Wall clock time and date at job start Mon Mar 30 2020 01:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99971 * 2 1 4 4 O 1.20819 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99891 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.79499 * 335.14479 * 5 3 2 7 7 C 1.52900 * 109.63281 * 95.63725 * 5 3 2 8 8 C 1.50716 * 109.94600 * 170.11848 * 7 5 3 9 9 C 1.38679 * 118.47744 * 163.20783 * 8 7 5 10 10 C 1.38037 * 120.34736 * 179.78703 * 9 8 7 11 11 C 1.38265 * 119.82341 * 359.97438 * 10 9 8 12 12 C 1.38016 * 119.87146 * 0.08227 * 11 10 9 13 13 C 1.37828 * 121.66491 * 343.13281 * 8 7 5 14 14 C 1.50617 * 121.85666 * 0.33055 * 13 8 7 15 15 N 1.46626 * 110.50031 * 342.59581 * 14 13 8 16 16 C 1.46905 * 110.99947 * 175.88335 * 15 14 13 17 17 C 1.50701 * 109.47424 * 296.07775 * 16 15 14 18 18 H 1.07997 * 119.99878 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00043 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00254 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00178 * 0.02562 * 19 17 16 22 22 H 1.48489 * 109.47235 * 89.99572 * 21 19 17 23 23 H 1.48498 * 109.47022 * 210.00055 * 21 19 17 24 24 H 1.48501 * 109.46724 * 329.99653 * 21 19 17 25 25 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47147 * 299.99533 * 1 2 3 27 27 H 1.09003 * 109.47318 * 60.00009 * 1 2 3 28 28 H 1.08997 * 109.38940 * 49.97308 * 7 5 3 29 29 H 1.08997 * 109.30893 * 290.21648 * 7 5 3 30 30 H 1.07993 * 119.83016 * 359.75992 * 9 8 7 31 31 H 1.07998 * 120.09254 * 179.97438 * 10 9 8 32 32 H 1.08006 * 120.06277 * 180.02562 * 11 10 9 33 33 H 1.08005 * 119.80824 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.26776 * 222.34033 * 14 13 8 35 35 H 1.09000 * 109.27614 * 102.86220 * 14 13 8 36 36 H 1.08998 * 109.46735 * 56.08200 * 16 15 14 37 37 H 1.09005 * 109.47058 * 176.07938 * 16 15 14 38 38 H 0.96997 * 120.00014 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9834 0.3649 0.4320 7 6 4.0725 1.4427 -1.4324 8 6 5.5451 1.7636 -1.4232 9 6 6.2634 1.6067 -2.5991 10 6 7.6131 1.8937 -2.6354 11 6 8.2521 2.3404 -1.4935 12 6 7.5383 2.4958 -0.3225 13 6 6.1821 2.2056 -0.2837 14 6 5.4473 2.3866 1.0185 15 7 4.0002 2.4397 0.7884 16 6 3.2676 2.5179 2.0594 17 6 3.5035 1.2591 2.8536 18 1 4.1349 0.4791 2.4544 19 6 2.9142 1.1036 4.0902 20 7 3.1197 0.0048 4.7832 21 14 1.8227 2.4530 4.7811 22 1 0.4186 2.2189 4.3584 23 1 1.9015 2.4429 6.2640 24 1 2.2804 3.7701 4.2701 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.5282 2.2540 -1.9157 29 1 3.9072 0.5171 -1.9838 30 1 5.7643 1.2578 -3.4909 31 1 8.1686 1.7697 -3.5532 32 1 9.3079 2.5665 -1.5177 33 1 8.0385 2.8444 0.5690 34 1 5.7711 3.3154 1.4882 35 1 5.6760 1.5509 1.6798 36 1 3.6191 3.3782 2.6289 37 1 2.2017 2.6262 1.8583 38 1 2.7054 -0.1044 5.6534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263715745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:44 Heat of formation + Delta-G solvation = -68.247943 kcal Electronic energy + Delta-G solvation = -21836.684804 eV Core-core repulsion = 18643.418488 eV Total energy + Delta-G solvation = -3193.266316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96284 -40.60958 -38.42855 -37.19538 -35.03718 -33.91322 -32.62929 -30.93843 -29.18749 -28.57361 -25.97446 -25.46190 -23.40964 -22.84661 -22.04056 -20.42185 -19.23251 -18.61275 -17.98877 -17.48500 -17.04160 -16.53670 -16.26416 -16.08398 -15.47415 -15.33841 -14.98074 -14.55494 -14.47441 -14.20203 -13.88679 -13.81859 -13.61143 -13.35216 -13.04517 -12.93666 -12.75998 -12.49136 -12.33493 -12.07948 -11.96484 -11.82293 -11.71491 -11.60869 -11.13781 -10.84293 -9.68734 -9.46425 -9.14191 -8.39060 -6.44225 0.50749 0.53939 1.14235 1.26921 1.28425 1.40033 1.74393 2.25330 2.89944 2.95789 3.04583 3.68301 3.73409 3.95155 4.08006 4.17582 4.19504 4.28106 4.31206 4.33224 4.46316 4.61237 4.64310 4.70935 4.74958 4.83082 4.86126 4.92665 4.98745 5.17301 5.23052 5.30739 5.38814 5.61761 5.66432 5.71602 5.92711 6.09318 6.15864 6.21704 6.59578 6.79323 7.22562 8.76075 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.006886 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.702380 B = 4065.177409 C = 5111.561711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.483 3.517 4 O -0.522 6.522 5 C 0.100 3.900 6 H 0.060 0.940 7 C -0.057 4.057 8 C -0.085 4.085 9 C -0.119 4.119 10 C -0.122 4.122 11 C -0.121 4.121 12 C -0.126 4.126 13 C -0.092 4.092 14 C 0.099 3.901 15 N -0.509 5.509 16 C 0.147 3.853 17 C -0.553 4.553 18 H 0.045 0.955 19 C 0.027 3.973 20 N -0.933 5.933 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.275 1.275 24 H -0.252 1.252 25 H 0.132 0.868 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 2.101 -15.180 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.327 3.673 4 O -0.410 6.410 5 C -0.010 4.010 6 H 0.078 0.922 7 C -0.095 4.095 8 C -0.086 4.086 9 C -0.137 4.137 10 C -0.140 4.140 11 C -0.139 4.139 12 C -0.145 4.145 13 C -0.093 4.093 14 C -0.028 4.028 15 N -0.234 5.234 16 C 0.020 3.980 17 C -0.591 4.591 18 H 0.063 0.937 19 C -0.173 4.173 20 N -0.572 5.572 21 Si 0.755 3.245 22 H -0.199 1.199 23 H -0.200 1.200 24 H -0.176 1.176 25 H 0.150 0.850 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.262 2.733 -15.285 16.102 hybrid contribution -0.782 -0.394 1.749 1.956 sum 3.480 2.339 -13.537 14.171 Atomic orbital electron populations 1.23513 0.75010 1.05604 1.02216 1.86502 1.25011 1.33043 1.83634 1.23473 0.91865 0.81197 0.70791 1.90555 1.67447 1.37009 1.45995 1.21150 0.86971 0.95189 0.97667 0.92242 1.20489 0.93064 1.03639 0.92263 1.19513 0.94713 1.00277 0.94053 1.21304 0.94970 1.00421 0.96999 1.21437 0.94346 0.98823 0.99365 1.21385 1.00937 0.99270 0.92309 1.21224 0.92711 1.00845 0.99699 1.19778 0.94939 1.00198 0.94369 1.20874 0.86156 1.01536 0.94273 1.62752 1.04876 1.37104 1.18633 1.20298 0.95070 0.95787 0.86862 1.21761 1.30726 1.03342 1.03315 0.93674 1.25675 0.97184 0.97408 0.97042 1.70034 1.45421 1.27995 1.13770 0.85950 0.79559 0.81011 0.78013 1.19911 1.19978 1.17564 0.84990 0.93712 0.90517 0.89427 0.87544 0.83688 0.82951 0.83360 0.85229 0.89263 0.94231 0.94794 0.95035 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.56 113.37 1.20 2.08 16 2 O -0.37 -14.27 10.57 -51.39 -0.54 -14.82 16 3 C 0.48 20.53 5.72 71.24 0.41 20.93 16 4 O -0.52 -23.91 14.69 21.98 0.32 -23.59 16 5 C 0.10 4.07 1.88 44.09 0.08 4.16 16 6 H 0.06 2.68 6.92 -2.39 -0.02 2.66 16 7 C -0.06 -1.79 5.24 29.82 0.16 -1.63 16 8 C -0.09 -2.56 5.77 -19.85 -0.11 -2.68 16 9 C -0.12 -2.73 9.66 22.33 0.22 -2.52 16 10 C -0.12 -2.41 10.05 22.23 0.22 -2.18 16 11 C -0.12 -2.57 10.05 22.22 0.22 -2.35 16 12 C -0.13 -3.41 9.65 22.34 0.22 -3.19 16 13 C -0.09 -3.04 5.79 -19.87 -0.12 -3.16 16 14 C 0.10 3.91 5.06 85.58 0.43 4.35 16 15 N -0.51 -22.35 4.63 -884.87 -4.10 -26.45 16 16 C 0.15 7.43 3.65 85.56 0.31 7.74 16 17 C -0.55 -31.41 8.03 25.60 0.21 -31.20 16 18 H 0.05 2.80 6.12 -2.91 -0.02 2.78 16 19 C 0.03 1.56 5.47 84.65 0.46 2.02 16 20 N -0.93 -57.29 13.96 21.45 0.30 -56.99 16 21 Si 0.93 45.14 27.47 68.60 1.88 47.02 16 22 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 25 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.04 1.49 8.13 -2.39 -0.02 1.47 16 27 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 28 H 0.09 2.70 8.11 -2.39 -0.02 2.68 16 29 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.09 3.34 8.13 -2.39 -0.02 3.32 16 35 H 0.04 1.79 6.57 -2.39 -0.02 1.77 16 36 H 0.03 1.71 7.19 -2.39 -0.02 1.69 16 37 H 0.03 1.69 5.07 -2.38 -0.01 1.68 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -70.79 309.84 2.77 -68.02 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.00 Total: 14.43 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 3.91 Total: -7.62 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.80 Total: -83.44 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.22 Total: -38.40 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -70.79 2.77 -68.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263715745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.230 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds