Wall clock time and date at job start Mon Mar 30 2020 01:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99971 * 2 1 4 4 O 1.20819 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99891 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.79499 * 335.14479 * 5 3 2 7 7 C 1.52900 * 109.63281 * 95.63725 * 5 3 2 8 8 C 1.50716 * 109.94600 * 170.11848 * 7 5 3 9 9 C 1.38679 * 118.47744 * 163.20783 * 8 7 5 10 10 C 1.38037 * 120.34736 * 179.78703 * 9 8 7 11 11 C 1.38265 * 119.82341 * 359.97438 * 10 9 8 12 12 C 1.38016 * 119.87146 * 0.08227 * 11 10 9 13 13 C 1.37828 * 121.66491 * 343.13281 * 8 7 5 14 14 C 1.50617 * 121.85666 * 0.33055 * 13 8 7 15 15 N 1.46626 * 110.50031 * 342.59581 * 14 13 8 16 16 C 1.46905 * 110.99947 * 175.88335 * 15 14 13 17 17 C 1.50701 * 109.47424 * 296.07775 * 16 15 14 18 18 H 1.07997 * 119.99878 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00043 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00254 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00178 * 0.02562 * 19 17 16 22 22 H 1.48489 * 109.47235 * 89.99572 * 21 19 17 23 23 H 1.48498 * 109.47022 * 210.00055 * 21 19 17 24 24 H 1.48501 * 109.46724 * 329.99653 * 21 19 17 25 25 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47147 * 299.99533 * 1 2 3 27 27 H 1.09003 * 109.47318 * 60.00009 * 1 2 3 28 28 H 1.08997 * 109.38940 * 49.97308 * 7 5 3 29 29 H 1.08997 * 109.30893 * 290.21648 * 7 5 3 30 30 H 1.07993 * 119.83016 * 359.75992 * 9 8 7 31 31 H 1.07998 * 120.09254 * 179.97438 * 10 9 8 32 32 H 1.08006 * 120.06277 * 180.02562 * 11 10 9 33 33 H 1.08005 * 119.80824 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.26776 * 222.34033 * 14 13 8 35 35 H 1.09000 * 109.27614 * 102.86220 * 14 13 8 36 36 H 1.08998 * 109.46735 * 56.08200 * 16 15 14 37 37 H 1.09005 * 109.47058 * 176.07938 * 16 15 14 38 38 H 0.96997 * 120.00014 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9834 0.3649 0.4320 7 6 4.0725 1.4427 -1.4324 8 6 5.5451 1.7636 -1.4232 9 6 6.2634 1.6067 -2.5991 10 6 7.6131 1.8937 -2.6354 11 6 8.2521 2.3404 -1.4935 12 6 7.5383 2.4958 -0.3225 13 6 6.1821 2.2056 -0.2837 14 6 5.4473 2.3866 1.0185 15 7 4.0002 2.4397 0.7884 16 6 3.2676 2.5179 2.0594 17 6 3.5035 1.2591 2.8536 18 1 4.1349 0.4791 2.4544 19 6 2.9142 1.1036 4.0902 20 7 3.1197 0.0048 4.7832 21 14 1.8227 2.4530 4.7811 22 1 0.4186 2.2189 4.3584 23 1 1.9015 2.4429 6.2640 24 1 2.2804 3.7701 4.2701 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.5282 2.2540 -1.9157 29 1 3.9072 0.5171 -1.9838 30 1 5.7643 1.2578 -3.4909 31 1 8.1686 1.7697 -3.5532 32 1 9.3079 2.5665 -1.5177 33 1 8.0385 2.8444 0.5690 34 1 5.7711 3.3154 1.4882 35 1 5.6760 1.5509 1.6798 36 1 3.6191 3.3782 2.6289 37 1 2.2017 2.6262 1.8583 38 1 2.7054 -0.1044 5.6534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263715745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:44 Heat of formation + Delta-G solvation = -48.046576 kcal Electronic energy + Delta-G solvation = -21835.808807 eV Core-core repulsion = 18643.418488 eV Total energy + Delta-G solvation = -3192.390319 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43487 -39.31042 -36.95972 -35.58476 -33.24420 -32.32018 -31.23700 -29.61636 -27.39657 -27.28248 -24.40036 -24.04694 -21.99566 -21.33343 -20.65922 -18.85532 -17.45391 -16.79842 -16.60950 -15.92773 -15.69858 -15.03905 -14.83168 -14.45171 -14.13756 -13.91268 -13.47527 -13.07817 -12.90141 -12.68936 -12.54846 -12.25628 -12.20101 -11.73199 -11.67770 -11.33494 -11.18332 -10.95474 -10.81517 -10.53714 -10.51572 -10.13517 -9.98297 -9.73249 -9.46320 -8.65701 -8.58890 -8.31417 -7.41674 -6.18343 -4.19790 1.57160 1.59619 2.78799 3.20883 3.24725 3.31820 3.37987 3.96345 4.34238 4.64868 4.93636 5.00203 5.13516 5.17867 5.22518 5.33602 5.44834 5.45203 5.56773 5.64071 5.70438 5.76516 5.85479 5.89024 6.07407 6.13841 6.21000 6.38854 6.46543 6.63804 6.67002 6.77335 6.87159 6.90386 7.08484 7.21082 7.40071 7.75773 7.85473 8.31653 8.40822 8.81023 9.44030 10.93723 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.006886 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.702380 B = 4065.177409 C = 5111.561711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.486 3.514 4 O -0.499 6.499 5 C 0.102 3.898 6 H 0.083 0.917 7 C -0.067 4.067 8 C -0.066 4.066 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.118 4.118 13 C -0.063 4.063 14 C 0.092 3.908 15 N -0.507 5.507 16 C 0.136 3.864 17 C -0.561 4.561 18 H 0.077 0.923 19 C 0.079 3.921 20 N -0.892 5.892 21 Si 0.873 3.127 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.262 1.262 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 1.443 -12.915 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.328 3.672 4 O -0.385 6.385 5 C -0.008 4.008 6 H 0.101 0.899 7 C -0.104 4.104 8 C -0.066 4.066 9 C -0.138 4.138 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.136 4.136 13 C -0.064 4.064 14 C -0.035 4.035 15 N -0.232 5.232 16 C 0.010 3.990 17 C -0.600 4.600 18 H 0.095 0.905 19 C -0.124 4.124 20 N -0.529 5.529 21 Si 0.700 3.300 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.186 1.186 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.498 2.082 -13.005 13.627 hybrid contribution -0.612 -0.104 1.134 1.293 sum 2.886 1.978 -11.871 12.376 Atomic orbital electron populations 1.23151 0.77262 1.03092 1.02088 1.86517 1.22682 1.33806 1.84109 1.23252 0.91456 0.81073 0.71409 1.90582 1.66942 1.36324 1.44694 1.21033 0.87316 0.96915 0.95534 0.89877 1.20504 0.92543 1.02277 0.95113 1.19417 0.94889 0.99206 0.93121 1.21013 0.94338 1.01142 0.97270 1.20968 0.94686 1.00962 0.98207 1.20994 0.99512 1.00629 0.93143 1.21046 0.93570 1.00794 0.98212 1.19904 0.93842 0.97308 0.95331 1.20969 0.87257 1.02706 0.92577 1.62779 1.03776 1.36172 1.20495 1.20551 0.95386 0.97482 0.85625 1.21653 1.31999 1.03107 1.03203 0.90539 1.24893 0.95703 0.95267 0.96573 1.69921 1.43846 1.26033 1.13106 0.86869 0.81500 0.83392 0.78237 1.20139 1.21090 1.18631 0.88603 0.91966 0.92514 0.89539 0.90092 0.86364 0.86514 0.86445 0.86046 0.89496 0.91016 0.94595 0.93724 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.65 16 2 O -0.36 -6.88 10.57 -39.25 -0.41 -7.29 16 3 C 0.49 10.15 5.72 36.01 0.21 10.35 16 4 O -0.50 -11.31 14.69 -18.74 -0.28 -11.59 16 5 C 0.10 2.02 1.88 -68.77 -0.13 1.89 16 6 H 0.08 1.76 6.92 -51.93 -0.36 1.40 16 7 C -0.07 -1.07 5.24 -27.93 -0.15 -1.21 16 8 C -0.07 -1.03 5.77 -104.60 -0.60 -1.64 16 9 C -0.12 -1.57 9.66 -39.49 -0.38 -1.95 16 10 C -0.13 -1.56 10.05 -39.65 -0.40 -1.96 16 11 C -0.12 -1.54 10.05 -39.65 -0.40 -1.94 16 12 C -0.12 -1.67 9.65 -39.48 -0.38 -2.05 16 13 C -0.06 -1.05 5.79 -104.63 -0.61 -1.65 16 14 C 0.09 1.75 5.06 -5.17 -0.03 1.73 16 15 N -0.51 -10.79 4.63 -231.04 -1.07 -11.86 16 16 C 0.14 3.33 3.65 -4.97 -0.02 3.31 16 17 C -0.56 -15.29 8.03 -34.44 -0.28 -15.57 16 18 H 0.08 2.23 6.12 -52.49 -0.32 1.91 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 20 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 21 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 33 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 35 H 0.07 1.50 6.57 -51.93 -0.34 1.16 16 36 H 0.04 0.89 7.19 -51.93 -0.37 0.52 16 37 H 0.04 1.17 5.07 -51.93 -0.26 0.91 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -31.73 309.84 -8.23 -39.96 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.05 Total: 1.86 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.19 Total: -6.88 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.30 Total: -37.69 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.69 Total: -18.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.73 -8.23 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263715745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.088 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds