Wall clock time and date at job start Mon Mar 30 2020 01:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34706 * 116.99992 * 2 1 4 4 O 1.21475 * 120.00465 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.39649 * 120.14640 * 356.05001 * 5 3 2 7 7 C 1.37924 * 119.84731 * 179.69701 * 6 5 3 8 8 C 1.38396 * 120.14818 * 0.30873 * 7 6 5 9 9 C 1.38345 * 120.30287 * 359.96859 * 8 7 6 10 10 C 1.37960 * 120.15057 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.07773 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47279 * 266.08051 * 11 10 9 13 13 C 1.36933 * 119.99935 * 83.17723 * 12 11 10 14 14 H 1.08004 * 120.00382 * 217.69258 * 13 12 11 15 15 C 1.38816 * 119.99812 * 37.70179 * 13 12 11 16 16 N 1.31613 * 120.00329 * 12.41325 * 15 13 12 17 17 Si 1.86805 * 119.99916 * 192.42129 * 15 13 12 18 18 H 1.48498 * 109.47118 * 59.99309 * 17 15 13 19 19 H 1.48501 * 109.47323 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46750 * 299.99731 * 17 15 13 21 21 C 1.46497 * 119.99870 * 263.18100 * 12 11 10 22 22 C 1.53001 * 117.49783 * 183.62604 * 21 12 11 23 23 C 1.53003 * 117.49852 * 114.96721 * 21 12 11 24 24 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47421 * 300.00197 * 1 2 3 26 26 H 1.09006 * 109.47164 * 59.99709 * 1 2 3 27 27 H 1.07997 * 120.07630 * 359.97438 * 6 5 3 28 28 H 1.07995 * 119.92698 * 180.28060 * 7 6 5 29 29 H 1.07993 * 119.84486 * 179.97438 * 8 7 6 30 30 H 1.07998 * 119.92062 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.46418 * 26.07903 * 11 10 9 32 32 H 1.09002 * 109.47292 * 146.07437 * 11 10 9 33 33 H 0.97001 * 120.00428 * 184.99950 * 16 15 13 34 34 H 1.08996 * 115.54903 * 329.29258 * 21 12 11 35 35 H 1.09002 * 117.49667 * 0.02562 * 22 21 12 36 36 H 1.09004 * 117.50080 * 145.01978 * 22 21 12 37 37 H 1.08995 * 117.49495 * 214.97576 * 23 21 12 38 38 H 1.08998 * 117.49901 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2191 0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3023 0.1112 0.0843 7 6 5.6792 0.1901 0.0780 8 6 6.3045 1.4220 -0.0046 9 6 5.5542 2.5818 -0.0820 10 6 4.1762 2.5173 -0.0768 11 6 3.3605 3.7818 -0.1606 12 7 3.0177 4.2323 1.1906 13 6 3.9146 4.9724 1.9137 14 1 4.0104 4.8157 2.9780 15 6 4.7004 5.9244 1.2788 16 7 4.4226 6.2910 0.0457 17 14 6.1526 6.6850 2.1746 18 1 7.1149 5.6190 2.5520 19 1 6.8247 7.6657 1.2848 20 1 5.6726 7.3747 3.3991 21 6 1.7154 3.8908 1.7682 22 6 1.3833 4.4615 3.1484 23 6 1.7043 2.9729 2.9922 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 3.8156 -0.8507 0.1493 28 1 6.2708 -0.7114 0.1381 29 1 7.3829 1.4782 -0.0087 30 1 6.0486 3.5399 -0.1466 31 1 3.9399 4.5549 -0.6653 32 1 2.4465 3.5880 -0.7219 33 1 5.0128 6.9012 -0.4236 34 1 0.8971 3.7892 1.0554 35 1 2.1335 5.0913 3.6264 36 1 0.3463 4.7349 3.3438 37 1 0.8784 2.2677 3.0849 38 1 2.6658 2.6228 3.3675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271161034.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:32 Heat of formation + Delta-G solvation = -9.395538 kcal Electronic energy + Delta-G solvation = -22251.388670 eV Core-core repulsion = 19060.674386 eV Total energy + Delta-G solvation = -3190.714284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55234 -39.68899 -38.56083 -37.21893 -35.44761 -33.19982 -32.30059 -31.24839 -28.61862 -27.45305 -25.45526 -24.51031 -23.02771 -22.70413 -21.72198 -21.34569 -18.81388 -18.38393 -17.66217 -17.40496 -17.14733 -16.55654 -16.16467 -15.88205 -15.55589 -15.23934 -14.89836 -14.33611 -14.24272 -14.08839 -13.42233 -13.27812 -13.00920 -12.90917 -12.77877 -12.64424 -12.56248 -12.32550 -12.27008 -11.97115 -11.72045 -11.64474 -11.42473 -10.88654 -10.65680 -10.36969 -9.83464 -9.56727 -8.49023 -7.67136 -5.48953 -0.09006 0.58793 1.45195 1.45674 1.52985 1.73762 1.87723 2.48706 2.93846 3.20275 3.46767 3.69377 3.90531 4.12595 4.15849 4.30304 4.31717 4.40828 4.43571 4.51078 4.57932 4.59865 4.68708 4.77135 4.84469 4.96826 5.02071 5.10908 5.22065 5.34239 5.43996 5.46531 5.50073 5.61273 5.63217 5.87792 5.95322 6.10854 6.50097 6.99675 7.18469 7.87247 8.41582 9.15572 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.008376 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.841164 B = 3342.138623 C = 4392.738687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.499 3.501 4 O -0.503 6.503 5 C -0.149 4.149 6 C -0.067 4.067 7 C -0.141 4.141 8 C -0.085 4.085 9 C -0.135 4.135 10 C -0.029 4.029 11 C 0.156 3.844 12 N -0.549 5.549 13 C -0.253 4.253 14 H 0.049 0.951 15 C -0.030 4.030 16 N -0.914 5.914 17 Si 0.954 3.046 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.280 1.280 21 C 0.133 3.867 22 C -0.197 4.197 23 C -0.207 4.207 24 H 0.134 0.866 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.149 0.851 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.253 0.747 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.584 -14.792 -0.949 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.345 3.655 4 O -0.392 6.392 5 C -0.151 4.151 6 C -0.085 4.085 7 C -0.159 4.159 8 C -0.103 4.103 9 C -0.154 4.154 10 C -0.032 4.032 11 C 0.031 3.969 12 N -0.264 5.264 13 C -0.383 4.383 14 H 0.067 0.933 15 C -0.227 4.227 16 N -0.558 5.558 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.206 1.206 21 C 0.025 3.975 22 C -0.235 4.235 23 C -0.248 4.248 24 H 0.152 0.848 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.171 0.829 28 H 0.182 0.818 29 H 0.167 0.833 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.796 -14.275 -1.054 14.426 hybrid contribution 0.510 0.968 0.538 1.219 sum -1.286 -13.308 -0.516 13.380 Atomic orbital electron populations 1.23474 0.74905 1.05430 1.02200 1.86495 1.24727 1.32020 1.84649 1.21451 0.89467 0.81502 0.73037 1.90808 1.67406 1.35644 1.45390 1.19124 0.89315 0.94981 1.11634 1.21636 0.94550 0.97284 0.95010 1.21397 0.94056 0.98478 1.01963 1.21706 1.01115 0.92032 0.95439 1.21052 0.93216 0.98995 1.02174 1.21126 0.95127 0.95427 0.91508 1.20378 0.97263 0.91614 0.87623 1.43263 1.11423 1.57353 1.14407 1.19071 1.15635 1.11273 0.92333 0.93333 1.25773 1.02934 0.96406 0.97563 1.69933 1.37617 1.35398 1.12831 0.85561 0.80018 0.78159 0.78061 1.20254 1.21359 1.20646 1.21300 0.89176 0.99451 0.87608 1.23137 1.01180 0.96041 1.03190 1.23181 1.00576 0.92557 1.08440 0.84764 0.92548 0.92270 0.82858 0.81776 0.83333 0.87757 0.89626 0.92656 0.93736 0.88376 0.90523 0.88245 0.89205 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -10.54 9.83 -56.16 -0.55 -11.09 16 3 C 0.50 18.31 7.85 70.33 0.55 18.87 16 4 O -0.50 -20.91 8.84 19.92 0.18 -20.73 16 5 C -0.15 -5.57 5.87 -20.10 -0.12 -5.68 16 6 C -0.07 -1.94 9.62 22.54 0.22 -1.72 16 7 C -0.14 -3.60 10.03 22.23 0.22 -3.38 16 8 C -0.09 -2.55 10.04 22.33 0.22 -2.33 16 9 C -0.14 -5.42 9.67 22.23 0.22 -5.21 16 10 C -0.03 -1.25 5.44 -19.60 -0.11 -1.35 16 11 C 0.16 7.92 4.99 85.63 0.43 8.34 16 12 N -0.55 -28.81 2.78 -682.33 -1.89 -30.71 16 13 C -0.25 -14.06 8.37 84.04 0.70 -13.36 16 14 H 0.05 2.76 6.90 -2.91 -0.02 2.74 16 15 C -0.03 -1.65 5.21 84.86 0.44 -1.20 16 16 N -0.91 -52.70 10.87 21.65 0.24 -52.46 16 17 Si 0.95 44.50 29.58 68.60 2.03 46.53 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 C 0.13 6.26 4.69 44.99 0.21 6.47 16 22 C -0.20 -8.45 9.78 30.62 0.30 -8.15 16 23 C -0.21 -8.59 10.32 30.62 0.32 -8.27 16 24 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.15 3.53 7.62 -2.91 -0.02 3.51 16 28 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.09 4.85 5.04 -2.39 -0.01 4.84 16 32 H 0.06 2.86 5.50 -2.39 -0.01 2.85 16 33 H 0.25 14.07 8.32 -92.71 -0.77 13.30 16 34 H 0.10 4.72 6.19 -2.39 -0.01 4.70 16 35 H 0.08 3.58 6.58 -2.39 -0.02 3.57 16 36 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -65.80 314.85 5.86 -59.94 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 1.06 Total: 23.59 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 4.80 Total: -15.06 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.66 Total: -83.17 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.38 Total: -31.82 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.80 5.86 -59.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271161034.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.543 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds