Wall clock time and date at job start Mon Mar 30 2020 01:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99881 * 2 1 4 4 H 1.09001 * 110.91548 * 32.45007 * 3 2 1 5 5 C 1.55163 * 111.00151 * 156.34795 * 3 2 1 6 6 C 1.54336 * 103.01907 * 153.38303 * 5 3 2 7 7 N 1.47024 * 107.26472 * 338.14258 * 6 5 3 8 8 C 1.34781 * 125.64867 * 178.84664 * 7 6 5 9 9 O 1.21585 * 119.99907 * 185.31980 * 8 7 6 10 10 C 1.47636 * 119.99757 * 5.32464 * 8 7 6 11 11 C 1.40011 * 119.89852 * 353.01545 * 10 8 7 12 12 C 1.36321 * 120.11382 * 179.97438 * 11 10 8 13 13 C 1.40890 * 119.88360 * 0.27535 * 12 11 10 14 14 C 1.41111 * 120.10019 * 179.74823 * 13 12 11 15 15 H 1.08001 * 120.00240 * 149.89333 * 14 13 12 16 16 C 1.40224 * 120.00004 * 329.88961 * 14 13 12 17 17 N 1.30652 * 120.00203 * 169.12846 * 16 14 13 18 18 Si 1.86798 * 120.00131 * 349.13337 * 16 14 13 19 19 H 1.48500 * 109.47328 * 93.10501 * 18 16 14 20 20 H 1.48498 * 109.47486 * 213.10811 * 18 16 14 21 21 H 1.48496 * 109.47065 * 333.10758 * 18 16 14 22 22 C 1.40888 * 119.79695 * 359.51957 * 13 12 11 23 23 C 1.36317 * 119.88945 * 0.45895 * 22 13 12 24 24 C 1.47424 * 108.70610 * 358.58298 * 7 6 5 25 25 H 1.09000 * 109.47116 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.47315 * 59.99656 * 1 2 3 27 27 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.08995 * 110.72326 * 271.94202 * 5 3 2 29 29 H 1.08999 * 110.71980 * 35.03979 * 5 3 2 30 30 H 1.09000 * 109.98996 * 218.66961 * 6 5 3 31 31 H 1.08997 * 109.77708 * 97.49391 * 6 5 3 32 32 H 1.07997 * 119.94400 * 0.02562 * 11 10 8 33 33 H 1.07993 * 120.05942 * 180.02562 * 12 11 10 34 34 H 0.97002 * 120.00099 * 180.02562 * 17 16 14 35 35 H 1.08005 * 120.05312 * 180.22599 * 22 13 12 36 36 H 1.08002 * 119.94484 * 179.79200 * 23 22 13 37 37 H 1.09003 * 110.36991 * 143.18868 * 24 7 6 38 38 H 1.08994 * 110.37014 * 265.40794 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3835 2.0104 0.5463 5 6 3.4485 1.2738 0.5811 6 6 4.1250 2.4828 -0.0990 7 7 3.3611 2.7807 -1.3194 8 6 3.6194 3.7828 -2.1829 9 8 2.8629 3.9962 -3.1105 10 6 4.8211 4.6213 -2.0023 11 6 5.6111 4.4712 -0.8562 12 6 6.7219 5.2428 -0.6852 13 6 7.0711 6.1965 -1.6617 14 6 8.2170 7.0013 -1.4868 15 1 8.7663 7.3531 -2.3476 16 6 8.6424 7.3444 -0.1955 17 7 9.8098 7.9040 -0.0194 18 14 7.5402 7.0012 1.2731 19 1 7.8841 5.6775 1.8516 20 1 7.7392 8.0565 2.2988 21 1 6.1209 6.9969 0.8364 22 6 6.2755 6.3410 -2.8154 23 6 5.1669 5.5645 -2.9776 24 6 2.2696 1.7978 -1.4457 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.4299 1.3981 1.6638 29 1 3.9539 0.3471 0.3094 30 1 5.1550 2.2369 -0.3572 31 1 4.1035 3.3424 0.5708 32 1 5.3405 3.7424 -0.1066 33 1 7.3308 5.1260 0.1990 34 1 10.1043 8.1410 0.8740 35 1 6.5415 7.0683 -3.5683 36 1 4.5545 5.6768 -3.8601 37 1 1.3760 2.2730 -1.8505 38 1 2.5781 0.9678 -2.0813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270370380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:20 Heat of formation + Delta-G solvation = -54.030008 kcal Electronic energy + Delta-G solvation = -20948.674986 eV Core-core repulsion = 17756.025206 eV Total energy + Delta-G solvation = -3192.649780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44860 -39.68693 -38.86340 -37.35902 -35.66821 -33.00709 -32.04267 -31.74073 -29.75660 -27.94628 -27.12119 -24.93460 -23.65584 -22.58598 -22.05775 -20.91543 -19.47838 -18.36047 -18.16720 -17.52579 -16.75336 -16.42051 -16.14487 -15.92294 -15.57448 -15.46137 -14.96666 -14.78291 -14.45261 -14.35804 -14.13513 -13.95686 -13.57031 -13.54270 -12.90122 -12.74987 -12.67847 -12.42388 -12.26146 -12.17045 -11.77143 -11.65230 -11.42874 -10.95923 -10.86437 -10.62002 -9.80693 -9.70029 -9.50073 -9.01061 -6.65626 0.23454 0.87347 1.24995 1.40306 1.51022 1.89283 1.92046 2.10543 2.66070 2.83092 3.39536 3.44701 3.55971 3.96626 3.99000 4.14279 4.19208 4.21737 4.39683 4.46244 4.55470 4.56784 4.62127 4.72223 4.74693 4.84192 4.88344 4.92061 5.00362 5.07899 5.15489 5.26527 5.49733 5.55978 5.74038 5.81818 6.09326 6.17604 6.23063 6.47471 6.59188 6.66724 7.23222 8.04879 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.004577 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.122975 B = 6115.476912 C = 6908.676801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.083 3.917 4 H 0.092 0.908 5 C -0.119 4.119 6 C 0.084 3.916 7 N -0.619 5.619 8 C 0.584 3.416 9 O -0.602 6.602 10 C -0.278 4.278 11 C -0.066 4.066 12 C -0.257 4.257 13 C 0.094 3.906 14 C -0.460 4.460 15 H 0.062 0.938 16 C 0.044 3.956 17 N -0.831 5.831 18 Si 0.971 3.029 19 H -0.241 1.241 20 H -0.280 1.280 21 H -0.248 1.248 22 C -0.232 4.232 23 C -0.026 4.026 24 C 0.083 3.917 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.174 0.826 33 H 0.113 0.887 34 H 0.301 0.699 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.006 -13.371 8.383 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C 0.024 3.976 4 H 0.110 0.890 5 C -0.156 4.156 6 C -0.038 4.038 7 N -0.353 5.353 8 C 0.380 3.620 9 O -0.486 6.486 10 C -0.283 4.283 11 C -0.083 4.083 12 C -0.276 4.276 13 C 0.091 3.909 14 C -0.488 4.488 15 H 0.080 0.920 16 C -0.174 4.174 17 N -0.455 5.455 18 Si 0.793 3.207 19 H -0.166 1.166 20 H -0.207 1.207 21 H -0.172 1.172 22 C -0.251 4.251 23 C -0.046 4.046 24 C -0.040 4.040 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.190 0.810 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.025 -13.253 7.973 20.220 hybrid contribution 0.051 0.758 -0.276 0.808 sum -12.974 -12.495 7.696 19.588 Atomic orbital electron populations 1.23034 0.79396 1.04158 1.00882 1.87896 1.21522 1.26407 1.94723 1.23220 0.95993 0.85326 0.93104 0.88992 1.22807 0.92815 0.97927 1.02067 1.22775 0.96725 0.98708 0.85560 1.48093 1.32180 1.29728 1.25312 1.18140 0.84724 0.78883 0.80244 1.90639 1.51248 1.72160 1.34546 1.19177 1.00871 1.07110 1.01114 1.22238 0.92187 0.97491 0.96409 1.20891 1.02269 1.02028 1.02387 1.18081 0.90581 0.90061 0.92222 1.19741 1.07683 1.27051 0.94321 0.91965 1.27081 0.95724 0.91474 1.03076 1.69582 1.18521 1.30088 1.27327 0.85435 0.80490 0.78915 0.75831 1.16623 1.20689 1.17170 1.20854 0.98036 1.04834 1.01385 1.20595 0.94856 0.92404 0.96711 1.22704 0.90351 0.91466 0.99486 0.92478 0.93940 0.87944 0.86440 0.88885 0.89329 0.89027 0.80962 0.86930 0.88813 0.87478 0.87285 0.91630 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.89 113.37 1.23 1.51 16 2 O -0.39 -7.14 10.51 -148.98 -1.57 -8.71 16 3 C 0.08 1.52 3.49 31.99 0.11 1.63 16 4 H 0.09 1.48 7.90 -2.39 -0.02 1.46 16 5 C -0.12 -1.89 6.68 31.79 0.21 -1.67 16 6 C 0.08 1.86 4.86 86.73 0.42 2.28 16 7 N -0.62 -18.92 3.33 -834.82 -2.78 -21.69 16 8 C 0.58 23.47 7.80 86.72 0.68 24.15 16 9 O -0.60 -27.90 16.57 -3.98 -0.07 -27.96 16 10 C -0.28 -11.76 5.89 -19.94 -0.12 -11.88 16 11 C -0.07 -2.53 8.53 22.25 0.19 -2.34 16 12 C -0.26 -11.21 6.84 22.47 0.15 -11.06 16 13 C 0.09 4.63 5.18 -21.28 -0.11 4.52 16 14 C -0.46 -24.52 9.61 23.46 0.23 -24.30 16 15 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 16 C 0.04 2.19 5.49 85.35 0.47 2.66 16 17 N -0.83 -42.51 13.92 21.87 0.30 -42.20 16 18 Si 0.97 38.70 24.35 68.60 1.67 40.37 16 19 H -0.24 -8.59 6.72 99.48 0.67 -7.92 16 20 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.25 -10.20 6.50 99.48 0.65 -9.56 16 22 C -0.23 -10.98 9.73 22.47 0.22 -10.76 16 23 C -0.03 -1.19 9.52 22.25 0.21 -0.98 16 24 C 0.08 2.13 6.67 86.86 0.58 2.71 16 25 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 26 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.97 6.76 -2.39 -0.02 1.95 16 31 H 0.09 1.90 6.70 -2.39 -0.02 1.89 16 32 H 0.17 5.09 2.69 -10.35 -0.03 5.06 16 33 H 0.11 4.64 4.16 -2.91 -0.01 4.63 16 34 H 0.30 13.63 8.29 -92.71 -0.77 12.86 16 35 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.11 4.78 7.65 -2.91 -0.02 4.75 16 37 H 0.07 1.81 7.99 -2.39 -0.02 1.79 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -64.77 307.28 3.00 -61.77 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.96 Total: 21.96 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.48 Total: -23.53 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -2.47 Total: -63.90 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.63 Total: -36.67 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.67 Total: 40.37 kcal Total: -64.77 3.00 -61.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270370380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.736 kcal (2) G-P(sol) polarization free energy of solvation -64.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds