 1.229 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.425 4.425 8 H 0.119 0.881 9 N -0.208 5.208 10 C 0.234 3.766 11 O -0.450 6.450 12 C -0.094 4.094 13 N -0.202 5.202 14 C -0.026 4.026 15 C 0.008 3.992 16 C -0.172 4.172 17 C -0.105 4.105 18 C -0.201 4.201 19 C -0.062 4.062 20 N -0.180 5.180 21 C -0.050 4.050 22 C -0.212 4.212 23 C -0.251 4.251 24 H 0.081 0.919 25 H 0.224 0.776 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.527 -17.840 0.760 18.034 hybrid contribution -0.394 0.523 0.303 0.721 sum 2.133 -17.317 1.063 17.480 Atomic orbital electron populations 1.69604 1.05880 1.28095 1.51063 1.25221 0.95601 0.99568 0.97583 0.85950 0.78757 0.80671 0.79017 1.19987 1.21056 1.19976 1.19623 0.93266 0.82230 1.47385 0.88068 1.41843 1.09062 1.04491 1.65359 1.19603 0.88482 0.84291 0.84176 1.90537 1.13517 1.86805 1.54097 1.22022 0.94048 0.91634 1.01680 1.61615 1.29446 1.01813 1.27328 1.21019 0.92680 0.87737 1.01168 1.21031 0.95428 0.93828 0.88868 1.21981 0.98234 0.98587 0.98409 1.21561 0.95230 0.94261 0.99402 1.22093 1.02038 1.01663 0.94282 1.22705 0.92826 0.94303 0.96352 1.67520 1.10612 1.05158 1.34749 1.22339 0.97724 1.02465 0.82484 1.23287 1.03719 0.92567 1.01617 1.23320 0.99678 0.98647 1.03445 0.91946 0.77639 0.92688 0.89449 0.92734 0.89269 0.84711 0.85070 0.85216 0.83120 0.86966 0.88038 0.88950 0.89036 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 10 C 0.45 10.62 5.84 -10.98 -0.06 10.56 16 11 O -0.57 -15.46 14.78 5.55 0.08 -15.38 16 12 C 0.04 0.68 5.00 -4.97 -0.02 0.65 16 13 N -0.48 -8.30 4.33 -229.51 -0.99 -9.29 16 14 C 0.10 1.41 5.17 -4.97 -0.03 1.38 16 15 C 0.15 1.99 5.86 -82.59 -0.48 1.51 16 16 C -0.15 -1.81 9.72 -39.44 -0.38 -2.19 16 17 C -0.08 -0.79 10.18 -39.27 -0.40 -1.19 16 18 C -0.18 -1.73 10.11 -39.44 -0.40 -2.13 16 19 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 20 N -0.47 -6.39 9.67 -9.48 -0.09 -6.48 16 21 C 0.06 1.03 4.49 -67.71 -0.30 0.72 16 22 C -0.17 -3.13 8.47 -26.73 -0.23 -3.35 16 23 C -0.21 -3.18 9.26 -26.73 -0.25 -3.43 16 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 26 H 0.06 0.93 5.99 -51.93 -0.31 0.62 16 27 H 0.09 1.39 7.77 -51.93 -0.40 0.99 16 28 H 0.05 0.73 6.87 -51.92 -0.36 0.37 16 29 H 0.09 1.05 7.74 -51.93 -0.40 0.65 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.11 2.09 8.14 -51.93 -0.42 1.66 16 35 H 0.10 2.02 4.91 -51.93 -0.26 1.77 16 36 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.22 7.15 -51.93 -0.37 0.85 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -32.15 318.94 -8.44 -40.60 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -4.89 Total: 12.57 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.00 Total: -4.56 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.42 Total: -54.31 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.08 Total: -15.38 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.15 -8.44 -40.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180857198.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.109 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds