Wall clock time and date at job start Mon Mar 30 2020 01:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99395 * 2 1 4 4 O 1.20819 * 120.00602 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99585 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.63150 * 60.39681 * 5 3 2 7 7 C 1.52900 * 109.63376 * 300.00481 * 5 3 2 8 8 C 1.50713 * 109.95373 * 189.69401 * 7 5 3 9 9 C 1.38678 * 118.48086 * 196.74307 * 8 7 5 10 10 C 1.38035 * 120.34681 * 180.21758 * 9 8 7 11 11 C 1.38262 * 119.82562 * 0.04874 * 10 9 8 12 12 C 1.38009 * 119.87062 * 359.93562 * 11 10 9 13 13 C 1.37831 * 121.66756 * 16.90793 * 8 7 5 14 14 C 1.50625 * 121.84317 * 359.55785 * 13 8 7 15 15 N 1.46631 * 110.49872 * 17.51899 * 14 13 8 16 16 C 1.46896 * 110.99963 * 70.90557 * 15 14 13 17 17 C 1.50710 * 109.47190 * 67.00597 * 16 15 14 18 18 H 1.07995 * 119.99596 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99913 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99976 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99895 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46877 * 90.00408 * 21 19 17 23 23 H 1.48504 * 109.46967 * 210.00079 * 21 19 17 24 24 H 1.48497 * 109.47460 * 330.00122 * 21 19 17 25 25 H 1.09001 * 109.47378 * 299.99310 * 1 2 3 26 26 H 1.09000 * 109.47441 * 59.99867 * 1 2 3 27 27 H 1.09004 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.39298 * 69.54220 * 7 5 3 29 29 H 1.09001 * 109.30492 * 309.78680 * 7 5 3 30 30 H 1.08003 * 119.83021 * 0.19678 * 9 8 7 31 31 H 1.08008 * 120.08608 * 179.77576 * 10 9 8 32 32 H 1.08006 * 120.06143 * 179.91391 * 11 10 9 33 33 H 1.08003 * 119.81207 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.27107 * 257.25236 * 14 13 8 35 35 H 1.08998 * 109.23925 * 137.76829 * 14 13 8 36 36 H 1.08997 * 109.47185 * 187.00927 * 16 15 14 37 37 H 1.09002 * 109.47055 * 307.01489 * 16 15 14 38 38 H 0.96995 * 120.00275 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9581 0.7879 -0.8935 7 6 4.1175 0.5825 1.2462 8 6 5.5931 0.8591 1.3781 9 6 6.3441 0.0538 2.2211 10 6 7.6979 0.2756 2.3742 11 6 8.3081 1.3068 1.6843 12 6 7.5617 2.1085 0.8449 13 6 6.2014 1.8858 0.6885 14 6 5.4302 2.7837 -0.2432 15 7 3.9914 2.6836 0.0211 16 6 3.6458 3.3182 1.3001 17 6 3.8685 4.8054 1.1994 18 1 4.2302 5.2359 0.2774 19 6 3.6105 5.6161 2.2845 20 7 3.8044 6.9138 2.1965 21 14 2.9856 4.8710 3.8794 22 1 4.1390 4.5064 4.7407 23 1 2.1327 5.8597 4.5868 24 1 2.1883 3.6548 3.5787 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9567 -0.4925 1.1641 29 1 3.5984 0.9598 2.1272 30 1 5.8673 -0.7510 2.7609 31 1 8.2781 -0.3519 3.0347 32 1 9.3669 1.4846 1.8024 33 1 8.0392 2.9140 0.3068 34 1 5.6282 2.4880 -1.2736 35 1 5.7522 3.8147 -0.0967 36 1 2.5988 3.1224 1.5316 37 1 4.2754 2.9093 2.0904 38 1 3.6233 7.4841 2.9599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263715750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:48 Heat of formation + Delta-G solvation = -42.462117 kcal Electronic energy + Delta-G solvation = -21918.043126 eV Core-core repulsion = 18725.894968 eV Total energy + Delta-G solvation = -3192.148159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71372 -39.51233 -37.03788 -35.82278 -32.96238 -32.26060 -30.85118 -29.76530 -27.77688 -27.46545 -24.34516 -24.11322 -21.92484 -21.69068 -20.85299 -18.72767 -17.30725 -16.95444 -16.50427 -16.03564 -15.93363 -15.09274 -14.82512 -14.48407 -14.20852 -13.88298 -13.67532 -13.34706 -13.05271 -12.83492 -12.55075 -12.26193 -12.22600 -11.91887 -11.50032 -11.40737 -11.21727 -11.05198 -10.77585 -10.63221 -10.51705 -10.31626 -9.96937 -9.72715 -9.18516 -8.53078 -8.51969 -8.27243 -7.59752 -6.00677 -3.95934 1.58787 1.62583 2.58585 2.85855 3.31085 3.37989 3.41249 3.97870 4.46568 4.54933 4.81832 5.01739 5.13463 5.16990 5.20650 5.24959 5.25611 5.28540 5.31881 5.34238 5.60976 5.64015 5.77026 5.80139 5.95894 6.02212 6.21233 6.24599 6.41393 6.59845 6.66875 6.71732 6.84410 6.90941 6.94242 7.25035 7.57398 7.76518 7.89738 8.17814 8.66038 9.06171 9.61527 11.12624 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.010057 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.259440 B = 2783.347448 C = 4480.390896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.459 3.541 4 O -0.465 6.465 5 C 0.093 3.907 6 H 0.113 0.887 7 C -0.106 4.106 8 C -0.077 4.077 9 C -0.118 4.118 10 C -0.129 4.129 11 C -0.124 4.124 12 C -0.110 4.110 13 C -0.092 4.092 14 C 0.095 3.905 15 N -0.497 5.497 16 C 0.154 3.846 17 C -0.500 4.500 18 H 0.081 0.919 19 C 0.071 3.929 20 N -0.901 5.901 21 Si 0.869 3.131 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.269 1.269 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.040 0.960 37 H -0.009 1.009 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -16.985 -2.565 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.298 3.702 4 O -0.348 6.348 5 C -0.018 4.018 6 H 0.131 0.869 7 C -0.144 4.144 8 C -0.077 4.077 9 C -0.136 4.136 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.129 4.129 13 C -0.094 4.094 14 C -0.032 4.032 15 N -0.219 5.219 16 C 0.028 3.972 17 C -0.538 4.538 18 H 0.099 0.901 19 C -0.130 4.130 20 N -0.540 5.540 21 Si 0.697 3.303 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.194 1.194 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.009 0.991 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.351 -16.212 -2.847 16.627 hybrid contribution -0.130 -0.630 1.750 1.864 sum 2.222 -16.842 -1.097 17.023 Atomic orbital electron populations 1.23181 0.76972 1.03053 1.02573 1.86478 1.22924 1.34097 1.85015 1.23602 0.91724 0.81308 0.73535 1.90740 1.66292 1.35781 1.41981 1.21253 0.87390 0.93444 0.99714 0.86880 1.21004 0.92842 1.01443 0.99151 1.19387 0.94655 0.95824 0.97836 1.20976 0.94136 0.99704 0.98832 1.20968 0.94765 0.98654 1.00361 1.21041 0.99621 0.95960 0.97553 1.21088 0.93464 0.99368 0.98965 1.20593 0.94747 0.95712 0.98344 1.21227 0.85604 1.00278 0.96125 1.62398 1.13578 1.08449 1.37450 1.20401 0.96376 0.95977 0.84442 1.20917 1.43866 0.88879 1.00177 0.90089 1.24808 0.95235 0.94682 0.98294 1.69876 1.49672 1.03424 1.31030 0.86939 0.79358 0.79504 0.84498 1.20342 1.21078 1.19355 0.92108 0.92008 0.88526 0.89522 0.89924 0.86490 0.86527 0.86417 0.85867 0.90315 0.87025 0.94173 0.99091 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.45 10.50 -39.26 -0.41 -5.86 16 3 C 0.46 8.33 6.87 36.01 0.25 8.58 16 4 O -0.47 -10.34 14.37 -18.74 -0.27 -10.61 16 5 C 0.09 1.59 2.70 -68.77 -0.19 1.41 16 6 H 0.11 1.64 8.05 -51.93 -0.42 1.23 16 7 C -0.11 -1.67 4.41 -27.93 -0.12 -1.79 16 8 C -0.08 -1.25 5.05 -104.60 -0.53 -1.78 16 9 C -0.12 -1.69 9.66 -39.49 -0.38 -2.07 16 10 C -0.13 -1.71 10.05 -39.65 -0.40 -2.11 16 11 C -0.12 -1.68 10.05 -39.66 -0.40 -2.08 16 12 C -0.11 -1.68 9.65 -39.48 -0.38 -2.07 16 13 C -0.09 -1.57 5.19 -104.63 -0.54 -2.12 16 14 C 0.10 1.75 5.42 -5.16 -0.03 1.72 16 15 N -0.50 -10.43 4.47 -231.04 -1.03 -11.46 16 16 C 0.15 3.83 2.41 -4.97 -0.01 3.81 16 17 C -0.50 -14.50 8.92 -34.43 -0.31 -14.80 16 18 H 0.08 2.51 7.49 -52.49 -0.39 2.12 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 21 Si 0.87 22.49 27.47 -169.99 -4.67 17.83 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.27 -6.82 6.54 56.52 0.37 -6.45 16 25 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 30 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 33 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 2.29 6.68 -51.93 -0.35 1.95 16 36 H 0.04 1.08 5.06 -51.93 -0.26 0.81 16 37 H -0.01 -0.21 5.34 -51.93 -0.28 -0.49 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 308.78 15.07 4.65 4.65 Total: -1.00 -34.01 308.78 -8.06 -42.07 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.03 Total: 0.51 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.07 Total: -9.79 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.26 Total: -38.80 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.68 Total: -16.47 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.01 -8.06 -42.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263715750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.388 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds