Wall clock time and date at job start Mon Mar 30 2020 01:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99881 * 2 1 4 4 H 1.09001 * 110.91548 * 32.45007 * 3 2 1 5 5 C 1.55163 * 111.00151 * 156.34795 * 3 2 1 6 6 C 1.54336 * 103.01907 * 153.38303 * 5 3 2 7 7 N 1.47024 * 107.26472 * 338.14258 * 6 5 3 8 8 C 1.34781 * 125.64867 * 178.84664 * 7 6 5 9 9 O 1.21585 * 119.99907 * 185.31980 * 8 7 6 10 10 C 1.47636 * 119.99757 * 5.32464 * 8 7 6 11 11 C 1.40011 * 119.89852 * 353.01545 * 10 8 7 12 12 C 1.36321 * 120.11382 * 179.97438 * 11 10 8 13 13 C 1.40890 * 119.88360 * 0.27535 * 12 11 10 14 14 C 1.41111 * 120.10019 * 179.74823 * 13 12 11 15 15 H 1.08001 * 120.00240 * 149.89333 * 14 13 12 16 16 C 1.40224 * 120.00004 * 329.88961 * 14 13 12 17 17 N 1.30652 * 120.00203 * 169.12846 * 16 14 13 18 18 Si 1.86798 * 120.00131 * 349.13337 * 16 14 13 19 19 H 1.48500 * 109.47328 * 93.10501 * 18 16 14 20 20 H 1.48498 * 109.47486 * 213.10811 * 18 16 14 21 21 H 1.48496 * 109.47065 * 333.10758 * 18 16 14 22 22 C 1.40888 * 119.79695 * 359.51957 * 13 12 11 23 23 C 1.36317 * 119.88945 * 0.45895 * 22 13 12 24 24 C 1.47424 * 108.70610 * 358.58298 * 7 6 5 25 25 H 1.09000 * 109.47116 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.47315 * 59.99656 * 1 2 3 27 27 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.08995 * 110.72326 * 271.94202 * 5 3 2 29 29 H 1.08999 * 110.71980 * 35.03979 * 5 3 2 30 30 H 1.09000 * 109.98996 * 218.66961 * 6 5 3 31 31 H 1.08997 * 109.77708 * 97.49391 * 6 5 3 32 32 H 1.07997 * 119.94400 * 0.02562 * 11 10 8 33 33 H 1.07993 * 120.05942 * 180.02562 * 12 11 10 34 34 H 0.97002 * 120.00099 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.05312 * 180.22599 * 22 13 12 36 36 H 1.08002 * 119.94484 * 179.79200 * 23 22 13 37 37 H 1.09003 * 110.36991 * 143.18868 * 24 7 6 38 38 H 1.08994 * 110.37014 * 265.40794 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3835 2.0104 0.5463 5 6 3.4485 1.2738 0.5811 6 6 4.1250 2.4828 -0.0990 7 7 3.3611 2.7807 -1.3194 8 6 3.6194 3.7828 -2.1829 9 8 2.8629 3.9962 -3.1105 10 6 4.8211 4.6213 -2.0023 11 6 5.6111 4.4712 -0.8562 12 6 6.7219 5.2428 -0.6852 13 6 7.0711 6.1965 -1.6617 14 6 8.2170 7.0013 -1.4868 15 1 8.7663 7.3531 -2.3476 16 6 8.6424 7.3444 -0.1955 17 7 9.8098 7.9040 -0.0194 18 14 7.5402 7.0012 1.2731 19 1 7.8841 5.6775 1.8516 20 1 7.7392 8.0565 2.2988 21 1 6.1209 6.9969 0.8364 22 6 6.2755 6.3410 -2.8154 23 6 5.1669 5.5645 -2.9776 24 6 2.2696 1.7978 -1.4457 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.4299 1.3981 1.6638 29 1 3.9539 0.3471 0.3094 30 1 5.1550 2.2369 -0.3572 31 1 4.1035 3.3424 0.5708 32 1 5.3405 3.7424 -0.1066 33 1 7.3308 5.1260 0.1990 34 1 10.1043 8.1410 0.8740 35 1 6.5415 7.0683 -3.5683 36 1 4.5545 5.6768 -3.8601 37 1 1.3760 2.2730 -1.8505 38 1 2.5781 0.9678 -2.0813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270370380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:21 Heat of formation + Delta-G solvation = -35.180029 kcal Electronic energy + Delta-G solvation = -20947.857589 eV Core-core repulsion = 17756.025206 eV Total energy + Delta-G solvation = -3191.832384 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.08979 -38.41617 -37.28714 -36.17511 -33.85762 -31.47999 -30.52959 -30.19978 -28.56408 -26.88698 -25.74152 -23.62278 -22.07982 -21.17668 -20.74115 -19.45135 -17.63413 -17.26147 -16.89864 -15.84292 -15.51498 -15.30952 -14.90563 -14.78431 -14.07605 -13.90650 -13.64679 -13.42578 -13.03145 -12.89644 -12.64739 -12.47401 -12.23863 -11.99254 -11.88325 -11.58160 -11.33506 -10.98618 -10.89522 -10.69374 -10.37574 -10.09575 -9.90362 -9.70613 -9.26545 -9.13751 -8.40134 -7.93635 -7.74606 -7.19563 -4.74539 1.98578 2.65644 2.92183 3.08180 3.10702 3.15941 3.59607 3.71922 3.79670 4.35131 4.43631 4.53378 4.79464 5.04063 5.09622 5.12565 5.24051 5.28957 5.42937 5.46235 5.61180 5.67607 5.76617 5.84175 5.91125 5.94400 5.98403 6.37648 6.52250 6.62349 6.71052 6.93396 6.96146 7.24546 7.34942 7.50511 7.66814 7.91427 7.97015 8.10102 8.43535 8.53495 8.83086 9.80448 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.004577 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.122975 B = 6115.476912 C = 6908.676801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.073 3.927 4 H 0.078 0.922 5 C -0.131 4.131 6 C 0.099 3.901 7 N -0.624 5.624 8 C 0.589 3.411 9 O -0.568 6.568 10 C -0.279 4.279 11 C -0.074 4.074 12 C -0.249 4.249 13 C 0.106 3.894 14 C -0.422 4.422 15 H 0.096 0.904 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.920 3.080 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.238 1.238 22 C -0.220 4.220 23 C -0.018 4.018 24 C 0.089 3.911 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.291 0.709 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 -11.014 5.631 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.014 3.986 4 H 0.096 0.904 5 C -0.169 4.169 6 C -0.024 4.024 7 N -0.360 5.360 8 C 0.386 3.614 9 O -0.449 6.449 10 C -0.283 4.283 11 C -0.092 4.092 12 C -0.268 4.268 13 C 0.103 3.897 14 C -0.449 4.449 15 H 0.114 0.886 16 C -0.143 4.143 17 N -0.415 5.415 18 Si 0.747 3.253 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.161 1.161 22 C -0.239 4.239 23 C -0.037 4.037 24 C -0.035 4.035 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.148 0.852 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.202 -10.857 5.199 16.443 hybrid contribution -0.348 0.163 0.710 0.808 sum -11.550 -10.694 5.909 16.813 Atomic orbital electron populations 1.22823 0.80871 1.02818 1.00261 1.87907 1.19871 1.26737 1.94837 1.23302 0.95007 0.84824 0.95439 0.90377 1.22832 0.94019 0.99344 1.00707 1.22512 0.96470 0.96728 0.86717 1.48133 1.31539 1.30960 1.25395 1.18303 0.85282 0.77969 0.79855 1.90658 1.50379 1.70935 1.32928 1.18816 1.00493 1.07791 1.01195 1.21758 0.93627 0.97638 0.96186 1.20697 1.01404 1.02321 1.02398 1.17921 0.90833 0.89733 0.91258 1.19792 1.06196 1.24524 0.94408 0.88625 1.26376 0.94704 0.92012 1.01216 1.69562 1.17218 1.28667 1.26080 0.86195 0.83049 0.77472 0.78618 1.19387 1.21883 1.16149 1.20731 0.97653 1.04310 1.01216 1.20450 0.95098 0.92094 0.96049 1.22508 0.91643 0.92370 0.96963 0.93900 0.93765 0.89510 0.89489 0.89405 0.89719 0.90178 0.85215 0.88065 0.89841 0.87592 0.87598 0.90630 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.38 -4.13 10.51 -35.23 -0.37 -4.50 16 3 C 0.07 0.81 3.49 -24.58 -0.09 0.73 16 4 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 5 C -0.13 -1.36 6.68 -24.89 -0.17 -1.53 16 6 C 0.10 1.31 4.86 -3.06 -0.01 1.29 16 7 N -0.62 -10.36 3.33 -177.84 -0.59 -10.95 16 8 C 0.59 12.26 7.80 -12.42 -0.10 12.16 16 9 O -0.57 -13.29 16.57 5.29 0.09 -13.20 16 10 C -0.28 -6.08 5.89 -104.73 -0.62 -6.69 16 11 C -0.07 -1.53 8.53 -39.61 -0.34 -1.86 16 12 C -0.25 -5.65 6.84 -39.27 -0.27 -5.91 16 13 C 0.11 2.59 5.18 -106.80 -0.55 2.03 16 14 C -0.42 -10.80 9.61 -37.75 -0.36 -11.16 16 15 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.08 1.93 5.49 -17.31 -0.09 1.83 16 17 N -0.79 -19.82 13.92 55.56 0.77 -19.05 16 18 Si 0.92 19.45 24.35 -169.99 -4.14 15.31 16 19 H -0.27 -5.37 6.72 56.52 0.38 -4.99 16 20 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.24 -5.20 6.50 56.52 0.37 -4.83 16 22 C -0.22 -5.08 9.73 -39.27 -0.38 -5.46 16 23 C -0.02 -0.40 9.52 -39.61 -0.38 -0.77 16 24 C 0.09 1.24 6.67 -2.53 -0.02 1.23 16 25 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.13 6.76 -51.93 -0.35 0.78 16 31 H 0.08 1.04 6.70 -51.93 -0.35 0.69 16 32 H 0.13 2.20 2.69 -60.40 -0.16 2.04 16 33 H 0.10 2.22 4.16 -52.49 -0.22 2.01 16 34 H 0.29 6.53 8.29 -40.82 -0.34 6.19 16 35 H 0.11 2.30 8.06 -52.48 -0.42 1.87 16 36 H 0.11 2.29 7.65 -52.49 -0.40 1.89 16 37 H 0.08 1.10 7.99 -51.93 -0.41 0.68 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -29.23 307.28 -6.76 -35.99 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.88 Total: 4.57 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.27 Total: -12.79 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.18 Total: -30.00 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.28 Total: -17.70 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.14 Total: 15.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.23 -6.76 -35.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270370380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.812 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds