Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.50693 * 109.47115 * 179.97438 * 15 13 12 17 17 C 1.38675 * 120.41906 * 90.00400 * 16 15 13 18 18 C 1.38629 * 118.42005 * 180.02562 * 17 16 15 19 19 C 1.38218 * 119.16257 * 359.97438 * 18 17 16 20 20 N 1.31852 * 120.76499 * 359.97438 * 19 18 17 21 21 C 1.31889 * 121.72543 * 359.71037 * 20 19 18 22 22 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 23 23 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 24 24 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 26 26 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 27 27 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 28 28 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 29 29 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 30 30 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 31 31 H 1.08004 * 120.78869 * 359.97438 * 17 16 15 32 32 H 1.08003 * 120.41844 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.62094 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.61700 * 180.30816 * 21 20 19 35 35 H 1.08996 * 109.61476 * 295.47839 * 22 12 11 36 36 H 1.09010 * 109.61052 * 174.96625 * 22 12 11 37 37 H 1.09003 * 109.61422 * 354.94072 * 23 9 7 38 38 H 1.08999 * 109.61487 * 115.28316 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0583 -8.1473 2.2133 17 6 -1.2113 -8.5292 1.5441 18 6 -1.9747 -9.5558 2.0780 19 6 -1.5640 -10.1607 3.2510 20 7 -0.4609 -9.7720 3.8599 21 6 0.2929 -8.8032 3.3777 22 6 0.5344 -3.2876 2.4474 23 6 0.2343 -2.3368 1.2819 24 1 -0.4850 0.8401 -0.0004 25 1 1.0134 -4.0707 -0.8208 26 1 2.7052 -3.5085 -0.8012 27 1 3.0125 -4.2759 1.4845 28 1 2.2517 -5.6159 0.5906 29 1 0.7252 -7.0092 0.5866 30 1 1.8423 -7.2118 1.9575 31 1 -1.5079 -8.0379 0.6291 32 1 -2.8785 -9.8795 1.5832 33 1 -2.1533 -10.9609 3.6737 34 1 1.1923 -8.5155 3.9019 35 1 1.3246 -2.8665 3.0689 36 1 -0.3666 -3.4306 3.0440 37 1 0.0946 -1.3248 1.6621 38 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265755212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = 9.648382 kcal Electronic energy + Delta-G solvation = -20986.789687 eV Core-core repulsion = 17829.193960 eV Total energy + Delta-G solvation = -3157.595727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47933 -40.53987 -38.41438 -35.63354 -34.58201 -33.06789 -32.83739 -31.99420 -29.36028 -28.19483 -25.46891 -24.52933 -24.47983 -23.38321 -21.98330 -20.09320 -18.77160 -17.99089 -17.81455 -17.40396 -16.94621 -16.70689 -16.19660 -15.79604 -15.48366 -15.24542 -15.02700 -14.87284 -14.39092 -14.18279 -14.09985 -13.93042 -13.37273 -13.16589 -13.04084 -12.63028 -12.49226 -12.39718 -12.30230 -12.00832 -11.85330 -11.68097 -10.97421 -10.64005 -10.59707 -10.39662 -9.87759 -9.80547 -8.65686 -7.88589 -5.37395 0.17750 0.37876 1.48347 1.51180 1.57501 1.65628 2.08456 2.51381 2.90432 3.26460 3.51292 3.61183 3.69810 3.80133 3.93734 4.10261 4.13366 4.26143 4.32201 4.41341 4.49199 4.54164 4.58477 4.66768 4.77068 4.80737 4.87232 4.94902 5.07654 5.20598 5.27147 5.34067 5.46027 5.61020 5.68244 5.81054 6.35318 6.54735 7.04490 7.09386 7.20684 7.79753 8.32509 9.16319 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.048144 B = 0.003625 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.451029 B = 7722.395582 C = 7819.088099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.123 3.877 11 C 0.097 3.903 12 N -0.602 5.602 13 C 0.508 3.492 14 O -0.592 6.592 15 C -0.087 4.087 16 C -0.123 4.123 17 C -0.077 4.077 18 C -0.171 4.171 19 C 0.081 3.919 20 N -0.513 5.513 21 C 0.094 3.906 22 C 0.103 3.897 23 C 0.171 3.829 24 H 0.250 0.750 25 H 0.018 0.982 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.179 0.821 34 H 0.162 0.838 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.066 0.934 38 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -18.225 1.402 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.094 0.906 9 N -0.333 5.333 10 C -0.003 4.003 11 C -0.026 4.026 12 N -0.334 5.334 13 C 0.298 3.702 14 O -0.473 6.473 15 C -0.127 4.127 16 C -0.125 4.125 17 C -0.103 4.103 18 C -0.190 4.190 19 C -0.076 4.076 20 N -0.222 5.222 21 C -0.062 4.062 22 C -0.022 4.022 23 C 0.044 3.956 24 H 0.059 0.941 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.196 0.804 34 H 0.179 0.821 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 2.468 -18.479 2.551 18.817 hybrid contribution -0.400 1.911 -0.805 2.112 sum 2.068 -16.568 1.747 16.787 Atomic orbital electron populations 1.70179 1.06884 1.26035 1.55207 1.25859 0.95942 1.01781 1.01087 0.85321 0.77489 0.79043 0.78461 1.19842 1.22549 1.20309 1.19551 0.93241 0.85699 1.40869 0.90560 1.44266 1.36273 1.02985 1.49812 1.21616 0.98605 0.85919 0.94145 1.22540 0.87586 1.02086 0.90433 1.48161 1.33354 1.06089 1.45803 1.21216 0.81955 0.86218 0.80818 1.90666 1.30664 1.87539 1.38436 1.20679 1.01584 0.87142 1.03307 1.20492 0.97386 0.97548 0.97113 1.21809 0.92978 0.95444 1.00049 1.22439 1.01737 0.97123 0.97739 1.23233 0.92787 0.98938 0.92605 1.67673 1.06737 1.14452 1.33356 1.22840 0.99083 0.91640 0.92647 1.22048 0.99658 0.83792 0.96691 1.20851 0.88184 0.97667 0.88895 0.94119 0.96381 0.90080 0.90577 0.85727 0.85269 0.84462 0.83788 0.82050 0.80441 0.82079 0.91803 0.91166 0.91549 0.99068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.74 11.20 21.65 0.24 -54.50 16 2 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 3 Si 0.97 43.48 29.59 68.60 2.03 45.51 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.26 -13.71 9.57 84.03 0.80 -12.90 16 8 H 0.08 3.75 7.89 -2.91 -0.02 3.73 16 9 N -0.61 -28.94 2.96 -697.35 -2.06 -31.00 16 10 C 0.12 4.38 6.70 86.56 0.58 4.96 16 11 C 0.10 2.57 6.52 86.56 0.56 3.14 16 12 N -0.60 -19.75 2.95 -817.15 -2.41 -22.16 16 13 C 0.51 15.80 7.69 87.66 0.67 16.48 16 14 O -0.59 -23.72 15.44 -3.02 -0.05 -23.77 16 15 C -0.09 -1.73 4.20 29.10 0.12 -1.60 16 16 C -0.12 -2.81 4.39 -19.78 -0.09 -2.89 16 17 C -0.08 -1.64 9.86 22.47 0.22 -1.42 16 18 C -0.17 -3.20 10.11 22.36 0.23 -2.97 16 19 C 0.08 1.66 11.18 84.69 0.95 2.61 16 20 N -0.51 -13.10 10.36 -195.84 -2.03 -15.12 16 21 C 0.09 2.28 10.86 84.67 0.92 3.20 16 22 C 0.10 4.10 6.59 86.42 0.57 4.67 16 23 C 0.17 8.27 5.51 86.42 0.48 8.74 16 24 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 25 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 2.65 7.93 -2.39 -0.02 2.63 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.12 2.06 5.91 -2.39 -0.01 2.05 16 29 H 0.13 1.95 7.68 -2.39 -0.02 1.93 16 30 H 0.14 1.82 7.86 -2.38 -0.02 1.80 16 31 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.92 6.99 -2.38 -0.02 2.91 16 37 H 0.07 3.63 6.00 -2.39 -0.01 3.62 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: -1.00 -73.00 315.29 3.21 -69.79 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.05 Total: 11.61 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 6.44 Total: 19.65 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -6.26 Total: -122.78 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -73.00 3.21 -69.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265755212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.436 kcal (2) G-P(sol) polarization free energy of solvation -73.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds