Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 120.00310 * 2 1 4 4 H 1.48499 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47158 * 300.00284 * 3 2 1 6 6 H 1.48504 * 109.46614 * 60.00028 * 3 2 1 7 7 C 1.38954 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00093 * 191.51837 * 7 2 1 9 9 N 1.37096 * 119.99932 * 11.52320 * 7 2 1 10 10 C 1.34781 * 119.99662 * 208.91558 * 9 7 2 11 11 O 1.21287 * 120.00228 * 4.23080 * 10 9 7 12 12 C 1.50700 * 119.99579 * 184.22318 * 10 9 7 13 13 H 1.08994 * 109.47001 * 36.79478 * 12 10 9 14 14 C 1.53112 * 109.46311 * 156.78321 * 12 10 9 15 15 C 1.53363 * 109.51215 * 190.28445 * 14 12 10 16 16 C 1.50821 * 108.38475 * 310.07487 * 15 14 12 17 17 N 1.34323 * 128.03442 * 196.52143 * 16 15 14 18 18 H 0.97001 * 126.09258 * 359.91616 * 17 16 15 19 19 N 1.40303 * 107.81675 * 179.91610 * 17 16 15 20 20 C 1.31060 * 108.27157 * 0.05695 * 19 17 16 21 21 C 1.35750 * 124.12113 * 16.52212 * 16 15 14 22 22 C 1.50832 * 124.11269 * 0.20177 * 21 16 15 23 23 C 1.46499 * 120.00421 * 28.91503 * 9 7 2 24 24 C 1.53000 * 117.49657 * 44.37975 * 23 9 7 25 25 C 1.52998 * 117.49876 * 113.04161 * 23 9 7 26 26 H 0.97001 * 119.99760 * 4.97000 * 1 2 3 27 27 H 1.08998 * 109.46690 * 310.29918 * 14 12 10 28 28 H 1.09001 * 109.46383 * 70.28247 * 14 12 10 29 29 H 1.09002 * 109.67763 * 69.79305 * 15 14 12 30 30 H 1.08997 * 109.68373 * 190.35065 * 15 14 12 31 31 H 1.07997 * 125.96593 * 179.97438 * 20 19 17 32 32 H 1.09005 * 109.68764 * 256.84599 * 22 21 16 33 33 H 1.08992 * 109.67955 * 136.28483 * 22 21 16 34 34 H 1.08995 * 115.54812 * 258.71619 * 23 9 7 35 35 H 1.08999 * 117.50326 * 215.00389 * 24 23 9 36 36 H 1.09002 * 117.49608 * 0.02768 * 24 23 9 37 37 H 1.09003 * 117.50125 * 359.97438 * 25 23 9 38 38 H 1.08995 * 117.50191 * 144.97829 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0726 -1.2130 0.1862 9 7 1.3440 -2.3786 -0.2382 10 6 1.7955 -3.5289 0.2997 11 8 2.7439 -3.5137 1.0556 12 6 1.1218 -4.8340 -0.0378 13 1 0.8103 -4.8225 -1.0822 14 6 2.1021 -5.9880 0.1896 15 6 1.5153 -7.2805 -0.3909 16 6 0.1055 -7.4354 0.1223 17 7 -0.6587 -8.5400 0.1219 18 1 -0.4029 -9.4117 -0.2181 19 7 -1.8929 -8.2084 0.7010 20 6 -1.8629 -6.9414 1.0349 21 6 -0.6162 -6.4305 0.6810 22 6 -0.1073 -5.0219 0.8600 23 6 0.1429 -2.3841 -1.0770 24 6 0.1848 -1.5772 -2.3762 25 6 0.2245 -3.1067 -2.4230 26 1 -0.4850 0.8369 -0.0728 27 1 3.0475 -5.7643 -0.3047 28 1 2.2723 -6.1146 1.2587 29 1 1.5053 -7.2227 -1.4794 30 1 2.1171 -8.1320 -0.0734 31 1 -2.6648 -6.3895 1.5025 32 1 0.1711 -4.8616 1.9016 33 1 -0.8832 -4.3121 0.5734 34 1 -0.8050 -2.4250 -0.5404 35 1 -0.7354 -1.0873 -2.6944 36 1 1.1063 -1.0426 -2.6071 37 1 1.1720 -3.5777 -2.6848 38 1 -0.6695 -3.6234 -2.7719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270227117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = 44.099223 kcal Electronic energy + Delta-G solvation = -21850.617018 eV Core-core repulsion = 18694.515192 eV Total energy + Delta-G solvation = -3156.101826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.45803 -40.72068 -38.04828 -36.84859 -34.77993 -33.54083 -32.93827 -30.46711 -30.44713 -27.07262 -24.83556 -23.81907 -22.99333 -22.92720 -22.57555 -20.46006 -19.57247 -18.69626 -18.25504 -17.62583 -16.91918 -16.27858 -15.83854 -15.79227 -15.36757 -15.15647 -14.94597 -14.66106 -14.14138 -13.89312 -13.75367 -13.59676 -13.20521 -12.89058 -12.83164 -12.54843 -12.37780 -12.21766 -12.09862 -11.91272 -11.66343 -11.45650 -11.38061 -10.97564 -10.59927 -10.39871 -10.09531 -9.54338 -9.21524 -8.22116 -5.93081 0.93780 1.37286 1.43016 1.54358 1.83163 1.98165 2.12212 2.31099 2.99624 3.10210 3.29065 3.70163 3.77989 3.94563 3.98739 4.19558 4.26460 4.29049 4.37897 4.51519 4.60286 4.65128 4.69604 4.83321 4.86744 4.95411 4.97924 5.02612 5.17601 5.26191 5.39261 5.42216 5.44576 5.49833 5.55482 5.71787 6.20634 6.47168 6.61337 6.75254 7.27245 7.57342 8.15112 8.80107 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029144 B = 0.005266 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.520797 B = 5315.944035 C = 5570.461229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.014 3.986 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.281 1.281 7 C -0.343 4.343 8 H 0.062 0.938 9 N -0.432 5.432 10 C 0.452 3.548 11 O -0.633 6.633 12 C -0.088 4.088 13 H 0.106 0.894 14 C -0.090 4.090 15 C -0.045 4.045 16 C 0.098 3.902 17 N -0.460 5.460 18 H 0.451 0.549 19 N -0.324 5.324 20 C 0.055 3.945 21 C -0.251 4.251 22 C -0.016 4.016 23 C 0.109 3.891 24 C -0.148 4.148 25 C -0.181 4.181 26 H 0.270 0.730 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.198 0.802 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 -12.929 -5.909 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.189 4.189 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.207 1.207 7 C -0.471 4.471 8 H 0.080 0.920 9 N -0.150 5.150 10 C 0.242 3.758 11 O -0.520 6.520 12 C -0.109 4.109 13 H 0.124 0.876 14 C -0.128 4.128 15 C -0.084 4.084 16 C -0.033 4.033 17 N -0.170 5.170 18 H 0.297 0.703 19 N -0.147 5.147 20 C -0.130 4.130 21 C -0.262 4.262 22 C -0.055 4.055 23 C 0.004 3.996 24 C -0.186 4.186 25 C -0.219 4.219 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.215 0.785 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.682 -13.815 -5.495 15.317 hybrid contribution 0.971 1.759 0.300 2.031 sum -2.711 -12.056 -5.195 13.405 Atomic orbital electron populations 1.69991 1.06395 1.28342 1.46860 1.25823 0.96102 1.01416 0.95604 0.85224 0.78453 0.78636 0.78167 1.20130 1.18997 1.20698 1.19445 0.92449 0.84788 1.50384 0.91979 1.43286 1.24166 1.05931 1.41624 1.21041 0.86067 0.86639 0.82022 1.90467 1.33153 1.87879 1.40523 1.21273 0.96059 0.91390 1.02200 0.87624 1.21287 0.97618 0.92539 1.01398 1.20438 0.87532 0.98484 1.01913 1.21184 0.95574 0.87269 0.99227 1.45956 1.10495 1.11337 1.49179 0.70273 1.77401 1.01870 1.15999 1.19454 1.23896 0.98051 0.91858 0.99191 1.19882 0.96202 0.96693 1.13423 1.19627 0.95388 0.92467 0.97986 1.21040 0.88507 1.04917 0.85152 1.22685 1.01789 0.93319 1.00804 1.23570 1.03592 0.94863 0.99890 0.92017 0.91142 0.92755 0.87223 0.87123 0.78511 0.93557 0.91144 0.88923 0.88722 0.91258 0.89217 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.76 10.92 21.66 0.24 -45.52 16 2 C 0.01 0.75 4.60 84.93 0.39 1.14 16 3 Si 0.97 42.50 29.57 68.60 2.03 44.53 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.34 -19.31 8.66 84.04 0.73 -18.59 16 8 H 0.06 3.79 7.58 -2.91 -0.02 3.77 16 9 N -0.43 -21.84 2.91 -613.14 -1.78 -23.62 16 10 C 0.45 21.90 6.67 87.66 0.58 22.48 16 11 O -0.63 -35.96 16.03 -3.05 -0.05 -36.01 16 12 C -0.09 -3.09 1.79 -11.38 -0.02 -3.11 16 13 H 0.11 3.34 5.19 -2.39 -0.01 3.33 16 14 C -0.09 -2.66 4.57 30.75 0.14 -2.52 16 15 C -0.05 -0.88 6.30 30.01 0.19 -0.69 16 16 C 0.10 2.32 7.08 41.64 0.29 2.61 16 17 N -0.46 -9.66 7.34 -47.99 -0.35 -10.01 16 18 H 0.45 6.03 8.96 -213.19 -1.91 4.12 16 19 N -0.32 -8.52 12.71 -57.28 -0.73 -9.25 16 20 C 0.05 1.45 12.00 85.07 1.02 2.47 16 21 C -0.25 -7.11 5.91 -20.14 -0.12 -7.23 16 22 C -0.02 -0.53 5.47 30.01 0.16 -0.36 16 23 C 0.11 4.59 3.08 44.99 0.14 4.73 16 24 C -0.15 -5.78 8.55 30.62 0.26 -5.52 16 25 C -0.18 -5.87 8.36 30.62 0.26 -5.61 16 26 H 0.27 13.23 8.32 -92.71 -0.77 12.46 16 27 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 28 H 0.05 1.80 8.11 -2.39 -0.02 1.78 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.20 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.05 1.76 8.12 -2.38 -0.02 1.74 16 33 H 0.07 2.42 7.05 -2.39 -0.02 2.40 16 34 H 0.09 4.10 7.48 -2.39 -0.02 4.08 16 35 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.07 3.00 7.77 -2.39 -0.02 2.98 16 37 H 0.09 2.85 7.77 -2.39 -0.02 2.84 16 38 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -70.36 308.94 2.56 -67.80 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.83 Total: 22.27 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.03 Total: -10.20 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -2.63 Total: -88.40 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.05 Total: -36.01 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -70.36 2.56 -67.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270227117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.902 kcal (2) G-P(sol) polarization free energy of solvation -70.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds