Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 120.00310 * 2 1 4 4 H 1.48499 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47158 * 300.00284 * 3 2 1 6 6 H 1.48504 * 109.46614 * 60.00028 * 3 2 1 7 7 C 1.38954 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00093 * 191.51837 * 7 2 1 9 9 N 1.37096 * 119.99932 * 11.52320 * 7 2 1 10 10 C 1.34781 * 119.99662 * 208.91558 * 9 7 2 11 11 O 1.21287 * 120.00228 * 4.23080 * 10 9 7 12 12 C 1.50700 * 119.99579 * 184.22318 * 10 9 7 13 13 H 1.08994 * 109.47001 * 36.79478 * 12 10 9 14 14 C 1.53112 * 109.46311 * 156.78321 * 12 10 9 15 15 C 1.53363 * 109.51215 * 190.28445 * 14 12 10 16 16 C 1.50821 * 108.38475 * 310.07487 * 15 14 12 17 17 N 1.34323 * 128.03442 * 196.52143 * 16 15 14 18 18 H 0.97001 * 126.09258 * 359.91616 * 17 16 15 19 19 N 1.40303 * 107.81675 * 179.91610 * 17 16 15 20 20 C 1.31060 * 108.27157 * 0.05695 * 19 17 16 21 21 C 1.35750 * 124.12113 * 16.52212 * 16 15 14 22 22 C 1.50832 * 124.11269 * 0.20177 * 21 16 15 23 23 C 1.46499 * 120.00421 * 28.91503 * 9 7 2 24 24 C 1.53000 * 117.49657 * 44.37975 * 23 9 7 25 25 C 1.52998 * 117.49876 * 113.04161 * 23 9 7 26 26 H 0.97001 * 119.99760 * 4.97000 * 1 2 3 27 27 H 1.08998 * 109.46690 * 310.29918 * 14 12 10 28 28 H 1.09001 * 109.46383 * 70.28247 * 14 12 10 29 29 H 1.09002 * 109.67763 * 69.79305 * 15 14 12 30 30 H 1.08997 * 109.68373 * 190.35065 * 15 14 12 31 31 H 1.07997 * 125.96593 * 179.97438 * 20 19 17 32 32 H 1.09005 * 109.68764 * 256.84599 * 22 21 16 33 33 H 1.08992 * 109.67955 * 136.28483 * 22 21 16 34 34 H 1.08995 * 115.54812 * 258.71619 * 23 9 7 35 35 H 1.08999 * 117.50326 * 215.00389 * 24 23 9 36 36 H 1.09002 * 117.49608 * 0.02768 * 24 23 9 37 37 H 1.09003 * 117.50125 * 359.97438 * 25 23 9 38 38 H 1.08995 * 117.50191 * 144.97829 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0726 -1.2130 0.1862 9 7 1.3440 -2.3786 -0.2382 10 6 1.7955 -3.5289 0.2997 11 8 2.7439 -3.5137 1.0556 12 6 1.1218 -4.8340 -0.0378 13 1 0.8103 -4.8225 -1.0822 14 6 2.1021 -5.9880 0.1896 15 6 1.5153 -7.2805 -0.3909 16 6 0.1055 -7.4354 0.1223 17 7 -0.6587 -8.5400 0.1219 18 1 -0.4029 -9.4117 -0.2181 19 7 -1.8929 -8.2084 0.7010 20 6 -1.8629 -6.9414 1.0349 21 6 -0.6162 -6.4305 0.6810 22 6 -0.1073 -5.0219 0.8600 23 6 0.1429 -2.3841 -1.0770 24 6 0.1848 -1.5772 -2.3762 25 6 0.2245 -3.1067 -2.4230 26 1 -0.4850 0.8369 -0.0728 27 1 3.0475 -5.7643 -0.3047 28 1 2.2723 -6.1146 1.2587 29 1 1.5053 -7.2227 -1.4794 30 1 2.1171 -8.1320 -0.0734 31 1 -2.6648 -6.3895 1.5025 32 1 0.1711 -4.8616 1.9016 33 1 -0.8832 -4.3121 0.5734 34 1 -0.8050 -2.4250 -0.5404 35 1 -0.7354 -1.0873 -2.6944 36 1 1.1063 -1.0426 -2.6071 37 1 1.1720 -3.5777 -2.6848 38 1 -0.6695 -3.6234 -2.7719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270227117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = 63.667991 kcal Electronic energy + Delta-G solvation = -21849.768452 eV Core-core repulsion = 18694.515192 eV Total energy + Delta-G solvation = -3155.253261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36847 -39.01263 -36.42841 -35.36583 -32.92217 -32.41430 -31.06530 -29.32335 -29.16982 -25.19493 -23.53358 -22.44589 -21.75155 -21.35239 -21.18033 -18.91464 -18.26929 -17.16435 -16.82338 -15.94448 -15.08500 -14.95952 -14.33922 -14.26111 -13.99462 -13.83634 -13.41147 -13.30810 -12.75597 -12.68829 -12.28846 -12.03617 -11.62266 -11.45878 -11.10276 -10.97275 -10.73364 -10.58425 -10.51666 -10.45873 -10.27309 -10.14351 -9.70972 -9.39232 -9.32038 -8.80215 -8.24310 -8.09450 -7.60721 -6.24551 -3.87562 1.96946 2.92785 2.93915 3.17835 3.28840 3.34220 3.91857 4.15001 4.66932 4.71627 4.81319 4.95309 5.03148 5.13741 5.26447 5.51630 5.54305 5.62718 5.76706 5.81021 5.84786 5.91847 6.00194 6.08140 6.19137 6.26622 6.31820 6.40061 6.49823 6.63178 6.73587 6.75941 6.85025 6.94535 7.18535 7.36760 7.60863 7.76669 8.21251 8.54472 9.24328 9.46769 10.04558 10.80163 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029144 B = 0.005266 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.520797 B = 5315.944035 C = 5570.461229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.309 4.309 8 H 0.093 0.907 9 N -0.421 5.421 10 C 0.465 3.535 11 O -0.585 6.585 12 C -0.102 4.102 13 H 0.090 0.910 14 C -0.091 4.091 15 C -0.056 4.056 16 C 0.086 3.914 17 N -0.476 5.476 18 H 0.434 0.566 19 N -0.307 5.307 20 C 0.058 3.942 21 C -0.224 4.224 22 C -0.026 4.026 23 C 0.133 3.867 24 C -0.142 4.142 25 C -0.225 4.225 26 H 0.265 0.735 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.182 0.818 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -11.344 -4.158 12.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.163 4.163 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.437 4.437 8 H 0.111 0.889 9 N -0.140 5.140 10 C 0.253 3.747 11 O -0.469 6.469 12 C -0.123 4.123 13 H 0.108 0.892 14 C -0.130 4.130 15 C -0.095 4.095 16 C -0.043 4.043 17 N -0.183 5.183 18 H 0.277 0.723 19 N -0.130 5.130 20 C -0.127 4.127 21 C -0.235 4.235 22 C -0.065 4.065 23 C 0.027 3.973 24 C -0.180 4.180 25 C -0.263 4.263 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.199 0.801 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.811 -12.200 -3.714 13.059 hybrid contribution 0.699 1.258 -0.293 1.468 sum -2.112 -10.942 -4.007 11.843 Atomic orbital electron populations 1.69929 1.05775 1.27444 1.47423 1.25239 0.95301 0.99319 0.96461 0.86057 0.80028 0.82084 0.77719 1.19370 1.20758 1.20812 1.19551 0.93220 0.82790 1.48138 0.88909 1.43077 1.23587 1.06307 1.40988 1.19981 0.86672 0.84951 0.83075 1.90515 1.30969 1.86864 1.38508 1.21335 0.95685 0.93895 1.01419 0.89173 1.21325 0.98082 0.91382 1.02188 1.20432 0.88582 0.99841 1.00684 1.21018 0.95184 0.87526 1.00568 1.45975 1.11363 1.10825 1.50160 0.72325 1.77422 1.00787 1.16009 1.18743 1.23612 0.97839 0.91802 0.99445 1.20025 0.95088 0.97439 1.10964 1.19858 0.96073 0.90810 0.99786 1.21070 0.90255 1.01458 0.84490 1.22726 1.02299 0.91418 1.01521 1.23534 1.01773 0.96519 1.04464 0.92490 0.90738 0.90855 0.89863 0.90385 0.80088 0.90990 0.90470 0.87827 0.89844 0.89099 0.89742 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.43 10.92 55.50 0.61 -21.83 16 2 C 0.04 1.07 4.60 -17.47 -0.08 0.99 16 3 Si 0.91 20.44 29.57 -169.99 -5.03 15.41 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.31 -8.37 8.66 -14.93 -0.13 -8.50 16 8 H 0.09 2.66 7.58 -52.48 -0.40 2.26 16 9 N -0.42 -10.33 2.91 -107.73 -0.31 -10.64 16 10 C 0.46 10.89 6.67 -10.98 -0.07 10.81 16 11 O -0.58 -15.78 16.03 5.55 0.09 -15.69 16 12 C -0.10 -1.81 1.79 -91.52 -0.16 -1.97 16 13 H 0.09 1.52 5.19 -51.93 -0.27 1.25 16 14 C -0.09 -1.40 4.57 -26.49 -0.12 -1.52 16 15 C -0.06 -0.65 6.30 -27.64 -0.17 -0.83 16 16 C 0.09 1.15 7.08 -82.33 -0.58 0.57 16 17 N -0.48 -5.79 7.34 33.48 0.25 -5.55 16 18 H 0.43 3.76 8.96 -182.44 -1.64 2.12 16 19 N -0.31 -4.41 12.71 30.54 0.39 -4.02 16 20 C 0.06 0.82 12.00 -17.48 -0.21 0.61 16 21 C -0.22 -3.35 5.91 -105.05 -0.62 -3.97 16 22 C -0.03 -0.44 5.47 -27.63 -0.15 -0.60 16 23 C 0.13 2.82 3.08 -67.93 -0.21 2.61 16 24 C -0.14 -2.83 8.55 -26.69 -0.23 -3.06 16 25 C -0.22 -3.91 8.36 -26.69 -0.22 -4.14 16 26 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 27 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 28 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 33 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 34 H 0.10 2.28 7.48 -51.93 -0.39 1.89 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.96 7.77 -51.93 -0.40 1.56 16 37 H 0.08 1.46 7.77 -51.93 -0.40 1.06 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -31.21 308.94 -8.70 -39.91 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.38 Total: 6.74 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.97 Total: -9.00 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.93 Total: -42.03 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.69 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.21 -8.70 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270227117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.580 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds