Wall clock time and date at job start Mon Mar 30 2020 01:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99687 * 2 1 4 4 O 1.20826 * 120.00513 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99750 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47516 * 180.02562 * 5 3 2 7 7 C 1.36939 * 120.00192 * 270.00455 * 6 5 3 8 8 H 1.07996 * 119.99950 * 143.80661 * 7 6 5 9 9 C 1.38816 * 119.99513 * 323.80687 * 7 6 5 10 10 N 1.31625 * 119.99915 * 156.36394 * 9 7 6 11 11 Si 1.86795 * 120.00121 * 336.36244 * 9 7 6 12 12 H 1.48503 * 109.47393 * 95.29933 * 11 9 7 13 13 H 1.48501 * 109.47221 * 215.30143 * 11 9 7 14 14 H 1.48505 * 109.47276 * 335.29894 * 11 9 7 15 15 C 1.46500 * 119.99992 * 89.99334 * 6 5 3 16 16 C 1.50697 * 109.47751 * 264.63638 * 15 6 5 17 17 C 1.32564 * 120.00003 * 127.30613 * 16 15 6 18 18 C 1.47812 * 119.99915 * 7.79886 * 17 16 15 19 19 C 1.39532 * 120.14283 * 36.50961 * 18 17 16 20 20 C 1.37973 * 119.85464 * 179.97438 * 19 18 17 21 21 C 1.38344 * 120.14488 * 359.97172 * 20 19 18 22 22 C 1.38350 * 120.28373 * 0.02562 * 21 20 19 23 23 C 1.37967 * 120.14153 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47022 * 59.99463 * 1 2 3 25 25 H 1.09001 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46899 * 299.99891 * 1 2 3 27 27 H 1.09001 * 109.47790 * 60.00161 * 5 3 2 28 28 H 1.08999 * 109.47365 * 300.00166 * 5 3 2 29 29 H 0.96991 * 119.99614 * 180.02562 * 10 9 7 30 30 H 1.09003 * 109.47019 * 144.63523 * 15 6 5 31 31 H 1.09004 * 109.47209 * 24.64033 * 15 6 5 32 32 H 1.08000 * 120.00055 * 307.31300 * 16 15 6 33 33 H 1.08002 * 119.99832 * 187.79475 * 17 16 15 34 34 H 1.07993 * 120.07159 * 359.95060 * 19 18 17 35 35 H 1.08003 * 119.93124 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.85734 * 179.74930 * 21 20 19 37 37 H 1.07998 * 119.92663 * 179.97438 * 22 21 20 38 38 H 1.08008 * 120.07161 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1763 3.3367 -1.1846 8 1 3.9086 4.3791 -1.2746 9 6 4.7175 2.6627 -2.2707 10 7 4.4904 3.0948 -3.4931 11 14 5.7681 1.1425 -1.9976 12 1 4.9234 -0.0723 -2.1241 13 1 6.8511 1.1003 -3.0127 14 1 6.3651 1.1909 -0.6387 15 6 4.1889 3.3819 1.2701 16 6 2.9361 4.1342 1.6384 17 6 2.3886 3.9650 2.8338 18 6 3.0950 3.1764 3.8652 19 6 4.4849 3.2428 3.9682 20 6 5.1382 2.5045 4.9335 21 6 4.4180 1.7001 5.7986 22 6 3.0397 1.6299 5.7017 23 6 2.3746 2.3623 4.7402 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9565 0.7807 -0.8891 28 1 3.9557 0.7810 0.8908 29 1 4.8683 2.6236 -4.2520 30 1 5.0166 4.0835 1.1662 31 1 4.4215 2.6587 2.0518 32 1 2.4842 4.8111 0.9284 33 1 1.4265 4.4036 3.0540 34 1 5.0482 3.8703 3.2936 35 1 6.2139 2.5552 5.0147 36 1 4.9344 1.1210 6.5499 37 1 2.4834 0.9997 6.3798 38 1 1.2985 2.3070 4.6658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255218694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:23 Heat of formation + Delta-G solvation = -21.163444 kcal Electronic energy + Delta-G solvation = -21507.187611 eV Core-core repulsion = 18315.963032 eV Total energy + Delta-G solvation = -3191.224579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25360 -40.23700 -38.20436 -36.95528 -35.41442 -33.64656 -31.88226 -30.87560 -29.83194 -27.91439 -27.63915 -24.37248 -23.31734 -22.84062 -21.95995 -20.21661 -18.97013 -18.61013 -17.87898 -17.27845 -17.14154 -16.80535 -16.54889 -16.13139 -15.53487 -15.21958 -14.85311 -14.48427 -14.36541 -14.22083 -14.17614 -13.85506 -13.47513 -13.39628 -13.04546 -12.84793 -12.62979 -12.37776 -12.15080 -11.86204 -11.70871 -11.67751 -11.63687 -11.31883 -10.72913 -10.56974 -9.72359 -9.05507 -9.00548 -8.26029 -5.67846 0.20914 0.56760 1.29981 1.36779 1.45201 1.55373 1.58435 1.90018 2.37827 2.95695 3.02320 3.31355 3.91178 4.07006 4.12920 4.17754 4.21237 4.27645 4.31908 4.34378 4.34928 4.40162 4.50590 4.66412 4.66795 4.70100 4.84540 5.06591 5.14478 5.25870 5.49114 5.51031 5.58450 5.68290 5.79768 5.80716 5.97379 6.13698 6.19366 6.74984 7.02422 7.48506 7.86688 8.93062 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.006826 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.193487 B = 4100.782525 C = 4798.158021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.426 3.574 4 O -0.518 6.518 5 C 0.135 3.865 6 N -0.578 5.578 7 C -0.267 4.267 8 H 0.036 0.964 9 C -0.019 4.019 10 N -0.940 5.940 11 Si 0.933 3.067 12 H -0.266 1.266 13 H -0.299 1.299 14 H -0.238 1.238 15 C 0.160 3.840 16 C -0.127 4.127 17 C -0.144 4.144 18 C -0.062 4.062 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.045 0.955 25 H 0.134 0.866 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.266 0.734 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 -7.720 18.291 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C 0.266 3.734 4 O -0.405 6.405 5 C 0.006 3.994 6 N -0.298 5.298 7 C -0.396 4.396 8 H 0.053 0.947 9 C -0.216 4.216 10 N -0.583 5.583 11 Si 0.759 3.241 12 H -0.193 1.193 13 H -0.227 1.227 14 H -0.161 1.161 15 C 0.037 3.963 16 C -0.148 4.148 17 C -0.163 4.163 18 C -0.062 4.062 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.152 0.848 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.752 -7.402 18.123 19.655 hybrid contribution -0.411 0.138 -1.030 1.118 sum -2.164 -7.265 17.093 18.698 Atomic orbital electron populations 1.23402 0.76225 1.05175 1.01612 1.86559 1.24272 1.34093 1.84433 1.26286 0.94446 0.81165 0.71491 1.90559 1.67288 1.37388 1.45254 1.21390 0.85636 0.88460 1.03907 1.44015 1.74661 1.08213 1.02895 1.18546 1.36459 0.95805 0.88817 0.94667 1.26137 0.99008 1.02077 0.94372 1.70046 1.45123 1.44230 0.98856 0.86008 0.79354 0.79366 0.79369 1.19337 1.22736 1.16077 1.20797 0.93943 0.95400 0.86155 1.23809 0.99041 0.96720 0.95198 1.21547 0.99349 1.01833 0.93596 1.19164 0.93760 0.97456 0.95814 1.21626 0.93480 1.00688 0.98833 1.21389 1.01092 0.96757 0.94945 1.21528 0.94230 0.98949 0.99638 1.21363 0.95142 0.99302 0.98224 1.21412 1.00166 0.97154 0.95744 0.93605 0.84839 0.92264 0.90023 0.86219 0.92451 0.91363 0.89272 0.90056 0.86690 0.85632 0.83930 0.83506 0.83796 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.56 113.37 1.20 2.03 16 2 O -0.38 -13.81 10.57 -51.40 -0.54 -14.35 16 3 C 0.43 18.51 8.03 71.24 0.57 19.09 16 4 O -0.52 -25.48 14.90 21.96 0.33 -25.15 16 5 C 0.13 5.73 5.15 85.63 0.44 6.17 16 6 N -0.58 -27.24 1.63 -710.68 -1.16 -28.40 16 7 C -0.27 -15.21 9.91 84.03 0.83 -14.37 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 9 C -0.02 -1.07 5.29 84.86 0.45 -0.62 16 10 N -0.94 -58.53 13.97 21.65 0.30 -58.22 16 11 Si 0.93 42.98 25.08 68.60 1.72 44.70 16 12 H -0.27 -11.58 6.65 99.48 0.66 -10.92 16 13 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.24 -9.94 7.11 99.48 0.71 -9.23 16 15 C 0.16 6.31 4.43 85.63 0.38 6.69 16 16 C -0.13 -4.98 8.49 24.53 0.21 -4.77 16 17 C -0.14 -4.80 9.80 23.65 0.23 -4.57 16 18 C -0.06 -1.80 5.21 -20.12 -0.10 -1.90 16 19 C -0.13 -3.40 7.30 22.52 0.16 -3.24 16 20 C -0.12 -2.65 10.03 22.23 0.22 -2.43 16 21 C -0.13 -2.37 10.04 22.32 0.22 -2.15 16 22 C -0.12 -2.47 10.03 22.23 0.22 -2.24 16 23 C -0.13 -3.17 9.79 22.52 0.22 -2.95 16 24 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 25 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 27 H 0.08 3.66 3.18 -2.39 -0.01 3.66 16 28 H 0.12 4.15 7.86 -2.39 -0.02 4.13 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.07 2.66 7.90 -2.39 -0.02 2.64 16 31 H 0.09 3.08 4.41 -2.38 -0.01 3.07 16 32 H 0.08 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 34 H 0.13 3.36 6.15 -2.91 -0.02 3.35 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -71.37 319.67 6.92 -64.45 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.01 Total: 22.24 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.26 Total: -5.27 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -0.85 Total: -86.62 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.22 Total: -39.50 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.72 Total: 44.70 kcal Total: -71.37 6.92 -64.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255218694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.289 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds