Wall clock time and date at job start Mon Mar 30 2020 02:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 119.99770 * 2 1 4 4 H 1.48504 * 109.47167 * 239.99699 * 3 2 1 5 5 H 1.48497 * 109.47420 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 120.00013 * 3 2 1 7 7 C 1.38804 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99746 * 162.56113 * 7 2 1 9 9 N 1.36934 * 120.00824 * 342.82852 * 7 2 1 10 10 C 1.46960 * 120.60057 * 151.28959 * 9 7 2 11 11 C 1.53806 * 108.39912 * 124.76092 * 10 9 7 12 12 N 1.46963 * 108.58078 * 49.64281 * 11 10 9 13 13 C 1.34776 * 120.59877 * 124.62257 * 12 11 10 14 14 O 1.21279 * 120.00093 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99763 * 0.02562 * 13 12 11 16 16 C 1.50693 * 109.47115 * 179.97438 * 15 13 12 17 17 C 1.38652 * 120.79232 * 269.72059 * 16 15 13 18 18 C 1.38205 * 119.16307 * 179.79738 * 17 16 15 19 19 N 1.31865 * 120.76656 * 0.48927 * 18 17 16 20 20 C 1.31874 * 121.72248 * 359.74078 * 19 18 17 21 21 C 1.38203 * 120.76446 * 0.02562 * 20 19 18 22 22 C 1.46965 * 118.80800 * 304.64671 * 12 11 10 23 23 C 1.46968 * 120.58904 * 331.57781 * 9 7 2 24 24 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.61464 * 244.55099 * 10 9 7 26 26 H 1.09004 * 109.60410 * 5.05435 * 10 9 7 27 27 H 1.08997 * 109.74276 * 289.85313 * 11 10 9 28 28 H 1.09004 * 109.67587 * 169.39005 * 11 10 9 29 29 H 1.09001 * 109.47137 * 300.00288 * 15 13 12 30 30 H 1.09007 * 109.47022 * 59.99996 * 15 13 12 31 31 H 1.08004 * 120.41849 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.61704 * 180.20684 * 18 17 16 33 33 H 1.07998 * 119.61629 * 179.97438 * 20 19 18 34 34 H 1.08005 * 120.41782 * 179.97438 * 21 20 19 35 35 H 1.08996 * 109.61476 * 295.47839 * 22 12 11 36 36 H 1.09010 * 109.75120 * 175.04934 * 22 12 11 37 37 H 1.09003 * 109.61422 * 354.94072 * 23 9 7 38 38 H 1.08999 * 109.61487 * 115.28316 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0531 -1.2238 -0.2798 9 7 1.3714 -2.3615 0.3511 10 6 1.8064 -3.6519 -0.2014 11 6 2.1101 -4.6033 0.9683 12 7 0.9731 -4.5787 1.8992 13 6 0.3436 -5.7196 2.2436 14 8 -0.5938 -5.6867 3.0123 15 6 0.8047 -7.0362 1.6734 16 6 -0.0583 -8.1473 2.2133 17 6 0.2861 -8.8097 3.3816 18 6 -0.5321 -9.8209 3.8487 19 7 -1.6230 -10.1635 3.1920 20 6 -1.9790 -9.5587 2.0755 21 6 -1.2126 -8.5354 1.5505 22 6 0.5344 -3.2876 2.4474 23 6 0.2343 -2.3368 1.2819 24 1 -0.4850 0.8401 -0.0004 25 1 1.0134 -4.0707 -0.8208 26 1 2.7052 -3.5085 -0.8012 27 1 3.0125 -4.2759 1.4845 28 1 2.2517 -5.6159 0.5906 29 1 0.7252 -7.0092 0.5866 30 1 1.8423 -7.2118 1.9575 31 1 1.1805 -8.5365 3.9218 32 1 -0.2726 -10.3395 4.7598 33 1 -2.8793 -9.8671 1.5650 34 1 -1.5092 -8.0442 0.6355 35 1 1.3246 -2.8665 3.0689 36 1 -0.3658 -3.4283 3.0458 37 1 0.0946 -1.3248 1.6621 38 1 -0.6688 -2.6613 0.7650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272355623.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:06 Heat of formation + Delta-G solvation = 30.454747 kcal Electronic energy + Delta-G solvation = -20976.994478 eV Core-core repulsion = 17820.300983 eV Total energy + Delta-G solvation = -3156.693495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43460 -39.37058 -36.87331 -34.01615 -33.84431 -31.24689 -31.24191 -30.60715 -28.54146 -26.74518 -23.79714 -23.51388 -23.10118 -22.22546 -20.50916 -18.68080 -17.27171 -16.72032 -16.51707 -16.19019 -15.68450 -15.19835 -14.94619 -14.81311 -13.89921 -13.77686 -13.72730 -13.55448 -13.33547 -13.11453 -12.81102 -12.68418 -12.08359 -11.76978 -11.48871 -11.26633 -10.85737 -10.79720 -10.64016 -10.31014 -10.02834 -9.92422 -9.85600 -9.55563 -9.29225 -9.18221 -8.63950 -8.31035 -6.77242 -5.89667 -3.35619 1.10900 1.18308 2.88196 3.31853 3.34105 3.38699 3.39743 3.82029 4.39149 4.39930 4.46402 4.65468 4.80754 5.02574 5.08188 5.17737 5.26118 5.28309 5.34267 5.58128 5.65542 5.69212 5.71965 5.80657 5.90137 6.08397 6.25251 6.27978 6.31961 6.43492 6.62143 6.65152 6.79336 7.19595 7.49116 7.67245 7.82452 7.91601 8.31170 8.47400 9.06765 9.69478 10.25942 11.17719 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.048012 B = 0.003615 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.052996 B = 7743.209333 C = 7839.076133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.087 3.913 12 N -0.596 5.596 13 C 0.511 3.489 14 O -0.548 6.548 15 C -0.106 4.106 16 C -0.014 4.014 17 C -0.160 4.160 18 C 0.096 3.904 19 N -0.491 5.491 20 C 0.097 3.903 21 C -0.158 4.158 22 C 0.087 3.913 23 C 0.158 3.842 24 H 0.257 0.743 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.133 0.867 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -15.701 2.939 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.038 4.038 12 N -0.328 5.328 13 C 0.298 3.702 14 O -0.427 6.427 15 C -0.146 4.146 16 C -0.023 4.023 17 C -0.180 4.180 18 C -0.060 4.060 19 N -0.200 5.200 20 C -0.059 4.059 21 C -0.178 4.178 22 C -0.036 4.036 23 C 0.032 3.968 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.151 0.849 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.780 -16.164 3.649 16.666 hybrid contribution 1.023 1.705 -0.462 2.041 sum 2.803 -14.459 3.187 15.070 Atomic orbital electron populations 1.70013 1.05347 1.25957 1.53071 1.25098 0.95298 0.98630 1.00398 0.86329 0.78907 0.83078 0.78184 1.20806 1.21557 1.20900 1.19147 0.92723 0.84671 1.42496 0.91471 1.44004 1.36544 1.01601 1.49212 1.21363 0.98468 0.87468 0.92411 1.22504 0.88460 1.00327 0.92499 1.48072 1.32561 1.06872 1.45320 1.20250 0.83096 0.85011 0.81817 1.90689 1.28718 1.86818 1.36475 1.20753 1.00210 0.91076 1.02522 1.19755 0.94517 0.93891 0.94114 1.21983 1.01806 0.97677 0.96551 1.22671 0.90152 0.94599 0.98611 1.67638 1.16223 1.28374 1.07788 1.22692 0.98679 0.92489 0.92053 1.22025 0.95295 0.98683 1.01815 1.22508 0.99859 0.82729 0.98492 1.21190 0.89003 0.98619 0.87982 0.93335 0.95861 0.91404 0.91422 0.90923 0.87536 0.87763 0.85045 0.82919 0.82833 0.84877 0.92156 0.90153 0.88237 0.95871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 11.20 55.49 0.62 -24.75 16 2 C 0.01 0.13 4.91 -17.43 -0.09 0.05 16 3 Si 0.91 20.90 29.59 -169.99 -5.03 15.87 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.80 9.57 -15.06 -0.14 -6.94 16 8 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -14.01 2.96 -171.77 -0.51 -14.52 16 10 C 0.13 2.45 6.70 -3.37 -0.02 2.42 16 11 C 0.09 1.30 6.52 -3.37 -0.02 1.28 16 12 N -0.60 -10.27 2.95 -172.21 -0.51 -10.77 16 13 C 0.51 8.42 7.69 -10.98 -0.08 8.34 16 14 O -0.55 -11.06 15.44 5.56 0.09 -10.98 16 15 C -0.11 -1.24 4.22 -29.04 -0.12 -1.36 16 16 C -0.01 -0.18 4.41 -104.32 -0.46 -0.64 16 17 C -0.16 -1.85 9.82 -39.44 -0.39 -2.24 16 18 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 19 N -0.49 -6.41 10.36 -13.25 -0.14 -6.55 16 20 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 21 C -0.16 -1.91 9.82 -39.44 -0.39 -2.30 16 22 C 0.09 1.72 6.59 -3.60 -0.02 1.70 16 23 C 0.16 3.70 5.51 -3.59 -0.02 3.68 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.80 5.91 -51.93 -0.31 0.50 16 29 H 0.11 1.06 7.68 -51.93 -0.40 0.67 16 30 H 0.10 0.96 7.87 -51.92 -0.41 0.55 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.61 7.00 -51.92 -0.36 1.25 16 37 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -32.36 315.34 -8.01 -40.37 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.13 Total: 0.71 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.15 Total: 5.88 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.53 Total: -56.59 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.36 -8.01 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272355623.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.823 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds