Wall clock time and date at job start Mon Mar 30 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00029 * 2 1 4 4 H 1.48501 * 109.47086 * 273.93529 * 3 2 1 5 5 H 1.48506 * 109.46758 * 33.93122 * 3 2 1 6 6 H 1.48498 * 109.47535 * 153.93367 * 3 2 1 7 7 C 1.38952 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99847 * 337.84391 * 7 2 1 9 9 N 1.37095 * 119.99832 * 157.83467 * 7 2 1 10 10 C 1.34774 * 120.00579 * 320.88756 * 9 7 2 11 11 O 1.21295 * 119.99772 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00295 * 180.02562 * 10 9 7 13 13 H 1.08991 * 109.46080 * 60.02003 * 12 10 9 14 14 C 1.53108 * 109.46395 * 180.02562 * 12 10 9 15 15 C 1.53363 * 109.50540 * 190.29319 * 14 12 10 16 16 C 1.50845 * 108.36902 * 310.03918 * 15 14 12 17 17 C 1.39295 * 127.89419 * 196.64022 * 16 15 14 18 18 N 1.31072 * 108.08041 * 179.57346 * 17 16 15 19 19 N 1.40307 * 108.26540 * 0.43533 * 18 17 16 20 20 H 0.97000 * 126.08728 * 179.86383 * 19 18 17 21 21 C 1.34329 * 107.81425 * 359.61141 * 19 18 17 22 22 C 1.50829 * 128.02832 * 180.09208 * 21 19 18 23 23 C 1.46499 * 119.99796 * 140.89271 * 9 7 2 24 24 C 1.53004 * 117.49746 * 3.25701 * 23 9 7 25 25 C 1.52999 * 117.49910 * 294.59612 * 23 9 7 26 26 H 0.97000 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46819 * 70.27529 * 14 12 10 28 28 H 1.09004 * 109.45972 * 310.29486 * 14 12 10 29 29 H 1.08996 * 109.68477 * 190.32253 * 15 14 12 30 30 H 1.08999 * 109.71985 * 69.77662 * 15 14 12 31 31 H 1.07998 * 125.96198 * 359.87610 * 17 16 15 32 32 H 1.08999 * 109.67885 * 316.29803 * 22 21 19 33 33 H 1.09002 * 109.68039 * 76.85501 * 22 21 19 34 34 H 1.09007 * 115.55366 * 148.92185 * 23 9 7 35 35 H 1.08997 * 117.50079 * 359.97438 * 24 23 9 36 36 H 1.08994 * 117.50059 * 145.02442 * 24 23 9 37 37 H 1.09001 * 117.49945 * 214.97592 * 25 23 9 38 38 H 1.09005 * 117.50215 * 359.97305 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4124 2.0945 -1.3968 5 1 1.4895 2.6272 0.7816 6 1 3.5848 1.4177 0.6152 7 6 2.0089 -1.2033 0.0005 8 1 1.5288 -2.1039 0.3537 9 7 3.3039 -1.2472 -0.4474 10 6 3.6709 -0.5193 -1.5206 11 8 2.8555 0.1752 -2.0900 12 6 5.0943 -0.5681 -2.0133 13 1 5.3478 -1.5913 -2.2902 14 6 5.2430 0.3433 -3.2346 15 6 6.6083 0.1023 -3.8902 16 6 7.6687 0.1723 -2.8195 17 6 9.0426 0.3306 -2.9852 18 7 9.5962 0.3491 -1.7973 19 7 8.5842 0.1921 -0.8381 20 1 8.7076 0.1669 0.1237 21 6 7.4137 0.0884 -1.4889 22 6 6.0364 -0.0916 -0.9009 23 6 4.2888 -2.0856 0.2405 24 6 3.7938 -2.9465 1.4045 25 6 4.6548 -1.7107 1.6780 26 1 -0.4851 0.8400 -0.0004 27 1 5.1688 1.3848 -2.9218 28 1 4.4519 0.1220 -3.9512 29 1 6.7949 0.8688 -4.6423 30 1 6.6232 -0.8822 -4.3578 31 1 9.5608 0.4268 -3.9279 32 1 6.0713 -0.8360 -0.1055 33 1 5.6812 0.8580 -0.5005 34 1 5.0783 -2.4964 -0.3890 35 1 2.7355 -2.8887 1.6588 36 1 4.2579 -3.9232 1.5411 37 1 5.6849 -1.8750 1.9943 38 1 4.1631 -0.8399 2.1118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266272467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:38 Heat of formation + Delta-G solvation = 76.775919 kcal Electronic energy + Delta-G solvation = -22193.426696 eV Core-core repulsion = 19038.741838 eV Total energy + Delta-G solvation = -3154.684858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49321 -39.46775 -36.72848 -35.70286 -32.93837 -32.54988 -31.47856 -29.67296 -29.01412 -25.34381 -23.74315 -22.54861 -21.91662 -21.60550 -21.14345 -19.41453 -18.50576 -17.41371 -16.79671 -16.39183 -15.44504 -14.99655 -14.53965 -14.29275 -14.09001 -13.72477 -13.46701 -13.37960 -13.08616 -12.94622 -12.54039 -12.41446 -11.84722 -11.75642 -11.32726 -11.09552 -10.79317 -10.64950 -10.55747 -10.42777 -10.34775 -10.07616 -10.00765 -9.64207 -9.46848 -8.54577 -8.49835 -8.22571 -7.55182 -6.23715 -3.96774 1.89759 2.81133 2.82831 3.24866 3.40307 3.63563 3.73409 4.24017 4.39733 4.58523 4.68844 4.82397 4.96292 5.08042 5.12986 5.30481 5.33636 5.39865 5.51099 5.53334 5.62675 5.67721 5.76835 5.78187 5.96692 5.99402 6.04848 6.11019 6.25961 6.41482 6.49287 6.58056 6.61022 6.74310 6.76422 7.28842 7.67602 7.79721 7.91547 8.73122 8.86893 9.39188 9.77156 10.80845 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.007042 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.506181 B = 3975.378765 C = 4537.842405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.095 3.905 3 Si 0.908 3.092 4 H -0.249 1.249 5 H -0.311 1.311 6 H -0.281 1.281 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.432 5.432 10 C 0.451 3.549 11 O -0.536 6.536 12 C -0.091 4.091 13 H 0.090 0.910 14 C -0.100 4.100 15 C -0.040 4.040 16 C -0.241 4.241 17 C 0.056 3.944 18 N -0.306 5.306 19 N -0.472 5.472 20 H 0.436 0.564 21 C 0.099 3.901 22 C -0.061 4.061 23 C 0.064 3.936 24 C -0.173 4.173 25 C -0.203 4.203 26 H 0.272 0.728 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.181 0.819 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.096 -1.916 -1.754 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.115 4.115 3 Si 0.739 3.261 4 H -0.175 1.175 5 H -0.241 1.241 6 H -0.207 1.207 7 C -0.479 4.479 8 H 0.114 0.886 9 N -0.152 5.152 10 C 0.241 3.759 11 O -0.418 6.418 12 C -0.113 4.113 13 H 0.109 0.891 14 C -0.138 4.138 15 C -0.078 4.078 16 C -0.252 4.252 17 C -0.129 4.129 18 N -0.129 5.129 19 N -0.179 5.179 20 H 0.280 0.720 21 C -0.031 4.031 22 C -0.100 4.100 23 C -0.042 4.042 24 C -0.210 4.210 25 C -0.242 4.242 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.198 0.802 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.585 -1.390 -1.432 15.712 hybrid contribution -0.207 0.677 0.344 0.787 sum 15.378 -0.713 -1.088 15.433 Atomic orbital electron populations 1.69763 1.06913 1.28250 1.44649 1.25257 0.94841 0.99372 0.92035 0.86492 0.78906 0.82313 0.78398 1.17469 1.24074 1.20701 1.18751 0.85353 0.96416 1.47362 0.88599 1.43153 1.08372 1.40110 1.23571 1.20081 0.89290 0.84890 0.81622 1.90550 1.52658 1.41297 1.57311 1.21200 0.93339 1.01215 0.95552 0.89144 1.21412 0.96362 0.99599 0.96381 1.20033 0.91440 1.01539 0.94778 1.20007 0.94688 1.16644 0.93836 1.23565 0.93264 0.99593 0.96500 1.77435 1.12204 1.25705 0.97510 1.46021 1.04088 1.58714 1.09075 0.72035 1.21055 0.89094 0.99853 0.93068 1.20654 0.87301 1.03638 0.98424 1.21853 0.95320 0.99030 0.87996 1.23171 1.01802 0.93871 1.02165 1.23346 0.99449 1.00480 1.00957 0.91779 0.91634 0.90084 0.91071 0.91306 0.80223 0.88531 0.89534 0.87074 0.87034 0.89421 0.89652 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.87 13.96 55.50 0.77 -25.10 16 2 C 0.09 2.71 4.78 -17.47 -0.08 2.63 16 3 Si 0.91 23.63 24.84 -169.99 -4.22 19.41 16 4 H -0.25 -6.79 6.14 56.52 0.35 -6.44 16 5 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.35 -9.52 8.77 -14.93 -0.13 -9.65 16 8 H 0.10 2.70 6.89 -52.49 -0.36 2.34 16 9 N -0.43 -9.78 2.55 -107.72 -0.27 -10.05 16 10 C 0.45 10.13 5.32 -10.98 -0.06 10.07 16 11 O -0.54 -14.25 10.91 5.54 0.06 -14.19 16 12 C -0.09 -1.53 1.72 -91.53 -0.16 -1.69 16 13 H 0.09 1.37 7.54 -51.93 -0.39 0.98 16 14 C -0.10 -1.58 4.64 -26.49 -0.12 -1.71 16 15 C -0.04 -0.50 6.28 -27.62 -0.17 -0.67 16 16 C -0.24 -3.24 5.91 -105.05 -0.62 -3.86 16 17 C 0.06 0.70 12.00 -17.48 -0.21 0.49 16 18 N -0.31 -4.21 12.71 30.54 0.39 -3.82 16 19 N -0.47 -5.96 7.34 33.48 0.25 -5.71 16 20 H 0.44 4.26 8.96 -182.44 -1.64 2.62 16 21 C 0.10 1.37 7.08 -82.33 -0.58 0.79 16 22 C -0.06 -0.92 5.10 -27.63 -0.14 -1.06 16 23 C 0.06 1.11 4.28 -67.93 -0.29 0.82 16 24 C -0.17 -2.78 9.80 -26.69 -0.26 -3.04 16 25 C -0.20 -3.16 9.36 -26.69 -0.25 -3.41 16 26 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 28 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.31 4.62 -51.93 -0.24 1.07 16 33 H 0.09 1.45 8.12 -51.93 -0.42 1.03 16 34 H 0.11 1.63 6.42 -51.92 -0.33 1.29 16 35 H 0.11 2.08 6.46 -51.93 -0.34 1.75 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 299.66 15.07 4.52 4.52 Total: -1.00 -33.18 299.66 -7.86 -41.04 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.27 Total: 4.20 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.08 Total: -10.30 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 1.13 Total: -44.68 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.06 Total: -14.19 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.22 Total: 19.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.18 -7.86 -41.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266272467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.817 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds