Wall clock time and date at job start Mon Mar 30 2020 01:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47321 * 270.00394 * 3 2 1 5 5 H 1.48505 * 109.46620 * 30.00287 * 3 2 1 6 6 H 1.48495 * 109.46874 * 150.00059 * 3 2 1 7 7 C 1.38947 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00082 * 166.03117 * 7 2 1 9 9 N 1.37102 * 119.99966 * 346.02930 * 7 2 1 10 10 C 1.34781 * 119.99653 * 151.91869 * 9 7 2 11 11 O 1.21288 * 120.00195 * 4.65651 * 10 9 7 12 12 C 1.50702 * 119.99477 * 184.65591 * 10 9 7 13 13 H 1.08992 * 109.47048 * 319.94122 * 12 10 9 14 14 C 1.53104 * 109.46674 * 199.94606 * 12 10 9 15 15 C 1.53358 * 109.51339 * 169.70606 * 14 12 10 16 16 C 1.50845 * 108.37561 * 49.94668 * 15 14 12 17 17 C 1.39295 * 127.89995 * 163.42048 * 16 15 14 18 18 N 1.31066 * 108.08016 * 180.09727 * 17 16 15 19 19 N 1.40296 * 108.27035 * 0.02562 * 18 17 16 20 20 H 0.96999 * 126.09243 * 179.90459 * 19 18 17 21 21 C 1.34318 * 107.81700 * 0.17228 * 19 18 17 22 22 C 1.50828 * 128.03223 * 180.56875 * 21 19 18 23 23 C 1.46493 * 120.00210 * 331.92199 * 9 7 2 24 24 C 1.53003 * 117.49524 * 311.62223 * 23 9 7 25 25 C 1.52999 * 60.00068 * 252.50717 * 24 23 9 26 26 H 0.96997 * 120.00537 * 5.06588 * 1 2 3 27 27 H 1.09003 * 109.46217 * 49.69468 * 14 12 10 28 28 H 1.09003 * 109.46230 * 289.72009 * 14 12 10 29 29 H 1.08991 * 109.68651 * 290.22366 * 15 14 12 30 30 H 1.08994 * 109.68681 * 169.66178 * 15 14 12 31 31 H 1.08007 * 125.95837 * 0.06822 * 17 16 15 32 32 H 1.09000 * 109.82724 * 43.13524 * 22 21 19 33 33 H 1.09004 * 109.48287 * 282.61204 * 22 21 19 34 34 H 1.09003 * 115.55140 * 97.32546 * 23 9 7 35 35 H 1.08998 * 117.50138 * 0.02562 * 24 23 9 36 36 H 1.09005 * 117.50057 * 145.01991 * 24 23 9 37 37 H 1.08998 * 117.50247 * 252.51279 * 25 24 23 38 38 H 1.09001 * 117.51510 * 107.48052 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0648 -1.2170 -0.2263 9 7 1.3538 -2.3732 0.2856 10 6 1.7956 -3.5368 -0.2316 11 8 2.8201 -3.5619 -0.8803 12 6 1.0167 -4.8066 -0.0037 13 1 0.6430 -4.8248 1.0200 14 6 1.9295 -6.0137 -0.2354 15 6 1.2230 -7.2890 0.2406 16 6 -0.1598 -7.3194 -0.3613 17 6 -1.0231 -8.4074 -0.4674 18 7 -2.1208 -7.9998 -1.0564 19 7 -1.9846 -6.6332 -1.3432 20 1 -2.6450 -6.0723 -1.7791 21 6 -0.7744 -6.2414 -0.9118 22 6 -0.1647 -4.8635 -0.9805 23 6 0.1736 -2.3586 1.1533 24 6 0.2771 -1.5927 2.4738 25 6 0.2598 -3.1225 2.4762 26 1 -0.4851 0.8367 -0.0742 27 1 2.8557 -5.8813 0.3239 28 1 2.1561 -6.0990 -1.2982 29 1 1.1501 -7.2843 1.3280 30 1 1.7849 -8.1638 -0.0864 31 1 -0.8226 -9.4118 -0.1247 32 1 -0.9075 -4.1162 -0.7016 33 1 0.1870 -4.6718 -1.9943 34 1 -0.7877 -2.3488 0.6395 35 1 1.2232 -1.0993 2.6966 36 1 -0.6161 -1.0787 2.8289 37 1 -0.6448 -3.6151 2.8327 38 1 1.1945 -3.6364 2.7006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266272465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:34 Heat of formation + Delta-G solvation = 44.288373 kcal Electronic energy + Delta-G solvation = -21857.031949 eV Core-core repulsion = 18700.938325 eV Total energy + Delta-G solvation = -3156.093624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46439 -40.76112 -38.07510 -36.85702 -34.86270 -33.54060 -32.94736 -30.75100 -30.07867 -27.20426 -24.95518 -23.79085 -23.05475 -22.97611 -22.38507 -20.59922 -19.45642 -18.77405 -18.27853 -17.58348 -16.96644 -16.31937 -15.91015 -15.83673 -15.43405 -15.11596 -14.85465 -14.66430 -14.35515 -13.95123 -13.72658 -13.61201 -13.22644 -12.90938 -12.83479 -12.48467 -12.39850 -12.26213 -12.13396 -11.90325 -11.59738 -11.46675 -11.42510 -11.05068 -10.67956 -10.43012 -10.15441 -9.55803 -9.19850 -8.28585 -5.93242 0.92425 1.36022 1.41364 1.51481 1.83764 1.89447 2.14631 2.28818 2.95127 3.04613 3.21155 3.61417 3.84358 3.93562 3.97657 4.13082 4.21596 4.29115 4.33319 4.45666 4.53258 4.62348 4.67970 4.74856 4.82920 4.93043 5.00538 5.10757 5.13530 5.31076 5.38030 5.42778 5.43756 5.49374 5.53549 5.81033 6.17459 6.39732 6.57558 6.75466 7.23387 7.53311 8.10755 8.75896 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027867 B = 0.005307 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.534853 B = 5274.869960 C = 5464.262549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.349 4.349 8 H 0.063 0.937 9 N -0.430 5.430 10 C 0.452 3.548 11 O -0.629 6.629 12 C -0.080 4.080 13 H 0.108 0.892 14 C -0.095 4.095 15 C -0.029 4.029 16 C -0.246 4.246 17 C 0.060 3.940 18 N -0.325 5.325 19 N -0.469 5.469 20 H 0.445 0.555 21 C 0.092 3.908 22 C -0.035 4.035 23 C 0.107 3.893 24 C -0.154 4.154 25 C -0.182 4.182 26 H 0.271 0.729 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.215 0.785 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -11.049 4.183 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.185 4.185 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.081 0.919 9 N -0.148 5.148 10 C 0.242 3.758 11 O -0.517 6.517 12 C -0.102 4.102 13 H 0.126 0.874 14 C -0.133 4.133 15 C -0.067 4.067 16 C -0.258 4.258 17 C -0.125 4.125 18 N -0.148 5.148 19 N -0.177 5.177 20 H 0.290 0.710 21 C -0.039 4.039 22 C -0.074 4.074 23 C 0.002 3.998 24 C -0.191 4.191 25 C -0.220 4.220 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.231 0.769 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.878 -11.240 3.532 13.167 hybrid contribution 0.923 1.994 -0.389 2.231 sum -4.955 -9.247 3.143 10.951 Atomic orbital electron populations 1.69899 1.06425 1.28382 1.46876 1.25787 0.96114 1.01317 0.95307 0.85278 0.78514 0.78371 0.78317 1.20517 1.19351 1.19830 1.19367 0.93706 0.84741 1.49826 0.91869 1.43259 1.25496 1.05473 1.40546 1.20885 0.87140 0.86090 0.81665 1.90476 1.28314 1.87111 1.45751 1.21155 0.95127 0.92343 1.01555 0.87422 1.21365 0.97528 0.93039 1.01356 1.20004 0.89620 0.96914 1.00166 1.20203 1.00585 0.92576 1.12389 1.24081 0.90202 1.00895 0.97299 1.77408 1.24067 0.90247 1.23055 1.46045 1.14069 1.08649 1.48985 0.70984 1.20827 0.87521 0.96726 0.98788 1.20006 0.96447 0.91062 0.99902 1.21097 0.89135 1.04758 0.84768 1.22724 1.01903 0.93822 1.00674 1.23564 1.03792 0.94411 1.00190 0.91893 0.91975 0.93129 0.89622 0.88922 0.76889 0.89612 0.91199 0.88473 0.91272 0.88479 0.85740 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.53 11.14 21.66 0.24 -44.29 16 2 C 0.02 0.97 4.73 84.93 0.40 1.37 16 3 Si 0.97 41.81 29.58 68.60 2.03 43.84 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.35 -19.33 8.80 84.04 0.74 -18.59 16 8 H 0.06 3.82 7.49 -2.91 -0.02 3.80 16 9 N -0.43 -21.23 2.91 -613.13 -1.78 -23.01 16 10 C 0.45 21.49 6.65 87.66 0.58 22.07 16 11 O -0.63 -35.20 15.91 -3.05 -0.05 -35.24 16 12 C -0.08 -2.79 1.79 -11.37 -0.02 -2.81 16 13 H 0.11 3.40 5.32 -2.39 -0.01 3.39 16 14 C -0.09 -2.96 4.56 30.75 0.14 -2.82 16 15 C -0.03 -0.66 6.28 30.01 0.19 -0.47 16 16 C -0.25 -6.22 5.91 -20.14 -0.12 -6.34 16 17 C 0.06 1.36 12.00 85.06 1.02 2.38 16 18 N -0.33 -8.57 12.71 -57.28 -0.73 -9.29 16 19 N -0.47 -11.89 7.34 -47.99 -0.35 -12.25 16 20 H 0.44 9.10 8.96 -213.19 -1.91 7.19 16 21 C 0.09 2.54 7.08 41.64 0.29 2.84 16 22 C -0.03 -1.10 5.51 30.02 0.17 -0.94 16 23 C 0.11 4.41 3.06 44.99 0.14 4.54 16 24 C -0.15 -5.86 8.89 30.60 0.27 -5.59 16 25 C -0.18 -5.80 8.30 30.59 0.25 -5.55 16 26 H 0.27 13.02 8.32 -92.71 -0.77 12.25 16 27 H 0.06 2.02 8.08 -2.39 -0.02 2.01 16 28 H 0.05 1.74 8.11 -2.39 -0.02 1.72 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.09 2.71 7.20 -2.39 -0.02 2.69 16 33 H 0.07 2.45 8.12 -2.38 -0.02 2.43 16 34 H 0.10 4.11 7.44 -2.39 -0.02 4.10 16 35 H 0.07 2.94 8.00 -2.39 -0.02 2.92 16 36 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 37 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.09 2.84 7.92 -2.39 -0.02 2.82 16 Total: -1.00 -67.17 310.05 2.59 -64.58 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.83 Total: 25.57 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.06 Total: -9.90 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -2.62 Total: -88.84 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.05 Total: -35.24 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -67.17 2.59 -64.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266272465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.870 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds