Wall clock time and date at job start Mon Mar 30 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00267 * 2 1 4 4 H 1.48497 * 109.47447 * 272.02361 * 3 2 1 5 5 H 1.48507 * 109.46925 * 32.02270 * 3 2 1 6 6 H 1.48499 * 109.47416 * 152.01905 * 3 2 1 7 7 C 1.38814 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00038 * 336.83030 * 7 2 1 9 9 N 1.36936 * 119.99640 * 156.81736 * 7 2 1 10 10 C 1.46497 * 120.00308 * 320.89261 * 9 7 2 11 11 C 1.50698 * 109.47182 * 269.99854 * 10 9 7 12 12 O 1.21278 * 120.00290 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99779 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99643 * 179.72506 * 13 11 10 15 15 C 1.50704 * 109.46729 * 180.27269 * 14 13 11 16 16 C 1.38665 * 120.42011 * 269.72114 * 15 14 13 17 17 C 1.38636 * 118.41862 * 179.78475 * 16 15 14 18 18 C 1.38225 * 119.15827 * 0.51616 * 17 16 15 19 19 N 1.31849 * 120.76566 * 359.72431 * 18 17 16 20 20 C 1.31887 * 121.72533 * 359.97438 * 19 18 17 21 21 C 1.46506 * 119.99606 * 140.89455 * 9 7 2 22 22 C 1.53002 * 117.49943 * 4.01807 * 21 9 7 23 23 C 1.53000 * 117.49591 * 295.39505 * 21 9 7 24 24 H 0.97001 * 119.99751 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46879 * 150.00395 * 10 9 7 26 26 H 1.08997 * 109.47199 * 30.00162 * 10 9 7 27 27 H 0.96994 * 119.99897 * 0.02562 * 13 11 10 28 28 H 1.09000 * 109.47264 * 300.27363 * 14 13 11 29 29 H 1.09003 * 109.47342 * 60.27943 * 14 13 11 30 30 H 1.08002 * 120.79453 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.41583 * 180.22500 * 17 16 15 32 32 H 1.08009 * 119.61586 * 179.75124 * 18 17 16 33 33 H 1.08008 * 119.61296 * 179.97438 * 20 19 18 34 34 H 1.08999 * 115.54956 * 149.72751 * 21 9 7 35 35 H 1.09006 * 117.49712 * 359.97438 * 22 21 9 36 36 H 1.08995 * 117.49794 * 145.02426 * 22 21 9 37 37 H 1.09000 * 117.49530 * 214.98116 * 23 21 9 38 38 H 1.08992 * 117.49900 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3991 5 1 1.4697 2.6399 0.7424 6 1 3.5685 1.4282 0.6569 7 6 2.0102 -1.2022 0.0005 8 1 1.5355 -2.0996 0.3689 9 7 3.2966 -1.2502 -0.4663 10 6 3.6775 -0.4693 -1.6458 11 6 3.4637 -1.2970 -2.8868 12 8 3.0348 -2.4277 -2.7952 13 7 3.7490 -0.7806 -4.0987 14 6 3.5468 -1.5874 -5.3047 15 6 3.9444 -0.7861 -6.5175 16 6 3.0110 -0.0009 -7.1771 17 6 3.4228 0.7227 -8.2856 18 6 4.7382 0.6296 -8.6999 19 7 5.5975 -0.1313 -8.0510 20 6 5.2424 -0.8287 -6.9894 21 6 4.2920 -2.0827 0.2138 22 6 3.8114 -2.9467 1.3815 23 6 4.6662 -1.7062 1.6488 24 1 -0.4850 0.8401 -0.0004 25 1 4.7285 -0.1895 -1.5724 26 1 3.0648 0.4306 -1.6991 27 1 4.0924 0.1236 -4.1719 28 1 4.1593 -2.4872 -5.2469 29 1 2.4962 -1.8674 -5.3826 30 1 1.9884 0.0489 -6.8332 31 1 2.7236 1.3474 -8.8215 32 1 5.0661 1.1869 -9.5651 33 1 5.9743 -1.4413 -6.4839 34 1 5.0794 -2.4879 -0.4218 35 1 2.7546 -2.8954 1.6440 36 1 4.2825 -3.9206 1.5142 37 1 5.6996 -1.8640 1.9573 38 1 4.1721 -0.8389 2.0866 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264722568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:18 Heat of formation + Delta-G solvation = 36.184101 kcal Electronic energy + Delta-G solvation = -20725.317653 eV Core-core repulsion = 17568.872601 eV Total energy + Delta-G solvation = -3156.445052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29596 -40.43819 -38.60075 -36.16378 -35.22735 -33.52753 -33.23211 -32.42204 -29.12844 -27.03576 -25.69601 -24.53829 -23.12878 -22.93264 -21.77374 -21.38491 -19.00723 -18.07670 -17.92395 -17.49559 -17.31677 -17.08970 -16.55179 -15.92775 -15.74271 -15.39728 -14.89528 -14.67181 -14.45919 -14.15067 -14.11276 -13.99817 -13.89408 -13.45896 -12.95819 -12.66017 -12.52726 -12.16843 -11.92837 -11.86118 -11.51898 -11.04570 -10.97965 -10.71274 -10.59763 -10.46773 -10.04529 -10.02440 -8.66166 -8.21534 -5.62462 0.02893 0.27936 1.24967 1.42208 1.54118 1.83530 2.27077 2.39313 2.86735 3.01800 3.18583 3.35353 3.43880 3.71111 3.86748 4.00669 4.05760 4.13773 4.26288 4.33155 4.38206 4.44605 4.48751 4.58870 4.66108 4.73556 4.84592 4.93703 4.99522 5.14781 5.28843 5.30145 5.49017 5.54190 5.71869 5.90630 6.20835 6.59619 6.93297 6.97097 7.41273 7.59085 7.96846 8.98150 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.004615 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.141916 B = 6065.290922 C = 6690.856089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.022 4.022 3 Si 0.938 3.062 4 H -0.256 1.256 5 H -0.307 1.307 6 H -0.248 1.248 7 C -0.253 4.253 8 H 0.030 0.970 9 N -0.563 5.563 10 C 0.112 3.888 11 C 0.488 3.512 12 O -0.567 6.567 13 N -0.724 5.724 14 C 0.170 3.830 15 C -0.157 4.157 16 C -0.067 4.067 17 C -0.167 4.167 18 C 0.096 3.904 19 N -0.510 5.510 20 C 0.110 3.890 21 C 0.105 3.895 22 C -0.193 4.193 23 C -0.196 4.196 24 H 0.264 0.736 25 H 0.117 0.883 26 H 0.076 0.924 27 H 0.409 0.591 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.165 0.835 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.505 4.199 -15.144 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.218 4.218 3 Si 0.764 3.236 4 H -0.182 1.182 5 H -0.235 1.235 6 H -0.171 1.171 7 C -0.383 4.383 8 H 0.048 0.952 9 N -0.280 5.280 10 C -0.017 4.017 11 C 0.274 3.726 12 O -0.444 6.444 13 N -0.379 5.379 14 C 0.046 3.954 15 C -0.159 4.159 16 C -0.093 4.093 17 C -0.187 4.187 18 C -0.061 4.061 19 N -0.219 5.219 20 C -0.047 4.047 21 C -0.002 4.002 22 C -0.231 4.231 23 C -0.236 4.236 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.093 0.907 27 H 0.245 0.755 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.159 0.841 31 H 0.182 0.818 32 H 0.200 0.800 33 H 0.182 0.818 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.902 3.405 -15.352 20.341 hybrid contribution -1.407 0.878 0.534 1.742 sum 11.495 4.284 -14.818 19.237 Atomic orbital electron populations 1.70047 1.08059 1.27675 1.53180 1.26186 0.95698 1.01577 0.98333 0.85970 0.79765 0.79201 0.78673 1.18192 1.23492 1.17111 1.18448 0.88248 0.92972 1.38636 0.95213 1.43270 1.06757 1.52390 1.25618 1.21530 1.02171 0.93901 0.84129 1.22640 0.76025 0.88069 0.85903 1.90624 1.45167 1.21422 1.87185 1.46175 1.68184 1.18642 1.04900 1.19970 1.01067 0.93246 0.81157 1.20772 0.95905 1.00921 0.98322 1.21844 1.00255 0.93018 0.94181 1.22480 0.98217 1.00588 0.97396 1.23361 0.89887 0.94260 0.98574 1.67784 1.38476 1.07629 1.08004 1.22887 0.94105 0.95591 0.92123 1.21378 0.93997 0.97363 0.87491 1.23015 0.99594 0.95609 1.04913 1.23359 1.00011 0.97938 1.02309 0.92682 0.86558 0.90689 0.75526 0.90694 0.92278 0.84061 0.81763 0.79973 0.81765 0.86631 0.91650 0.87399 0.86538 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.41 13.97 21.65 0.30 -59.11 16 2 C -0.02 -1.24 5.28 84.86 0.45 -0.79 16 3 Si 0.94 43.06 25.32 68.60 1.74 44.80 16 4 H -0.26 -10.43 6.52 99.48 0.65 -9.79 16 5 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.25 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.25 -14.65 8.93 84.03 0.75 -13.90 16 8 H 0.03 2.00 6.85 -2.91 -0.02 1.98 16 9 N -0.56 -26.69 1.87 -682.33 -1.27 -27.96 16 10 C 0.11 4.43 5.04 85.63 0.43 4.87 16 11 C 0.49 19.21 7.90 87.66 0.69 19.91 16 12 O -0.57 -27.88 16.43 -3.02 -0.05 -27.93 16 13 N -0.72 -20.78 5.55 -466.77 -2.59 -23.37 16 14 C 0.17 4.35 5.83 85.63 0.50 4.85 16 15 C -0.16 -3.20 5.27 -19.78 -0.10 -3.31 16 16 C -0.07 -1.20 9.86 22.47 0.22 -0.98 16 17 C -0.17 -2.37 10.11 22.36 0.23 -2.14 16 18 C 0.10 1.48 11.18 84.69 0.95 2.43 16 19 N -0.51 -10.45 10.36 -195.84 -2.03 -12.47 16 20 C 0.11 2.19 10.86 84.67 0.92 3.11 16 21 C 0.10 4.22 6.57 44.99 0.30 4.51 16 22 C -0.19 -7.63 9.80 30.60 0.30 -7.33 16 23 C -0.20 -7.03 10.35 30.60 0.32 -6.71 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.12 3.56 8.07 -2.38 -0.02 3.54 16 26 H 0.08 3.13 3.45 -2.39 -0.01 3.12 16 27 H 0.41 9.41 8.46 -92.71 -0.78 8.63 16 28 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 29 H 0.06 1.71 8.09 -2.39 -0.02 1.69 16 30 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 34 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 35 H 0.06 3.09 6.44 -2.38 -0.02 3.08 16 36 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -76.99 323.78 2.27 -74.72 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.23 Total: 26.82 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.94 Total: 4.50 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -5.59 Total: -122.92 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.74 Total: 44.80 kcal Total: -76.99 2.27 -74.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264722568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.904 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds