Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.50693 * 109.47115 * 179.97438 * 15 13 12 17 17 C 1.38675 * 120.41906 * 90.00400 * 16 15 13 18 18 C 1.38629 * 118.42005 * 180.02562 * 17 16 15 19 19 C 1.38218 * 119.16257 * 359.97438 * 18 17 16 20 20 N 1.31852 * 120.76499 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72543 * 359.71037 * 20 19 18 22 22 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 23 23 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 24 24 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 26 26 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 27 27 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 28 28 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 29 29 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 30 30 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 31 31 H 1.08004 * 120.78869 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.41844 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.62094 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.61700 * 180.30816 * 21 20 19 35 35 H 1.08996 * 109.61476 * 295.47839 * 22 12 11 36 36 H 1.09010 * 109.61052 * 174.96625 * 22 12 11 37 37 H 1.09003 * 109.61422 * 354.94072 * 23 9 7 38 38 H 1.08999 * 109.61487 * 115.28316 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0583 -8.1473 2.2133 17 6 -1.2113 -8.5292 1.5441 18 6 -1.9747 -9.5558 2.0780 19 6 -1.5640 -10.1607 3.2510 20 7 -0.4609 -9.7720 3.8599 21 6 0.2929 -8.8032 3.3777 22 6 0.5344 -3.2876 2.4474 23 6 0.2343 -2.3368 1.2819 24 1 -0.4850 0.8401 -0.0004 25 1 1.0134 -4.0707 -0.8208 26 1 2.7052 -3.5085 -0.8012 27 1 3.0125 -4.2759 1.4845 28 1 2.2517 -5.6159 0.5906 29 1 0.7252 -7.0092 0.5866 30 1 1.8423 -7.2118 1.9575 31 1 -1.5079 -8.0379 0.6291 32 1 -2.8785 -9.8795 1.5832 33 1 -2.1533 -10.9609 3.6737 34 1 1.1923 -8.5155 3.9019 35 1 1.3246 -2.8665 3.0689 36 1 -0.3666 -3.4306 3.0440 37 1 0.0946 -1.3248 1.6621 38 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265755212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = 30.496350 kcal Electronic energy + Delta-G solvation = -20985.885651 eV Core-core repulsion = 17829.193960 eV Total energy + Delta-G solvation = -3156.691691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44392 -39.33860 -36.83886 -33.96256 -33.58680 -31.98500 -31.22381 -30.46914 -28.14993 -26.65270 -23.77253 -23.61927 -23.07948 -22.22316 -20.46854 -18.62933 -17.24593 -17.14491 -16.51819 -16.17335 -15.70713 -14.96703 -14.79215 -14.77048 -13.90142 -13.71501 -13.60700 -13.38652 -13.30437 -13.11074 -12.95313 -12.78116 -12.01639 -11.82611 -11.55382 -11.24180 -10.84460 -10.78208 -10.62712 -10.29534 -10.01280 -9.90712 -9.88826 -9.53998 -9.48403 -8.95666 -8.62699 -8.28477 -6.75982 -5.88705 -3.34571 1.04126 1.24458 2.92076 3.32581 3.35945 3.39353 3.40693 3.81890 4.34664 4.40885 4.61975 4.72422 4.85807 4.92468 4.94328 5.20093 5.25099 5.28817 5.37435 5.57456 5.66713 5.70212 5.72300 5.83143 6.03619 6.09606 6.19489 6.29333 6.33960 6.45241 6.62608 6.64499 6.81684 7.21223 7.50435 7.68251 7.85746 7.90850 8.32235 8.51326 9.07823 9.70578 10.27077 11.18655 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.048144 B = 0.003625 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.451029 B = 7722.395582 C = 7819.088099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.087 3.913 12 N -0.596 5.596 13 C 0.510 3.490 14 O -0.549 6.549 15 C -0.099 4.099 16 C -0.109 4.109 17 C -0.062 4.062 18 C -0.172 4.172 19 C 0.091 3.909 20 N -0.486 5.486 21 C 0.111 3.889 22 C 0.087 3.913 23 C 0.159 3.841 24 H 0.256 0.744 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 -16.342 1.939 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.038 4.038 12 N -0.329 5.329 13 C 0.297 3.703 14 O -0.428 6.428 15 C -0.139 4.139 16 C -0.111 4.111 17 C -0.088 4.088 18 C -0.191 4.191 19 C -0.066 4.066 20 N -0.194 5.194 21 C -0.046 4.046 22 C -0.036 4.036 23 C 0.032 3.968 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.850 -16.552 3.106 16.862 hybrid contribution 0.142 1.418 -0.951 1.714 sum 0.991 -15.134 2.155 15.318 Atomic orbital electron populations 1.70014 1.05346 1.25935 1.53123 1.25097 0.95297 0.98625 1.00429 0.86330 0.78904 0.83084 0.78185 1.20815 1.21573 1.20895 1.19149 0.92720 0.84678 1.42432 0.91474 1.44006 1.36548 1.01607 1.49220 1.21363 0.98435 0.87465 0.92439 1.22498 0.88480 1.00321 0.92476 1.48081 1.32576 1.06896 1.45338 1.20344 0.83072 0.85103 0.81789 1.90682 1.28779 1.86839 1.36495 1.20642 1.00140 0.90850 1.02294 1.20364 0.96719 0.97150 0.96882 1.21473 0.92932 0.94975 0.99435 1.22093 1.01098 0.97889 0.98061 1.22710 0.93141 0.98424 0.92352 1.67665 1.05658 1.13700 1.32399 1.22574 0.98452 0.91370 0.92222 1.22509 0.99837 0.82784 0.98469 1.21187 0.88980 0.98623 0.87991 0.93354 0.95899 0.91426 0.91430 0.90887 0.87770 0.87829 0.84944 0.84868 0.82990 0.83101 0.92149 0.90177 0.88264 0.95914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.20 55.49 0.62 -24.82 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 3 Si 0.91 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.80 9.57 -15.06 -0.14 -6.94 16 8 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -14.06 2.96 -171.77 -0.51 -14.57 16 10 C 0.13 2.46 6.70 -3.37 -0.02 2.43 16 11 C 0.09 1.31 6.52 -3.37 -0.02 1.29 16 12 N -0.60 -10.34 2.95 -172.21 -0.51 -10.84 16 13 C 0.51 8.44 7.69 -10.98 -0.08 8.35 16 14 O -0.55 -11.15 15.44 5.56 0.09 -11.06 16 15 C -0.10 -1.16 4.20 -29.04 -0.12 -1.28 16 16 C -0.11 -1.37 4.39 -104.48 -0.46 -1.83 16 17 C -0.06 -0.73 9.86 -39.28 -0.39 -1.12 16 18 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16 19 C 0.09 1.01 11.18 -17.55 -0.20 0.82 16 20 N -0.49 -6.52 10.36 -13.25 -0.14 -6.65 16 21 C 0.11 1.43 10.86 -17.55 -0.19 1.24 16 22 C 0.09 1.73 6.59 -3.60 -0.02 1.71 16 23 C 0.16 3.72 5.51 -3.59 -0.02 3.70 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.81 5.91 -51.93 -0.31 0.51 16 29 H 0.10 1.04 7.68 -51.93 -0.40 0.64 16 30 H 0.10 0.95 7.86 -51.92 -0.41 0.54 16 31 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.62 6.99 -51.92 -0.36 1.25 16 37 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 315.29 15.07 4.75 4.75 Total: -1.00 -32.48 315.29 -8.01 -40.49 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.13 Total: 0.57 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.16 Total: 6.21 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.53 Total: -56.89 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.48 -8.01 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265755212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.985 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds