Wall clock time and date at job start Mon Mar 30 2020 01:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99395 * 2 1 4 4 O 1.20819 * 120.00602 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99585 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.63150 * 60.39681 * 5 3 2 7 7 C 1.52900 * 109.63376 * 300.00481 * 5 3 2 8 8 C 1.50713 * 109.95373 * 189.69401 * 7 5 3 9 9 C 1.38678 * 118.48086 * 196.74307 * 8 7 5 10 10 C 1.38035 * 120.34681 * 180.21758 * 9 8 7 11 11 C 1.38262 * 119.82562 * 0.04874 * 10 9 8 12 12 C 1.38009 * 119.87062 * 359.93562 * 11 10 9 13 13 C 1.37831 * 121.66756 * 16.90793 * 8 7 5 14 14 C 1.50625 * 121.84317 * 359.55785 * 13 8 7 15 15 N 1.46631 * 110.49872 * 17.51899 * 14 13 8 16 16 C 1.46896 * 110.99963 * 70.90557 * 15 14 13 17 17 C 1.50710 * 109.47190 * 67.00597 * 16 15 14 18 18 H 1.07995 * 119.99596 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99913 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99976 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99895 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.46877 * 90.00408 * 21 19 17 23 23 H 1.48504 * 109.46967 * 210.00079 * 21 19 17 24 24 H 1.48497 * 109.47460 * 330.00122 * 21 19 17 25 25 H 1.09001 * 109.47378 * 299.99310 * 1 2 3 26 26 H 1.09000 * 109.47441 * 59.99867 * 1 2 3 27 27 H 1.09004 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.39298 * 69.54220 * 7 5 3 29 29 H 1.09001 * 109.30492 * 309.78680 * 7 5 3 30 30 H 1.08003 * 119.83021 * 0.19678 * 9 8 7 31 31 H 1.08008 * 120.08608 * 179.77576 * 10 9 8 32 32 H 1.08006 * 120.06143 * 179.91391 * 11 10 9 33 33 H 1.08003 * 119.81207 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.27107 * 257.25236 * 14 13 8 35 35 H 1.08998 * 109.23925 * 137.76829 * 14 13 8 36 36 H 1.08997 * 109.47185 * 187.00927 * 16 15 14 37 37 H 1.09002 * 109.47055 * 307.01489 * 16 15 14 38 38 H 0.96995 * 120.00275 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9581 0.7879 -0.8935 7 6 4.1175 0.5825 1.2462 8 6 5.5931 0.8591 1.3781 9 6 6.3441 0.0538 2.2211 10 6 7.6979 0.2756 2.3742 11 6 8.3081 1.3068 1.6843 12 6 7.5617 2.1085 0.8449 13 6 6.2014 1.8858 0.6885 14 6 5.4302 2.7837 -0.2432 15 7 3.9914 2.6836 0.0211 16 6 3.6458 3.3182 1.3001 17 6 3.8685 4.8054 1.1994 18 1 4.2302 5.2359 0.2774 19 6 3.6105 5.6161 2.2845 20 7 3.8044 6.9138 2.1965 21 14 2.9856 4.8710 3.8794 22 1 4.1390 4.5064 4.7407 23 1 2.1327 5.8597 4.5868 24 1 2.1883 3.6548 3.5787 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.9567 -0.4925 1.1641 29 1 3.5984 0.9598 2.1272 30 1 5.8673 -0.7510 2.7609 31 1 8.2781 -0.3519 3.0347 32 1 9.3669 1.4846 1.8024 33 1 8.0392 2.9140 0.3068 34 1 5.6282 2.4880 -1.2736 35 1 5.7522 3.8147 -0.0967 36 1 2.5988 3.1224 1.5316 37 1 4.2754 2.9093 2.0904 38 1 3.6233 7.4841 2.9599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263715750.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:47 Heat of formation + Delta-G solvation = -65.150120 kcal Electronic energy + Delta-G solvation = -21919.026952 eV Core-core repulsion = 18725.894968 eV Total energy + Delta-G solvation = -3193.131984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08060 -40.77419 -38.34569 -37.22611 -34.93318 -33.76346 -32.20970 -31.13084 -29.54203 -28.52324 -25.83903 -25.52268 -23.43355 -23.07065 -22.11614 -20.16633 -19.10201 -18.60115 -17.84312 -17.35224 -17.17262 -16.48596 -16.29068 -15.90394 -15.79646 -15.32696 -15.18036 -14.62567 -14.52187 -14.27049 -13.94205 -13.71229 -13.65018 -13.14643 -13.09234 -12.94987 -12.61934 -12.48055 -12.21572 -12.08460 -11.92966 -11.88577 -11.74379 -11.62756 -11.11149 -10.79621 -9.62949 -9.44887 -9.19823 -8.31089 -6.30858 0.46439 0.51265 1.18473 1.24120 1.27133 1.36877 1.62142 2.29019 2.86094 3.01097 3.08284 3.61967 3.77001 3.88410 3.97948 4.07959 4.16794 4.27966 4.33207 4.34840 4.43611 4.55818 4.64620 4.67488 4.70227 4.78114 4.88294 4.89333 5.07172 5.16235 5.20619 5.31622 5.55061 5.57393 5.64673 5.69362 5.86922 6.16196 6.21394 6.48839 6.71601 6.83207 7.30189 8.85740 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.010057 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.259440 B = 2783.347448 C = 4480.390896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.516 6.516 5 C 0.090 3.910 6 H 0.144 0.856 7 C -0.097 4.097 8 C -0.095 4.095 9 C -0.121 4.121 10 C -0.126 4.126 11 C -0.124 4.124 12 C -0.126 4.126 13 C -0.117 4.117 14 C 0.101 3.899 15 N -0.520 5.520 16 C 0.178 3.822 17 C -0.505 4.505 18 H 0.042 0.958 19 C 0.013 3.987 20 N -0.945 5.945 21 Si 0.934 3.066 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.262 1.262 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.023 0.977 37 H -0.009 1.009 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -20.553 -1.314 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.306 3.694 4 O -0.403 6.403 5 C -0.020 4.020 6 H 0.162 0.838 7 C -0.136 4.136 8 C -0.095 4.095 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.142 4.142 12 C -0.145 4.145 13 C -0.119 4.119 14 C -0.027 4.027 15 N -0.242 5.242 16 C 0.051 3.949 17 C -0.544 4.544 18 H 0.060 0.940 19 C -0.185 4.185 20 N -0.586 5.586 21 Si 0.758 3.242 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.187 1.187 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.159 0.841 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.145 0.855 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.009 0.991 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.013 -19.825 -1.610 20.117 hybrid contribution -0.297 0.429 1.248 1.352 sum 2.716 -19.396 -0.362 19.588 Atomic orbital electron populations 1.23545 0.75002 1.05828 1.02131 1.86464 1.24738 1.31942 1.84096 1.23820 0.92096 0.81456 0.72077 1.90724 1.67360 1.37605 1.44648 1.21417 0.87121 0.91382 1.02080 0.83848 1.20956 0.92424 1.03178 0.97009 1.19536 0.94925 0.96329 0.98702 1.21307 0.94626 0.99795 0.98118 1.21413 0.94707 0.98347 0.99858 1.21404 1.00924 0.95390 0.96469 1.21274 0.93166 1.00169 0.99868 1.20512 0.95491 0.96466 0.99441 1.21082 0.84485 0.98948 0.98170 1.62183 1.15403 1.11379 1.35247 1.19914 0.95049 0.93400 0.86500 1.21195 1.42976 0.91505 0.98712 0.93969 1.25672 0.95613 0.95060 1.02116 1.70018 1.51266 1.04934 1.32367 0.85904 0.79284 0.78901 0.80081 1.18820 1.20261 1.18693 0.92965 0.92192 0.84058 0.85977 0.92060 0.83874 0.83197 0.83732 0.85506 0.87961 0.90656 0.95951 0.99092 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -9.79 10.50 -51.44 -0.54 -10.33 16 3 C 0.46 16.52 6.87 71.24 0.49 17.01 16 4 O -0.52 -23.37 14.37 21.99 0.32 -23.06 16 5 C 0.09 3.00 2.70 44.09 0.12 3.12 16 6 H 0.14 3.87 8.05 -2.39 -0.02 3.85 16 7 C -0.10 -2.87 4.41 29.82 0.13 -2.73 16 8 C -0.09 -2.88 5.05 -19.85 -0.10 -2.98 16 9 C -0.12 -2.99 9.66 22.33 0.22 -2.78 16 10 C -0.13 -2.81 10.05 22.23 0.22 -2.59 16 11 C -0.12 -3.01 10.05 22.22 0.22 -2.79 16 12 C -0.13 -3.73 9.65 22.33 0.22 -3.52 16 13 C -0.12 -3.93 5.19 -19.87 -0.10 -4.03 16 14 C 0.10 3.79 5.42 85.58 0.46 4.25 16 15 N -0.52 -22.27 4.47 -884.86 -3.95 -26.22 16 16 C 0.18 9.09 2.41 85.56 0.21 9.29 16 17 C -0.51 -30.70 8.92 25.60 0.23 -30.47 16 18 H 0.04 2.81 7.49 -2.91 -0.02 2.79 16 19 C 0.01 0.77 5.47 84.66 0.46 1.24 16 20 N -0.94 -61.10 13.96 21.45 0.30 -60.80 16 21 Si 0.93 47.09 27.47 68.60 1.88 48.97 16 22 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.26 -12.87 6.54 99.48 0.65 -12.22 16 25 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 26 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 27 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.12 2.66 8.14 -2.39 -0.02 2.65 16 29 H 0.06 2.07 7.02 -2.39 -0.02 2.05 16 30 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 35 H 0.08 3.33 6.68 -2.39 -0.02 3.31 16 36 H 0.02 1.23 5.06 -2.39 -0.01 1.22 16 37 H -0.01 -0.43 5.34 -2.39 -0.01 -0.44 16 38 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -77.26 308.78 2.98 -74.28 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.00 Total: 12.34 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 3.97 Total: -15.19 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -3.65 Total: -87.02 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.22 Total: -33.38 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.88 Total: 48.97 kcal Total: -77.26 2.98 -74.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263715750.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.131 kcal (2) G-P(sol) polarization free energy of solvation -77.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds