Wall clock time and date at job start Mon Mar 30 2020 01:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86804 * 120.00330 * 2 1 4 4 H 1.48502 * 109.46831 * 240.00110 * 3 2 1 5 5 H 1.48492 * 109.46750 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46933 * 119.99962 * 3 2 1 7 7 C 1.38951 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00203 * 164.53679 * 7 2 1 9 9 N 1.37100 * 120.00061 * 344.53418 * 7 2 1 10 10 C 1.34774 * 120.00188 * 149.94124 * 9 7 2 11 11 O 1.21295 * 119.99464 * 355.47618 * 10 9 7 12 12 C 1.50696 * 120.00093 * 175.75217 * 10 9 7 13 13 H 1.08997 * 109.46689 * 324.01660 * 12 10 9 14 14 C 1.53117 * 109.46423 * 204.04360 * 12 10 9 15 15 C 1.53354 * 109.51103 * 169.71381 * 14 12 10 16 16 C 1.50832 * 108.38582 * 49.92566 * 15 14 12 17 17 N 1.34325 * 128.03079 * 163.36897 * 16 15 14 18 18 H 0.96996 * 126.09511 * 0.23836 * 17 16 15 19 19 N 1.40300 * 107.81371 * 180.21748 * 17 16 15 20 20 C 1.31072 * 108.26963 * 359.92993 * 19 17 16 21 21 C 1.35749 * 124.11925 * 343.49048 * 16 15 14 22 22 C 1.50833 * 124.11112 * 359.76181 * 21 16 15 23 23 C 1.46501 * 120.00013 * 329.93730 * 9 7 2 24 24 C 1.53005 * 117.49802 * 314.13198 * 23 9 7 25 25 C 1.53003 * 117.49900 * 245.50919 * 23 9 7 26 26 H 0.97000 * 119.99600 * 5.19457 * 1 2 3 27 27 H 1.08996 * 109.46308 * 289.71875 * 14 12 10 28 28 H 1.09004 * 109.46348 * 49.70032 * 14 12 10 29 29 H 1.09001 * 109.66685 * 290.20659 * 15 14 12 30 30 H 1.09005 * 109.69484 * 169.65478 * 15 14 12 31 31 H 1.07993 * 125.96085 * 179.97438 * 20 19 17 32 32 H 1.09005 * 109.68309 * 223.74681 * 22 21 16 33 33 H 1.09005 * 109.68324 * 103.19512 * 22 21 16 34 34 H 1.09001 * 115.54606 * 99.83565 * 23 9 7 35 35 H 1.08996 * 117.50034 * 359.97438 * 24 23 9 36 36 H 1.09004 * 117.49464 * 145.02010 * 24 23 9 37 37 H 1.08998 * 117.49334 * 214.97635 * 25 23 9 38 38 H 1.08994 * 117.49773 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0595 -1.2203 -0.2499 9 7 1.3605 -2.3693 0.3156 10 6 1.7657 -3.5343 -0.2275 11 8 2.6499 -3.5412 -1.0578 12 6 1.1162 -4.8277 0.1924 13 1 0.8729 -4.7842 1.2539 14 6 2.0806 -5.9893 -0.0626 15 6 1.5334 -7.2628 0.5936 16 6 0.0935 -7.4315 0.1773 17 7 -0.6676 -8.5352 0.2588 18 1 -0.3899 -9.3964 0.6082 19 7 -1.9362 -8.2205 -0.2512 20 6 -1.9290 -6.9639 -0.6239 21 6 -0.6633 -6.4432 -0.3642 22 6 -0.1682 -5.0412 -0.6180 23 6 0.2271 -2.3489 1.2437 24 6 0.3842 -1.5397 2.5327 25 6 0.3977 -3.0689 2.5829 26 1 -0.4849 0.8366 -0.0761 27 1 2.1816 -6.1486 -1.1361 28 1 3.0558 -5.7518 0.3627 29 1 1.5938 -7.1717 1.6781 30 1 2.1141 -8.1244 0.2641 31 1 -2.7593 -6.4261 -1.0571 32 1 -0.9246 -4.3221 -0.3034 33 1 0.0420 -4.9127 -1.6798 34 1 -0.7596 -2.3730 0.7813 35 1 1.3309 -1.0230 2.6904 36 1 -0.4994 -1.0313 2.9186 37 1 -0.4771 -3.5664 3.0017 38 1 1.3529 -3.5582 2.7732 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270227115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:28 Heat of formation + Delta-G solvation = 63.999094 kcal Electronic energy + Delta-G solvation = -21844.271346 eV Core-core repulsion = 18689.032443 eV Total energy + Delta-G solvation = -3155.238903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36502 -39.00675 -36.41748 -35.36344 -32.95710 -32.40888 -31.04054 -29.32014 -29.16851 -25.19848 -23.52625 -22.45119 -21.75499 -21.38114 -21.18428 -18.90962 -18.25958 -17.16066 -16.82766 -15.91998 -15.11814 -14.95172 -14.33387 -14.25592 -14.00958 -13.83604 -13.40432 -13.31633 -12.75385 -12.68250 -12.28379 -12.04562 -11.62438 -11.45869 -11.07319 -10.98954 -10.76330 -10.58181 -10.52241 -10.45306 -10.34446 -10.13914 -9.67681 -9.40050 -9.34197 -8.83063 -8.22915 -8.09055 -7.56724 -6.27263 -3.85309 1.97171 2.93049 2.94249 3.20896 3.26760 3.29984 3.92708 4.14841 4.66862 4.68781 4.81028 4.95375 5.03029 5.12098 5.25952 5.51530 5.54933 5.63116 5.76349 5.78098 5.84293 5.91210 5.98635 6.06105 6.19571 6.23938 6.32381 6.40032 6.50040 6.63643 6.70202 6.75046 6.85438 6.91276 7.16391 7.37014 7.62938 7.76926 8.22870 8.55262 9.24873 9.47272 10.06190 10.80057 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.005257 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.464957 B = 5324.865099 C = 5561.168424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.316 4.316 8 H 0.092 0.908 9 N -0.419 5.419 10 C 0.464 3.536 11 O -0.584 6.584 12 C -0.103 4.103 13 H 0.091 0.909 14 C -0.091 4.091 15 C -0.056 4.056 16 C 0.086 3.914 17 N -0.476 5.476 18 H 0.434 0.566 19 N -0.307 5.307 20 C 0.058 3.942 21 C -0.224 4.224 22 C -0.026 4.026 23 C 0.130 3.870 24 C -0.149 4.149 25 C -0.221 4.221 26 H 0.267 0.733 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.182 0.818 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -11.155 4.709 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.160 4.160 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.443 4.443 8 H 0.110 0.890 9 N -0.138 5.138 10 C 0.252 3.748 11 O -0.468 6.468 12 C -0.124 4.124 13 H 0.109 0.891 14 C -0.130 4.130 15 C -0.095 4.095 16 C -0.043 4.043 17 N -0.183 5.183 18 H 0.277 0.723 19 N -0.130 5.130 20 C -0.127 4.127 21 C -0.235 4.235 22 C -0.065 4.065 23 C 0.024 3.976 24 C -0.187 4.187 25 C -0.259 4.259 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.199 0.801 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.582 -12.017 4.438 13.068 hybrid contribution 0.741 1.259 0.175 1.471 sum -1.841 -10.758 4.613 11.849 Atomic orbital electron populations 1.69848 1.05910 1.27661 1.47084 1.25258 0.95268 0.99334 0.96096 0.86173 0.79217 0.81320 0.79061 1.19888 1.21007 1.19986 1.19390 0.94634 0.82940 1.47336 0.89033 1.43046 1.27870 1.05946 1.36905 1.19976 0.86349 0.84798 0.83634 1.90516 1.34403 1.86905 1.35025 1.21357 0.95514 0.93935 1.01630 0.89131 1.21326 0.98389 0.91582 1.01697 1.20432 0.88085 0.99870 1.01144 1.21020 0.95130 0.87618 1.00543 1.45974 1.09348 1.11520 1.51482 0.72330 1.77426 0.99130 1.16456 1.19959 1.23612 0.97945 0.91826 0.99320 1.20027 0.94141 0.97753 1.11570 1.19851 0.95675 0.90848 1.00111 1.21150 0.91552 1.01475 0.83381 1.22766 1.02507 0.91719 1.01695 1.23491 1.01960 0.96317 1.04176 0.92249 0.90850 0.90770 0.89875 0.90392 0.80091 0.90493 0.90980 0.87670 0.89013 0.89773 0.89499 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.55 11.41 55.50 0.63 -21.92 16 2 C 0.05 1.18 4.63 -17.47 -0.08 1.10 16 3 Si 0.92 20.42 29.58 -169.99 -5.03 15.39 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.32 -8.55 8.62 -14.93 -0.13 -8.68 16 8 H 0.09 2.62 7.63 -52.48 -0.40 2.22 16 9 N -0.42 -10.29 2.89 -107.72 -0.31 -10.60 16 10 C 0.46 10.90 6.65 -10.99 -0.07 10.82 16 11 O -0.58 -15.84 16.07 5.54 0.09 -15.75 16 12 C -0.10 -1.83 1.79 -91.53 -0.16 -1.99 16 13 H 0.09 1.52 5.00 -51.93 -0.26 1.26 16 14 C -0.09 -1.41 4.59 -26.49 -0.12 -1.53 16 15 C -0.06 -0.65 6.30 -27.64 -0.17 -0.83 16 16 C 0.09 1.15 7.08 -82.33 -0.58 0.57 16 17 N -0.48 -5.80 7.34 33.48 0.25 -5.56 16 18 H 0.43 3.77 8.96 -182.45 -1.64 2.13 16 19 N -0.31 -4.42 12.71 30.54 0.39 -4.03 16 20 C 0.06 0.82 12.00 -17.48 -0.21 0.61 16 21 C -0.22 -3.36 5.91 -105.05 -0.62 -3.98 16 22 C -0.03 -0.44 5.48 -27.63 -0.15 -0.59 16 23 C 0.13 2.76 3.13 -67.93 -0.21 2.54 16 24 C -0.15 -2.95 8.90 -26.73 -0.24 -3.19 16 25 C -0.22 -3.83 8.30 -26.73 -0.22 -4.05 16 26 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 27 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 28 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.08 1.31 7.20 -51.93 -0.37 0.94 16 33 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 34 H 0.11 2.32 7.59 -51.93 -0.39 1.92 16 35 H 0.09 1.96 7.92 -51.93 -0.41 1.55 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.47 7.68 -51.93 -0.40 1.07 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -31.30 309.96 -8.68 -39.98 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.39 Total: 7.01 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.98 Total: -9.19 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.96 Total: -42.11 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.09 Total: -15.75 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.30 -8.68 -39.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270227115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.982 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds