Wall clock time and date at job start Mon Mar 30 2020 01:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00029 * 2 1 4 4 H 1.48501 * 109.47086 * 273.93529 * 3 2 1 5 5 H 1.48506 * 109.46758 * 33.93122 * 3 2 1 6 6 H 1.48498 * 109.47535 * 153.93367 * 3 2 1 7 7 C 1.38952 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99847 * 337.84391 * 7 2 1 9 9 N 1.37095 * 119.99832 * 157.83467 * 7 2 1 10 10 C 1.34774 * 120.00579 * 320.88756 * 9 7 2 11 11 O 1.21295 * 119.99772 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00295 * 180.02562 * 10 9 7 13 13 H 1.08991 * 109.46080 * 60.02003 * 12 10 9 14 14 C 1.53108 * 109.46395 * 180.02562 * 12 10 9 15 15 C 1.53363 * 109.50540 * 190.29319 * 14 12 10 16 16 C 1.50845 * 108.36902 * 310.03918 * 15 14 12 17 17 C 1.39295 * 127.89419 * 196.64022 * 16 15 14 18 18 N 1.31072 * 108.08041 * 179.57346 * 17 16 15 19 19 N 1.40307 * 108.26540 * 0.43533 * 18 17 16 20 20 H 0.97000 * 126.08728 * 179.86383 * 19 18 17 21 21 C 1.34329 * 107.81425 * 359.61141 * 19 18 17 22 22 C 1.50829 * 128.02832 * 180.09208 * 21 19 18 23 23 C 1.46499 * 119.99796 * 140.89271 * 9 7 2 24 24 C 1.53004 * 117.49746 * 3.25701 * 23 9 7 25 25 C 1.52999 * 117.49910 * 294.59612 * 23 9 7 26 26 H 0.97000 * 120.00379 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46819 * 70.27529 * 14 12 10 28 28 H 1.09004 * 109.45972 * 310.29486 * 14 12 10 29 29 H 1.08996 * 109.68477 * 190.32253 * 15 14 12 30 30 H 1.08999 * 109.71985 * 69.77662 * 15 14 12 31 31 H 1.07998 * 125.96198 * 359.87610 * 17 16 15 32 32 H 1.08999 * 109.67885 * 316.29803 * 22 21 19 33 33 H 1.09002 * 109.68039 * 76.85501 * 22 21 19 34 34 H 1.09007 * 115.55366 * 148.92185 * 23 9 7 35 35 H 1.08997 * 117.50079 * 359.97438 * 24 23 9 36 36 H 1.08994 * 117.50059 * 145.02442 * 24 23 9 37 37 H 1.09001 * 117.49945 * 214.97592 * 25 23 9 38 38 H 1.09005 * 117.50215 * 359.97305 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4124 2.0945 -1.3968 5 1 1.4895 2.6272 0.7816 6 1 3.5848 1.4177 0.6152 7 6 2.0089 -1.2033 0.0005 8 1 1.5288 -2.1039 0.3537 9 7 3.3039 -1.2472 -0.4474 10 6 3.6709 -0.5193 -1.5206 11 8 2.8555 0.1752 -2.0900 12 6 5.0943 -0.5681 -2.0133 13 1 5.3478 -1.5913 -2.2902 14 6 5.2430 0.3433 -3.2346 15 6 6.6083 0.1023 -3.8902 16 6 7.6687 0.1723 -2.8195 17 6 9.0426 0.3306 -2.9852 18 7 9.5962 0.3491 -1.7973 19 7 8.5842 0.1921 -0.8381 20 1 8.7076 0.1669 0.1237 21 6 7.4137 0.0884 -1.4889 22 6 6.0364 -0.0916 -0.9009 23 6 4.2888 -2.0856 0.2405 24 6 3.7938 -2.9465 1.4045 25 6 4.6548 -1.7107 1.6780 26 1 -0.4851 0.8400 -0.0004 27 1 5.1688 1.3848 -2.9218 28 1 4.4519 0.1220 -3.9512 29 1 6.7949 0.8688 -4.6423 30 1 6.6232 -0.8822 -4.3578 31 1 9.5608 0.4268 -3.9279 32 1 6.0713 -0.8360 -0.1055 33 1 5.6812 0.8580 -0.5005 34 1 5.0783 -2.4964 -0.3890 35 1 2.7355 -2.8887 1.6588 36 1 4.2579 -3.9232 1.5411 37 1 5.6849 -1.8750 1.9943 38 1 4.1631 -0.8399 2.1118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266272467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:38 Heat of formation + Delta-G solvation = 53.986329 kcal Electronic energy + Delta-G solvation = -22194.414927 eV Core-core repulsion = 19038.741838 eV Total energy + Delta-G solvation = -3155.673089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.52968 -41.09362 -38.20930 -37.08525 -34.86827 -33.67577 -33.25293 -30.89651 -30.10667 -27.19063 -25.00811 -23.89934 -23.15664 -22.80398 -22.40427 -21.04260 -19.73188 -18.84222 -18.28536 -17.86280 -17.25722 -16.27394 -15.93804 -15.82787 -15.22333 -15.12637 -14.88273 -14.78242 -14.76497 -14.36529 -13.99076 -13.69446 -13.49749 -13.11281 -12.91070 -12.45485 -12.34048 -12.15916 -12.09441 -11.81990 -11.77420 -11.47252 -11.42405 -11.19075 -10.72002 -10.44331 -10.31994 -9.40346 -9.22025 -8.42602 -6.12075 0.90049 1.18545 1.30275 1.49612 1.82774 1.85924 2.02967 2.42558 2.61250 2.95412 3.22949 3.50393 3.74236 3.82139 3.92794 4.02117 4.10377 4.18122 4.22824 4.30500 4.38361 4.54637 4.57979 4.64203 4.87169 4.87970 4.93897 4.99522 5.10055 5.24074 5.29819 5.37483 5.42219 5.45564 5.69831 5.77279 5.86907 6.40095 6.73676 6.76696 6.91181 7.36870 7.89546 8.65465 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.007042 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.506181 B = 3975.378765 C = 4537.842405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.046 3.954 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.314 1.314 6 H -0.258 1.258 7 C -0.341 4.341 8 H 0.072 0.928 9 N -0.447 5.447 10 C 0.446 3.554 11 O -0.585 6.585 12 C -0.081 4.081 13 H 0.118 0.882 14 C -0.099 4.099 15 C -0.028 4.028 16 C -0.249 4.249 17 C 0.059 3.941 18 N -0.324 5.324 19 N -0.465 5.465 20 H 0.447 0.553 21 C 0.092 3.908 22 C -0.051 4.051 23 C 0.044 3.956 24 C -0.172 4.172 25 C -0.185 4.185 26 H 0.271 0.729 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.211 0.789 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.149 -2.960 -1.909 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.159 4.159 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.244 1.244 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.090 0.910 9 N -0.167 5.167 10 C 0.238 3.762 11 O -0.470 6.470 12 C -0.103 4.103 13 H 0.136 0.864 14 C -0.137 4.137 15 C -0.067 4.067 16 C -0.260 4.260 17 C -0.126 4.126 18 N -0.146 5.146 19 N -0.174 5.174 20 H 0.293 0.707 21 C -0.039 4.039 22 C -0.090 4.090 23 C -0.060 4.060 24 C -0.209 4.209 25 C -0.223 4.223 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.228 0.772 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.687 -2.459 -1.538 19.900 hybrid contribution -1.443 0.901 0.348 1.737 sum 18.244 -1.558 -1.190 18.349 Atomic orbital electron populations 1.69854 1.08152 1.28528 1.48156 1.25878 0.95286 1.01967 0.92739 0.85708 0.79073 0.79743 0.76936 1.19952 1.24429 1.18232 1.18662 0.87621 0.95033 1.45429 0.90988 1.43320 1.08011 1.40969 1.24390 1.21140 0.91321 0.83047 0.80676 1.90517 1.54704 1.43195 1.58579 1.21163 0.89608 1.03128 0.96387 0.86434 1.21394 0.98268 0.98155 0.95908 1.19980 0.88741 1.03243 0.94692 1.20197 0.95382 1.16615 0.93816 1.24047 0.92883 0.98366 0.97304 1.77430 1.12783 1.26250 0.98175 1.46022 1.03403 1.58276 1.09702 0.70725 1.20818 0.88752 1.00907 0.93413 1.20451 0.87521 1.03034 0.97976 1.22236 0.95346 0.99274 0.89139 1.23208 1.00383 0.96143 1.01189 1.23399 1.01545 0.98930 0.98471 0.92024 0.93724 0.91642 0.89317 0.89423 0.77219 0.86734 0.91640 0.83251 0.90657 0.85417 0.84836 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.30 13.96 21.66 0.30 -57.00 16 2 C 0.05 2.71 4.78 84.93 0.41 3.12 16 3 Si 0.95 50.45 24.84 68.60 1.70 52.15 16 4 H -0.27 -15.33 6.14 99.48 0.61 -14.72 16 5 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 6 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.34 -18.86 8.77 84.04 0.74 -18.12 16 8 H 0.07 4.25 6.89 -2.91 -0.02 4.23 16 9 N -0.45 -19.98 2.55 -613.11 -1.56 -21.54 16 10 C 0.45 19.83 5.32 87.66 0.47 20.30 16 11 O -0.58 -31.82 10.91 -3.08 -0.03 -31.85 16 12 C -0.08 -2.54 1.72 -11.38 -0.02 -2.56 16 13 H 0.12 3.09 7.54 -2.39 -0.02 3.07 16 14 C -0.10 -3.01 4.64 30.75 0.14 -2.86 16 15 C -0.03 -0.62 6.28 30.02 0.19 -0.43 16 16 C -0.25 -5.74 5.91 -20.14 -0.12 -5.86 16 17 C 0.06 1.23 12.00 85.06 1.02 2.25 16 18 N -0.32 -7.71 12.71 -57.28 -0.73 -8.43 16 19 N -0.47 -10.03 7.34 -47.98 -0.35 -10.39 16 20 H 0.45 7.09 8.96 -213.19 -1.91 5.18 16 21 C 0.09 2.20 7.08 41.64 0.29 2.50 16 22 C -0.05 -1.36 5.10 30.01 0.15 -1.21 16 23 C 0.04 1.40 4.28 44.99 0.19 1.60 16 24 C -0.17 -5.11 9.80 30.62 0.30 -4.81 16 25 C -0.19 -5.12 9.36 30.62 0.29 -4.83 16 26 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 27 H 0.04 1.52 8.11 -2.39 -0.02 1.50 16 28 H 0.06 2.17 7.75 -2.38 -0.02 2.15 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.21 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.11 2.61 4.62 -2.39 -0.01 2.60 16 33 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 34 H 0.15 3.60 6.42 -2.38 -0.02 3.59 16 35 H 0.07 2.83 6.46 -2.39 -0.02 2.81 16 36 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -76.35 299.66 2.47 -73.89 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.91 Total: 14.11 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.05 Total: -10.93 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -2.34 Total: -97.36 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.03 Total: -31.85 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 1.70 Total: 52.15 kcal Total: -76.35 2.47 -73.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266272467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.872 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds