Wall clock time and date at job start Mon Mar 30 2020 01:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00219 * 2 1 4 4 O 1.20832 * 119.99980 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00271 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.26575 * 70.04122 * 5 3 2 7 7 C 1.50623 * 109.24004 * 310.54400 * 5 3 2 8 8 C 1.38739 * 118.42704 * 42.37031 * 7 5 3 9 9 C 1.38004 * 120.37727 * 179.74488 * 8 7 5 10 10 C 1.38269 * 119.86971 * 359.72048 * 9 8 7 11 11 C 1.38030 * 119.82420 * 0.65664 * 10 9 8 12 12 C 1.37826 * 121.84623 * 222.23241 * 7 5 3 13 13 C 1.50712 * 121.66700 * 0.44683 * 12 7 5 14 14 C 1.52901 * 109.95440 * 343.08945 * 13 12 7 15 15 N 1.46633 * 109.27186 * 189.55038 * 5 3 2 16 16 C 1.46899 * 111.00083 * 49.32616 * 15 5 3 17 17 C 1.50694 * 109.47514 * 176.91237 * 16 15 5 18 18 H 1.08003 * 119.99773 * 5.34705 * 17 16 15 19 19 C 1.37874 * 120.00465 * 185.34655 * 17 16 15 20 20 N 1.31513 * 120.00566 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99784 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47181 * 90.00002 * 21 19 17 23 23 H 1.48500 * 109.47057 * 210.00173 * 21 19 17 24 24 H 1.48499 * 109.47141 * 329.99700 * 21 19 17 25 25 H 1.08997 * 109.46847 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.46944 * 59.99559 * 1 2 3 27 27 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.81086 * 359.71718 * 8 7 5 29 29 H 1.07999 * 120.06804 * 180.02562 * 9 8 7 30 30 H 1.07998 * 120.08665 * 180.36038 * 10 9 8 31 31 H 1.07998 * 119.82786 * 179.63906 * 11 10 9 32 32 H 1.09002 * 109.39483 * 103.23668 * 13 12 7 33 33 H 1.09006 * 109.39321 * 223.04189 * 13 12 7 34 34 H 1.08996 * 109.63475 * 170.10731 * 14 13 12 35 35 H 1.09004 * 109.62681 * 290.50071 * 14 13 12 36 36 H 1.09011 * 109.46903 * 296.91255 * 16 15 5 37 37 H 1.09004 * 109.47555 * 56.90491 * 16 15 5 38 38 H 0.96996 * 120.00766 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9443 0.9427 -0.9664 7 6 4.1100 0.3779 1.0816 8 6 3.5414 -0.8768 1.2468 9 6 4.0116 -1.7333 2.2213 10 6 5.0591 -1.3423 3.0347 11 6 5.6208 -0.0913 2.8770 12 6 5.1487 0.7703 1.8982 13 6 5.7938 2.1255 1.7617 14 6 5.4371 2.7393 0.4075 15 7 3.9782 2.6633 0.2301 16 6 3.2768 3.2360 1.3868 17 6 3.7798 4.6343 1.6375 18 1 4.4800 5.0874 0.9513 19 6 3.3461 5.3352 2.7428 20 7 3.7855 6.5552 2.9619 21 14 2.1355 4.5512 3.9300 22 1 2.8809 3.8268 4.9906 23 1 1.2949 5.6073 4.5490 24 1 1.2684 3.5964 3.1941 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.7259 -1.1848 0.6092 29 1 3.5656 -2.7091 2.3452 30 1 5.4337 -2.0120 3.7947 31 1 6.4351 0.2164 3.5162 32 1 5.4383 2.7777 2.5595 33 1 6.8763 2.0202 1.8357 34 1 5.7552 3.7815 0.3825 35 1 5.9351 2.1851 -0.3882 36 1 2.2061 3.2659 1.1842 37 1 3.4630 2.6197 2.2664 38 1 3.4807 7.0482 3.7396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267779713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:41 Heat of formation + Delta-G solvation = -26.650222 kcal Electronic energy + Delta-G solvation = -22403.596573 eV Core-core repulsion = 19212.134069 eV Total energy + Delta-G solvation = -3191.462503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97049 -39.30688 -37.20447 -35.85866 -32.76659 -32.53375 -30.92481 -29.03710 -28.06869 -27.56580 -24.65729 -23.46019 -22.31662 -21.42947 -20.82893 -18.67832 -17.45317 -16.95540 -16.46929 -16.38765 -15.75091 -15.22858 -14.99236 -14.65998 -13.91503 -13.71226 -13.52048 -13.28201 -13.14113 -12.79781 -12.51333 -12.20280 -12.03897 -11.89350 -11.67914 -11.40194 -11.07312 -10.82903 -10.76744 -10.57824 -10.38873 -10.14406 -10.01815 -9.62855 -8.98326 -8.55449 -8.49122 -8.32320 -7.51970 -6.02814 -3.97707 1.47963 1.61643 2.53243 2.84906 3.30200 3.38113 3.45954 3.97466 4.46289 4.60526 4.92722 4.96350 5.09680 5.14850 5.17406 5.28022 5.31892 5.34492 5.50899 5.54957 5.58718 5.75922 5.85699 5.94295 6.02586 6.20068 6.28969 6.49190 6.59919 6.62066 6.70114 6.75299 6.88929 6.98949 7.08252 7.23599 7.69898 7.74063 7.95997 8.16567 8.65045 9.03824 9.59935 11.09911 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.008779 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.818954 B = 3188.646443 C = 3902.355616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.459 3.541 4 O -0.464 6.464 5 C 0.134 3.866 6 H 0.121 0.879 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.137 4.137 10 C -0.117 4.117 11 C -0.129 4.129 12 C -0.048 4.048 13 C -0.124 4.124 14 C 0.069 3.931 15 N -0.499 5.499 16 C 0.132 3.868 17 C -0.504 4.504 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.900 5.900 21 Si 0.867 3.133 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.267 1.267 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.070 0.930 37 H -0.013 1.013 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -17.522 -3.464 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.300 3.700 4 O -0.347 6.347 5 C 0.024 3.976 6 H 0.138 0.862 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.155 4.155 10 C -0.135 4.135 11 C -0.147 4.147 12 C -0.048 4.048 13 C -0.162 4.162 14 C -0.058 4.058 15 N -0.222 5.222 16 C 0.006 3.994 17 C -0.542 4.542 18 H 0.100 0.900 19 C -0.129 4.129 20 N -0.540 5.540 21 Si 0.694 3.306 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.163 0.837 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.005 0.995 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.229 -16.734 -3.771 17.155 hybrid contribution -0.665 -0.803 1.657 1.958 sum -0.893 -17.537 -2.115 17.686 Atomic orbital electron populations 1.23223 0.77311 1.03133 1.02618 1.86517 1.22731 1.33616 1.84931 1.23519 0.91603 0.81299 0.73529 1.90652 1.66553 1.35352 1.42158 1.20330 0.86837 0.91613 0.98822 0.86158 1.20068 0.97829 0.95689 0.98790 1.21707 0.99634 0.93048 0.98286 1.21008 0.97808 0.99706 0.96964 1.21080 0.96753 0.96332 0.99296 1.21080 1.01018 0.94109 0.98496 1.19760 0.94851 0.96061 0.94110 1.21230 0.99673 0.92834 1.02441 1.22094 0.87396 1.02526 0.93802 1.62690 1.05923 1.09746 1.43861 1.20874 0.97594 0.95300 0.85602 1.20987 1.27196 0.96888 1.09142 0.90011 1.24804 0.95919 0.94705 0.97518 1.69877 1.44625 1.10746 1.28711 0.86967 0.82392 0.79493 0.81719 1.20442 1.21126 1.19120 0.92081 0.91947 0.88470 0.83725 0.86436 0.86483 0.86168 0.87927 0.90873 0.88157 0.92249 0.91285 0.99499 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.34 7.06 -39.24 -0.28 -5.61 16 3 C 0.46 8.50 6.80 36.01 0.24 8.75 16 4 O -0.46 -10.28 13.21 -18.75 -0.25 -10.53 16 5 C 0.13 2.40 2.79 -70.20 -0.20 2.20 16 6 H 0.12 1.82 8.14 -51.93 -0.42 1.39 16 7 C -0.12 -2.07 4.92 -104.63 -0.51 -2.58 16 8 C -0.11 -1.61 8.84 -39.48 -0.35 -1.96 16 9 C -0.14 -1.81 10.05 -39.66 -0.40 -2.21 16 10 C -0.12 -1.56 10.05 -39.65 -0.40 -1.96 16 11 C -0.13 -1.94 9.66 -39.49 -0.38 -2.32 16 12 C -0.05 -0.82 5.05 -104.60 -0.53 -1.34 16 13 C -0.12 -2.21 5.14 -27.93 -0.14 -2.35 16 14 C 0.07 1.29 5.52 -3.73 -0.02 1.27 16 15 N -0.50 -10.58 4.82 -230.97 -1.11 -11.70 16 16 C 0.13 3.30 2.57 -4.98 -0.01 3.29 16 17 C -0.50 -14.30 8.35 -34.44 -0.29 -14.59 16 18 H 0.08 2.47 6.74 -52.48 -0.35 2.11 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 21 Si 0.87 22.52 27.37 -169.99 -4.65 17.87 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.27 -6.97 6.70 56.52 0.38 -6.59 16 25 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.15 1.96 5.10 -52.49 -0.27 1.69 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.10 2.18 6.47 -51.93 -0.34 1.84 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 2.03 6.54 -51.93 -0.34 1.69 16 35 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 36 H 0.07 1.90 4.36 -52.16 -0.23 1.67 16 37 H -0.01 -0.32 4.89 -51.93 -0.25 -0.58 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -33.02 298.41 -7.77 -40.79 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.74 Total: 1.96 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.02 Total: -10.37 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.34 Total: -38.60 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.52 Total: -16.14 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.65 Total: 17.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.02 -7.77 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267779713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.143 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds