Wall clock time and date at job start Mon Mar 30 2020 01:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99812 * 2 1 4 4 O 1.20823 * 120.00316 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99613 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.27021 * 299.50580 * 5 3 2 7 7 C 1.50618 * 109.24256 * 58.99772 * 5 3 2 8 8 C 1.38741 * 118.42477 * 317.59633 * 7 5 3 9 9 C 1.38016 * 120.38033 * 180.17173 * 8 7 5 10 10 C 1.38262 * 119.86861 * 0.02562 * 9 8 7 11 11 C 1.38038 * 119.82865 * 359.92092 * 10 9 8 12 12 C 1.37837 * 121.85655 * 137.64111 * 7 5 3 13 13 C 1.50714 * 121.65978 * 359.67437 * 12 7 5 14 14 C 1.52892 * 109.95049 * 16.86265 * 13 12 7 15 15 N 1.46625 * 109.26784 * 179.97438 * 5 3 2 16 16 C 1.46907 * 111.00088 * 63.88859 * 15 5 3 17 17 C 1.50697 * 109.46800 * 64.74068 * 16 15 5 18 18 H 1.08003 * 120.00369 * 4.85635 * 17 16 15 19 19 C 1.37885 * 119.99993 * 184.84820 * 17 16 15 20 20 N 1.31509 * 119.99592 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00220 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47179 * 60.00038 * 21 19 17 23 23 H 1.48499 * 109.47263 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46949 * 300.00233 * 21 19 17 25 25 H 1.08995 * 109.46847 * 60.00329 * 1 2 3 26 26 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47021 * 300.00124 * 1 2 3 28 28 H 1.08002 * 119.80728 * 0.16042 * 8 7 5 29 29 H 1.07995 * 120.06580 * 179.97438 * 9 8 7 30 30 H 1.07998 * 120.08545 * 179.97438 * 10 9 8 31 31 H 1.07996 * 119.83102 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.39446 * 137.01409 * 13 12 7 33 33 H 1.09006 * 109.39207 * 256.72063 * 13 12 7 34 34 H 1.09000 * 109.63971 * 189.88173 * 14 13 12 35 35 H 1.09003 * 109.62451 * 69.29006 * 14 13 12 36 36 H 1.08995 * 109.47214 * 184.74427 * 16 15 5 37 37 H 1.08997 * 109.46739 * 304.74668 * 16 15 5 38 38 H 0.97007 * 120.00095 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9518 0.7878 0.8963 7 6 4.1009 0.5691 -1.2180 8 6 3.5306 -0.6418 -1.5831 9 6 3.9914 -1.3246 -2.6905 10 6 5.0276 -0.8003 -3.4408 11 6 5.5954 0.4049 -3.0796 12 6 5.1317 1.0928 -1.9683 13 6 5.7787 2.4074 -1.6151 14 6 5.4344 2.7880 -0.1749 15 7 3.9772 2.6824 -0.0002 16 6 3.5447 3.3577 1.2307 17 6 4.2538 2.7493 2.4131 18 1 5.0126 1.9963 2.2589 19 6 3.9339 3.1539 3.6918 20 7 3.0098 4.0705 3.8796 21 14 4.8133 2.4003 5.1574 22 1 6.2705 2.6664 5.0509 23 1 4.2912 3.0016 6.4108 24 1 4.5779 0.9341 5.1756 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.7215 -1.0525 -0.9973 29 1 3.5440 -2.2671 -2.9698 30 1 5.3912 -1.3319 -4.3077 31 1 6.4051 0.8143 -3.6654 32 1 6.8602 2.3175 -1.7171 33 1 5.4162 3.1822 -2.2907 34 1 5.7534 3.8120 0.0196 35 1 5.9364 2.1080 0.5134 36 1 3.7876 4.4184 1.1678 37 1 2.4681 3.2380 1.3517 38 1 2.7844 4.3550 4.7792 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267779711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:37 Heat of formation + Delta-G solvation = -65.175441 kcal Electronic energy + Delta-G solvation = -22019.277465 eV Core-core repulsion = 18826.144383 eV Total energy + Delta-G solvation = -3193.133082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.04236 -40.41599 -38.49515 -37.17822 -34.98642 -33.89174 -32.67603 -30.31207 -29.08872 -28.48939 -26.41005 -24.86434 -23.64977 -22.92867 -22.02135 -20.43373 -18.98366 -18.42884 -17.88251 -17.52184 -16.84838 -16.73637 -16.48683 -16.16508 -15.50720 -14.96683 -14.74996 -14.56242 -14.44400 -14.24051 -13.85994 -13.46147 -13.35679 -13.12061 -13.01098 -12.82578 -12.78693 -12.53497 -12.31832 -12.05465 -11.90425 -11.89921 -11.60422 -11.38769 -11.13369 -10.58418 -9.70303 -9.44749 -9.15307 -8.19392 -6.40611 0.40833 0.54788 1.23606 1.34213 1.36379 1.44556 1.68764 2.33700 2.91368 3.05813 3.17163 3.63510 3.83769 3.93978 4.10856 4.27408 4.30271 4.34637 4.37601 4.41283 4.50947 4.62984 4.68766 4.72679 4.88325 4.98811 5.04903 5.17931 5.20536 5.24954 5.31268 5.38510 5.61831 5.68143 5.69898 5.76414 5.93515 6.10451 6.20779 6.31843 6.79631 6.82212 7.31071 8.84118 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.006992 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.037407 B = 4003.648149 C = 4796.095533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.474 3.526 4 O -0.516 6.516 5 C 0.143 3.857 6 H 0.075 0.925 7 C -0.104 4.104 8 C -0.127 4.127 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.125 4.125 12 C -0.072 4.072 13 C -0.072 4.072 14 C 0.063 3.937 15 N -0.525 5.525 16 C 0.190 3.810 17 C -0.566 4.566 18 H 0.062 0.938 19 C 0.012 3.988 20 N -0.925 5.925 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.062 0.938 26 H 0.143 0.857 27 H 0.047 0.953 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.003 0.997 37 H 0.025 0.975 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -12.623 -13.632 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.317 3.683 4 O -0.403 6.403 5 C 0.032 3.968 6 H 0.092 0.908 7 C -0.104 4.104 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.130 4.130 11 C -0.143 4.143 12 C -0.073 4.073 13 C -0.109 4.109 14 C -0.065 4.065 15 N -0.249 5.249 16 C 0.064 3.936 17 C -0.605 4.605 18 H 0.080 0.920 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.783 3.217 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.194 1.194 25 H 0.081 0.919 26 H 0.161 0.839 27 H 0.066 0.934 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.043 0.957 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.695 -11.965 -13.904 18.540 hybrid contribution 0.035 0.054 2.161 2.162 sum 2.730 -11.912 -11.742 16.948 Atomic orbital electron populations 1.23548 0.75233 1.05873 1.02000 1.86470 1.24724 1.31995 1.84143 1.23641 0.91816 0.81448 0.71422 1.90606 1.67321 1.37315 1.45095 1.19809 0.86977 0.92013 0.97956 0.90758 1.19315 0.98707 0.96378 0.96013 1.21685 1.00476 0.93923 0.98386 1.21369 0.97609 1.00763 0.94654 1.21528 0.95735 0.95578 1.00124 1.21365 1.01148 0.95705 0.96042 1.19810 0.95378 0.96637 0.95433 1.20658 1.01015 0.93993 0.95270 1.22039 0.86699 1.01273 0.96476 1.62515 1.14120 1.09624 1.38645 1.19663 0.96405 0.92976 0.84550 1.21984 1.22092 1.23624 0.92823 0.92031 1.25880 0.95564 0.95227 1.02098 1.70102 1.32207 1.31214 1.22842 0.85596 0.79207 0.78797 0.78081 1.18883 1.20673 1.19363 0.91922 0.83888 0.93382 0.84317 0.83232 0.82670 0.83266 0.87516 0.89746 0.90807 0.94979 0.97869 0.95708 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -12.49 7.57 -51.43 -0.39 -12.88 16 3 C 0.47 20.83 6.75 71.24 0.48 21.31 16 4 O -0.52 -26.35 13.88 21.97 0.30 -26.05 16 5 C 0.14 6.12 2.12 43.45 0.09 6.22 16 6 H 0.08 3.46 6.73 -2.39 -0.02 3.45 16 7 C -0.10 -3.61 5.46 -19.86 -0.11 -3.72 16 8 C -0.13 -3.71 8.98 22.34 0.20 -3.51 16 9 C -0.13 -2.79 10.05 22.22 0.22 -2.56 16 10 C -0.11 -2.20 10.05 22.23 0.22 -1.98 16 11 C -0.12 -2.82 9.66 22.33 0.22 -2.61 16 12 C -0.07 -2.18 5.77 -19.85 -0.11 -2.30 16 13 C -0.07 -2.13 5.94 29.82 0.18 -1.95 16 14 C 0.06 2.46 4.90 86.22 0.42 2.88 16 15 N -0.52 -24.51 4.41 -884.73 -3.90 -28.41 16 16 C 0.19 10.76 4.72 85.55 0.40 11.17 16 17 C -0.57 -32.25 7.62 25.60 0.20 -32.05 16 18 H 0.06 3.37 5.93 -2.91 -0.02 3.35 16 19 C 0.01 0.70 5.46 84.66 0.46 1.17 16 20 N -0.92 -57.10 13.29 21.45 0.28 -56.82 16 21 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 26 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 28 H 0.14 4.02 5.26 -2.91 -0.02 4.01 16 29 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.07 2.93 8.02 -2.39 -0.02 2.91 16 35 H 0.03 1.31 6.80 -2.39 -0.02 1.29 16 36 H 0.00 0.20 8.13 -2.39 -0.02 0.18 16 37 H 0.02 1.58 5.60 -2.39 -0.01 1.57 16 38 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -73.28 307.67 3.46 -69.81 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.07 Total: 13.99 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.07 Total: -6.03 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -3.62 Total: -85.23 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.08 Total: -38.92 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.28 3.46 -69.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267779711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.640 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds