Wall clock time and date at job start Mon Mar 30 2020 01:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99812 * 2 1 4 4 O 1.20823 * 120.00316 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99613 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.27021 * 299.50580 * 5 3 2 7 7 C 1.50618 * 109.24256 * 58.99772 * 5 3 2 8 8 C 1.38741 * 118.42477 * 317.59633 * 7 5 3 9 9 C 1.38016 * 120.38033 * 180.17173 * 8 7 5 10 10 C 1.38262 * 119.86861 * 0.02562 * 9 8 7 11 11 C 1.38038 * 119.82865 * 359.92092 * 10 9 8 12 12 C 1.37837 * 121.85655 * 137.64111 * 7 5 3 13 13 C 1.50714 * 121.65978 * 359.67437 * 12 7 5 14 14 C 1.52892 * 109.95049 * 16.86265 * 13 12 7 15 15 N 1.46625 * 109.26784 * 179.97438 * 5 3 2 16 16 C 1.46907 * 111.00088 * 63.88859 * 15 5 3 17 17 C 1.50697 * 109.46800 * 64.74068 * 16 15 5 18 18 H 1.08003 * 120.00369 * 4.85635 * 17 16 15 19 19 C 1.37885 * 119.99993 * 184.84820 * 17 16 15 20 20 N 1.31509 * 119.99592 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00220 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47179 * 60.00038 * 21 19 17 23 23 H 1.48499 * 109.47263 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46949 * 300.00233 * 21 19 17 25 25 H 1.08995 * 109.46847 * 60.00329 * 1 2 3 26 26 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47021 * 300.00124 * 1 2 3 28 28 H 1.08002 * 119.80728 * 0.16042 * 8 7 5 29 29 H 1.07995 * 120.06580 * 179.97438 * 9 8 7 30 30 H 1.07998 * 120.08545 * 179.97438 * 10 9 8 31 31 H 1.07996 * 119.83102 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.39446 * 137.01409 * 13 12 7 33 33 H 1.09006 * 109.39207 * 256.72063 * 13 12 7 34 34 H 1.09000 * 109.63971 * 189.88173 * 14 13 12 35 35 H 1.09003 * 109.62451 * 69.29006 * 14 13 12 36 36 H 1.08995 * 109.47214 * 184.74427 * 16 15 5 37 37 H 1.08997 * 109.46739 * 304.74668 * 16 15 5 38 38 H 0.97007 * 120.00095 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9518 0.7878 0.8963 7 6 4.1009 0.5691 -1.2180 8 6 3.5306 -0.6418 -1.5831 9 6 3.9914 -1.3246 -2.6905 10 6 5.0276 -0.8003 -3.4408 11 6 5.5954 0.4049 -3.0796 12 6 5.1317 1.0928 -1.9683 13 6 5.7787 2.4074 -1.6151 14 6 5.4344 2.7880 -0.1749 15 7 3.9772 2.6824 -0.0002 16 6 3.5447 3.3577 1.2307 17 6 4.2538 2.7493 2.4131 18 1 5.0126 1.9963 2.2589 19 6 3.9339 3.1539 3.6918 20 7 3.0098 4.0705 3.8796 21 14 4.8133 2.4003 5.1574 22 1 6.2705 2.6664 5.0509 23 1 4.2912 3.0016 6.4108 24 1 4.5779 0.9341 5.1756 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.7215 -1.0525 -0.9973 29 1 3.5440 -2.2671 -2.9698 30 1 5.3912 -1.3319 -4.3077 31 1 6.4051 0.8143 -3.6654 32 1 6.8602 2.3175 -1.7171 33 1 5.4162 3.1822 -2.2907 34 1 5.7534 3.8120 0.0196 35 1 5.9364 2.1080 0.5134 36 1 3.7876 4.4184 1.1678 37 1 2.4681 3.2380 1.3517 38 1 2.7844 4.3550 4.7792 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267779711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:38 Heat of formation + Delta-G solvation = -45.307435 kcal Electronic energy + Delta-G solvation = -22018.415924 eV Core-core repulsion = 18826.144383 eV Total energy + Delta-G solvation = -3192.271541 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54656 -39.08468 -36.99233 -35.58972 -33.10026 -32.47822 -31.16372 -29.05812 -27.66646 -26.81603 -24.74558 -23.32425 -22.35003 -21.36415 -20.59365 -18.94165 -17.34969 -16.68257 -16.39471 -15.95089 -15.49046 -15.26407 -15.00829 -14.50640 -14.10425 -13.53473 -13.43151 -13.01610 -13.00489 -12.79103 -12.34221 -12.04173 -11.86926 -11.77222 -11.51819 -11.20606 -11.07879 -10.90500 -10.69158 -10.49591 -10.29451 -10.19966 -9.97088 -9.81227 -9.35630 -8.56099 -8.41308 -8.30706 -7.34039 -6.05054 -4.15781 1.53891 1.61941 2.87379 3.09727 3.26057 3.31629 3.33183 4.00751 4.37132 4.79971 4.98274 5.04137 5.15375 5.25549 5.31215 5.31477 5.42284 5.47482 5.52869 5.70299 5.77632 5.86593 5.94441 6.01560 6.06756 6.23630 6.33499 6.43142 6.64379 6.70530 6.72187 6.80204 6.92352 7.17117 7.23185 7.55056 7.86483 7.91166 8.14081 8.23712 8.43644 8.94841 9.50972 10.99998 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.006992 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.037407 B = 4003.648149 C = 4796.095533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.475 3.525 4 O -0.474 6.474 5 C 0.140 3.860 6 H 0.099 0.901 7 C -0.073 4.073 8 C -0.115 4.115 9 C -0.131 4.131 10 C -0.122 4.122 11 C -0.129 4.129 12 C -0.053 4.053 13 C -0.083 4.083 14 C 0.065 3.935 15 N -0.518 5.518 16 C 0.174 3.826 17 C -0.563 4.563 18 H 0.056 0.944 19 C 0.069 3.931 20 N -0.884 5.884 21 Si 0.887 3.113 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -9.854 -11.778 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.316 3.684 4 O -0.358 6.358 5 C 0.030 3.970 6 H 0.116 0.884 7 C -0.074 4.074 8 C -0.133 4.133 9 C -0.149 4.149 10 C -0.140 4.140 11 C -0.147 4.147 12 C -0.054 4.054 13 C -0.120 4.120 14 C -0.064 4.064 15 N -0.243 5.243 16 C 0.049 3.951 17 C -0.602 4.602 18 H 0.074 0.926 19 C -0.135 4.135 20 N -0.522 5.522 21 Si 0.715 3.285 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.202 1.202 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.029 -9.160 -12.027 15.153 hybrid contribution 0.610 -0.730 1.690 1.940 sum 1.639 -9.890 -10.336 14.399 Atomic orbital electron populations 1.23164 0.77424 1.02899 1.02469 1.86471 1.22658 1.34147 1.85011 1.23389 0.91386 0.81091 0.72509 1.90631 1.66430 1.35808 1.42902 1.19853 0.86994 0.93331 0.96776 0.88385 1.19409 0.96751 0.95074 0.96170 1.21631 1.00196 0.94313 0.97166 1.20990 0.97807 1.00045 0.96054 1.21043 0.97030 0.96222 0.99734 1.21041 1.00781 0.95648 0.97194 1.19651 0.95316 0.96156 0.94228 1.20714 0.98963 0.93813 0.98527 1.21955 0.88838 1.01923 0.93634 1.62646 1.12040 1.08246 1.41337 1.20113 0.98475 0.94150 0.82364 1.21752 1.22241 1.23855 0.92315 0.92559 1.24948 0.94832 0.94834 0.98878 1.69952 1.30515 1.29614 1.22095 0.86732 0.80110 0.79548 0.82117 1.20125 1.21108 1.20215 0.92304 0.88687 0.91937 0.83992 0.86359 0.86525 0.86304 0.90874 0.90092 0.89979 0.93840 0.94799 0.92176 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.54 16 2 O -0.37 -6.30 7.57 -39.26 -0.30 -6.60 16 3 C 0.48 9.96 6.75 36.01 0.24 10.20 16 4 O -0.47 -11.36 13.88 -18.75 -0.26 -11.62 16 5 C 0.14 2.89 2.12 -70.20 -0.15 2.74 16 6 H 0.10 2.15 6.73 -51.93 -0.35 1.80 16 7 C -0.07 -1.29 5.46 -104.62 -0.57 -1.86 16 8 C -0.12 -1.77 8.98 -39.48 -0.35 -2.13 16 9 C -0.13 -1.70 10.05 -39.65 -0.40 -2.10 16 10 C -0.12 -1.51 10.05 -39.65 -0.40 -1.91 16 11 C -0.13 -1.72 9.66 -39.49 -0.38 -2.10 16 12 C -0.05 -0.85 5.77 -104.60 -0.60 -1.46 16 13 C -0.08 -1.27 5.94 -27.93 -0.17 -1.44 16 14 C 0.06 1.23 4.90 -3.74 -0.02 1.21 16 15 N -0.52 -11.48 4.41 -230.99 -1.02 -12.49 16 16 C 0.17 4.59 4.72 -4.97 -0.02 4.57 16 17 C -0.56 -15.34 7.62 -34.44 -0.26 -15.61 16 18 H 0.06 1.49 5.93 -52.48 -0.31 1.18 16 19 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 20 N -0.88 -26.22 13.29 55.43 0.74 -25.48 16 21 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 28 H 0.14 2.12 5.26 -52.49 -0.28 1.85 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.56 8.02 -51.93 -0.42 1.14 16 35 H 0.04 0.86 6.80 -51.93 -0.35 0.51 16 36 H 0.03 0.95 8.13 -51.93 -0.42 0.53 16 37 H 0.06 1.77 5.60 -51.93 -0.29 1.48 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -31.62 307.67 -8.27 -39.90 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.93 Total: 1.93 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.11 Total: -6.50 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.28 Total: -37.97 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.56 Total: -18.22 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.62 -8.27 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267779711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.412 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds