Wall clock time and date at job start Mon Mar 30 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34714 * 116.99808 * 2 1 4 4 O 1.21478 * 119.99726 * 0.02562 * 3 2 1 5 5 C 1.47720 * 120.00054 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.22699 * 0.02562 * 5 3 2 7 7 C 1.37725 * 119.67079 * 180.02562 * 6 5 3 8 8 C 1.38850 * 120.56304 * 359.95579 * 7 6 5 9 9 C 1.38012 * 120.07920 * 359.89113 * 8 7 6 10 10 C 1.38460 * 119.87398 * 0.22617 * 9 8 7 11 11 C 1.50660 * 121.83341 * 180.48962 * 9 8 7 12 12 N 1.46623 * 110.49987 * 342.39389 * 11 9 8 13 13 C 1.46903 * 111.00000 * 289.17395 * 12 11 9 14 14 C 1.50699 * 109.46994 * 292.97032 * 13 12 11 15 15 H 1.08002 * 120.00516 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99783 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99707 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99956 * 180.27458 * 16 14 13 19 19 H 1.48497 * 109.47172 * 179.72730 * 18 16 14 20 20 H 1.48506 * 109.47132 * 299.72429 * 18 16 14 21 21 H 1.48501 * 109.47173 * 59.72550 * 18 16 14 22 22 C 1.47152 * 110.23311 * 52.58458 * 12 11 9 23 23 C 1.50775 * 118.33358 * 179.85294 * 8 7 6 24 24 H 1.08991 * 109.47773 * 59.99643 * 1 2 3 25 25 H 1.08997 * 109.46815 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46949 * 299.99200 * 1 2 3 27 27 H 1.08003 * 120.17041 * 0.07624 * 6 5 3 28 28 H 1.07996 * 119.71497 * 179.97438 * 7 6 5 29 29 H 1.08002 * 119.86591 * 179.83614 * 10 9 8 30 30 H 1.08998 * 109.26839 * 222.13044 * 11 9 8 31 31 H 1.09002 * 109.26930 * 102.66313 * 11 9 8 32 32 H 1.09001 * 109.46349 * 172.97288 * 13 12 11 33 33 H 1.08997 * 109.46851 * 52.97271 * 13 12 11 34 34 H 0.97005 * 119.99656 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.63502 * 48.37254 * 22 12 11 36 36 H 1.09008 * 109.63235 * 168.95727 * 22 12 11 37 37 H 1.08997 * 109.38710 * 42.90581 * 23 8 7 38 38 H 1.08999 * 109.29961 * 283.16567 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.3040 0.1096 -0.0017 7 6 5.6786 0.1950 -0.0016 8 6 6.3091 1.4322 -0.0015 9 6 5.5591 2.5907 -0.0036 10 6 4.1764 2.5172 -0.0012 11 6 6.2017 3.9533 -0.0145 12 7 7.6070 3.8616 0.3937 13 6 7.7202 3.5569 1.8264 14 6 7.2108 4.7254 2.6302 15 1 6.8403 5.6064 2.1272 16 6 7.2185 4.6702 4.0079 17 7 7.6710 3.5979 4.6204 18 14 6.5799 6.1154 5.0042 19 1 6.6900 5.8056 6.4523 20 1 7.3845 7.3245 4.6941 21 1 5.1576 6.3653 4.6582 22 6 8.3076 2.8529 -0.4169 23 6 7.8164 1.4671 0.0019 24 1 -0.3634 0.5138 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 3.8204 -0.8562 -0.0033 28 1 6.2711 -0.7079 -0.0021 29 1 3.5897 3.4240 -0.0001 30 1 5.6688 4.6079 0.6752 31 1 6.1457 4.3695 -1.0204 32 1 8.7647 3.3714 2.0768 33 1 7.1283 2.6713 2.0573 34 1 7.6769 3.5592 5.5896 35 1 8.0893 3.0153 -1.4724 36 1 9.3817 2.9277 -0.2465 37 1 8.1972 0.7219 -0.6964 38 1 8.1797 1.2423 1.0047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271356264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:07 Heat of formation + Delta-G solvation = -77.187896 kcal Electronic energy + Delta-G solvation = -21147.069025 eV Core-core repulsion = 17953.415043 eV Total energy + Delta-G solvation = -3193.653981 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82038 -40.96517 -38.19296 -37.48951 -34.90118 -33.69311 -32.47315 -30.67346 -29.06412 -28.66504 -25.99232 -25.31619 -23.82079 -23.31222 -22.22953 -20.26665 -18.95968 -18.30141 -18.07398 -17.43734 -17.05093 -16.45736 -16.34159 -15.93347 -15.51113 -15.41645 -14.98158 -14.60918 -14.44486 -14.35431 -14.07271 -13.47037 -13.37663 -13.13116 -12.99972 -12.92066 -12.63480 -12.43823 -12.38328 -12.12582 -12.03114 -11.86854 -11.76406 -11.51582 -11.24444 -10.59081 -9.87107 -9.64114 -9.01540 -8.19177 -6.27131 -0.37555 0.34084 1.39601 1.41078 1.41851 1.49223 1.62065 2.40148 2.69690 3.14058 3.37018 3.60986 3.74741 3.83175 3.91633 4.12495 4.27844 4.29699 4.30693 4.33907 4.47414 4.53703 4.67091 4.71677 4.84251 4.91741 4.95419 4.97148 5.07103 5.16184 5.22389 5.26302 5.33464 5.38841 5.58605 5.65885 5.86421 6.08261 6.34203 6.59987 6.64448 6.88434 7.41540 8.91266 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.005616 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.999844 B = 4984.563879 C = 6038.912026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.539 6.539 5 C -0.152 4.152 6 C -0.060 4.060 7 C -0.131 4.131 8 C -0.045 4.045 9 C -0.123 4.123 10 C -0.061 4.061 11 C 0.098 3.902 12 N -0.538 5.538 13 C 0.209 3.791 14 C -0.526 4.526 15 H 0.059 0.941 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.959 3.041 19 H -0.283 1.283 20 H -0.266 1.266 21 H -0.274 1.274 22 C 0.048 3.952 23 C -0.118 4.118 24 H 0.065 0.935 25 H 0.139 0.861 26 H 0.059 0.941 27 H 0.163 0.837 28 H 0.160 0.840 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.003 0.997 33 H -0.020 1.020 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -10.530 -12.103 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.362 3.638 4 O -0.431 6.431 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.149 4.149 8 C -0.045 4.045 9 C -0.125 4.125 10 C -0.080 4.080 11 C -0.030 4.030 12 N -0.259 5.259 13 C 0.083 3.917 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.208 1.208 20 H -0.191 1.191 21 H -0.199 1.199 22 C -0.080 4.080 23 C -0.156 4.156 24 H 0.084 0.916 25 H 0.157 0.843 26 H 0.077 0.923 27 H 0.181 0.819 28 H 0.178 0.822 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.021 0.979 33 H -0.003 1.003 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.764 -9.839 -12.010 17.359 hybrid contribution -0.914 0.168 1.204 1.521 sum -8.679 -9.672 -10.806 16.901 Atomic orbital electron populations 1.23623 0.74159 1.06096 1.02600 1.86526 1.25357 1.31223 1.83846 1.21316 0.89218 0.81588 0.71702 1.90803 1.67434 1.37164 1.47725 1.19075 0.88965 0.95493 1.11738 1.21571 0.93691 0.97973 0.94556 1.21406 0.94597 0.97647 1.01215 1.20208 0.96764 0.92910 0.94618 1.20543 0.93344 0.97733 1.00899 1.21180 0.94009 0.97110 0.95659 1.21052 0.88700 0.91889 1.01382 1.62622 1.11294 1.46518 1.05499 1.19356 0.94601 0.94411 0.83319 1.21494 1.41153 1.02339 0.91403 0.92272 1.25780 0.95741 0.98650 0.99025 1.70057 1.48041 1.29722 1.09321 0.85596 0.78940 0.79747 0.77338 1.20826 1.19128 1.19883 1.22335 0.99161 0.88286 0.98192 1.21212 0.90480 1.00943 1.02928 0.91637 0.84261 0.92266 0.81950 0.82212 0.85604 0.91116 0.88446 0.97882 1.00271 0.92840 0.89066 0.90132 0.86743 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.35 -8.64 9.83 -56.24 -0.55 -9.19 16 3 C 0.51 16.00 7.90 70.33 0.56 16.56 16 4 O -0.54 -19.58 16.13 19.91 0.32 -19.26 16 5 C -0.15 -4.79 5.87 -20.15 -0.12 -4.91 16 6 C -0.06 -1.57 9.62 22.49 0.22 -1.36 16 7 C -0.13 -3.48 9.63 22.30 0.21 -3.26 16 8 C -0.04 -1.44 5.07 -19.75 -0.10 -1.54 16 9 C -0.12 -4.47 5.19 -19.88 -0.10 -4.57 16 10 C -0.06 -2.14 9.20 22.60 0.21 -1.94 16 11 C 0.10 3.78 5.41 85.60 0.46 4.24 16 12 N -0.54 -22.51 5.01 -905.76 -4.54 -27.05 16 13 C 0.21 10.85 3.68 85.56 0.32 11.17 16 14 C -0.53 -29.88 8.37 25.60 0.21 -29.67 16 15 H 0.06 3.32 7.25 -2.91 -0.02 3.30 16 16 C 0.01 0.36 5.46 84.66 0.46 0.82 16 17 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 18 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 C 0.05 1.55 6.02 86.21 0.52 2.07 16 23 C -0.12 -3.53 5.16 29.83 0.15 -3.37 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.16 3.22 7.62 -2.91 -0.02 3.20 16 28 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.13 4.51 7.64 -2.91 -0.02 4.49 16 30 H 0.07 3.08 6.68 -2.39 -0.02 3.06 16 31 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 33 H -0.02 -1.14 5.90 -2.39 -0.01 -1.15 16 34 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 35 H 0.09 2.46 8.05 -2.39 -0.02 2.44 16 36 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.07 2.31 7.05 -2.39 -0.02 2.30 16 Total: -1.00 -70.01 315.72 2.80 -67.21 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.06 Total: 11.03 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.20 Total: -14.08 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -4.25 Total: -82.88 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.23 Total: -28.45 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.01 2.80 -67.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271356264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.982 kcal (2) G-P(sol) polarization free energy of solvation -70.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds