Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 119.99598 * 2 1 4 4 H 1.48500 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47010 * 299.99572 * 3 2 1 6 6 H 1.48494 * 109.47705 * 59.99805 * 3 2 1 7 7 C 1.40045 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99838 * 179.72688 * 7 2 1 9 9 C 1.46375 * 120.00306 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99383 * 354.71607 * 9 7 2 11 11 N 1.34769 * 120.00223 * 174.72056 * 9 7 2 12 12 C 1.47086 * 120.88273 * 4.94805 * 11 9 7 13 13 C 1.53698 * 108.27525 * 128.75562 * 12 11 9 14 14 N 1.46902 * 109.25502 * 54.08718 * 13 12 11 15 15 C 1.46902 * 110.99567 * 172.60710 * 14 13 12 16 16 C 1.50699 * 109.47129 * 314.29563 * 15 14 13 17 17 C 1.38674 * 120.41329 * 90.00593 * 16 15 14 18 18 C 1.38630 * 118.41742 * 180.02562 * 17 16 15 19 19 C 1.38221 * 119.16114 * 359.97438 * 18 17 16 20 20 N 1.31855 * 120.76751 * 0.02562 * 19 18 17 21 21 C 1.31890 * 121.72002 * 359.70066 * 20 19 18 22 22 C 1.46902 * 111.26685 * 296.75331 * 14 13 12 23 23 C 1.47080 * 120.88293 * 185.23035 * 11 9 7 24 24 H 0.96989 * 120.00376 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.62802 * 248.52847 * 12 11 9 26 26 H 1.08997 * 109.62711 * 9.10646 * 12 11 9 27 27 H 1.08998 * 109.64578 * 294.08224 * 13 12 11 28 28 H 1.08997 * 109.41874 * 173.94940 * 13 12 11 29 29 H 1.08996 * 109.47222 * 74.30201 * 15 14 13 30 30 H 1.09001 * 109.46448 * 194.29767 * 15 14 13 31 31 H 1.07997 * 120.79444 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.41626 * 180.02562 * 18 17 16 33 33 H 1.08006 * 119.61773 * 179.97438 * 19 18 17 34 34 H 1.07996 * 119.61285 * 180.31306 * 21 20 19 35 35 H 1.08998 * 109.49453 * 303.14509 * 22 14 13 36 36 H 1.08995 * 109.51008 * 183.08119 * 22 14 13 37 37 H 1.09000 * 109.62901 * 350.89394 * 23 11 9 38 38 H 1.09002 * 109.62783 * 111.27914 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3466 0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8819 2.3966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 -0.0039 9 6 1.2753 -2.4805 0.0005 10 8 0.0622 -2.4827 0.0971 11 7 1.9449 -3.6451 -0.1063 12 6 3.4155 -3.6724 -0.1154 13 6 3.8851 -4.6922 0.9342 14 7 3.2389 -5.9859 0.6757 15 6 3.7908 -7.0331 1.5456 16 6 5.2948 -6.9384 1.5537 17 6 5.9434 -6.1473 2.4900 18 6 7.3282 -6.0900 2.4594 19 6 8.0115 -6.8185 1.5040 20 7 7.3615 -7.5605 0.6290 21 6 6.0452 -7.6429 0.6318 22 6 1.7805 -5.8923 0.8246 23 6 1.2246 -4.9222 -0.2232 24 1 -0.4850 0.8399 -0.0004 25 1 3.7701 -3.9685 -1.1025 26 1 3.8015 -2.6841 0.1342 27 1 3.6148 -4.3433 1.9308 28 1 4.9671 -4.8068 0.8695 29 1 3.4129 -6.9000 2.5592 30 1 3.4904 -8.0118 1.1715 31 1 5.3831 -5.5885 3.2248 32 1 7.8662 -5.4844 3.1737 33 1 9.0904 -6.7789 1.4732 34 1 5.5479 -8.2651 -0.0975 35 1 1.5395 -5.5267 1.8228 36 1 1.3359 -6.8770 0.6808 37 1 0.1615 -4.7606 -0.0450 38 1 1.3700 -5.3345 -1.2217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273949396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = 17.171530 kcal Electronic energy + Delta-G solvation = -21125.459115 eV Core-core repulsion = 17968.189616 eV Total energy + Delta-G solvation = -3157.269499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47639 -38.71979 -36.65982 -34.02661 -32.54935 -32.38382 -31.54267 -30.44483 -27.77767 -26.20386 -24.35796 -23.79247 -23.02612 -21.75788 -20.63246 -18.83470 -17.19353 -16.74351 -16.41638 -15.86599 -15.55144 -15.12873 -14.50486 -14.32716 -14.25770 -13.97898 -13.82461 -13.56522 -13.19156 -13.14824 -12.52557 -12.26829 -11.86650 -11.58979 -11.41144 -11.18025 -10.97305 -10.94634 -10.77196 -10.47061 -10.23377 -10.04186 -9.82680 -9.56250 -9.14359 -8.89153 -8.20879 -7.60689 -7.20712 -6.22503 -4.67303 0.96419 1.14147 3.10404 3.18814 3.22730 3.61735 4.04791 4.16567 4.31718 4.52546 4.58665 4.63229 4.68937 4.85466 4.87714 5.22340 5.30025 5.42290 5.48562 5.58896 5.65265 5.68272 5.74561 5.83319 5.84126 5.97710 6.05880 6.13889 6.23330 6.44111 6.52013 6.56092 6.69166 7.14520 7.22508 7.42866 7.59080 7.85151 8.11174 8.34351 8.99688 9.41758 10.54875 10.73488 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.004553 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.854407 B = 6147.740133 C = 7059.468998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.129 3.871 13 C 0.038 3.962 14 N -0.530 5.530 15 C 0.095 3.905 16 C -0.128 4.128 17 C -0.069 4.069 18 C -0.173 4.173 19 C 0.094 3.906 20 N -0.487 5.487 21 C 0.116 3.884 22 C 0.046 3.954 23 C 0.125 3.875 24 H 0.268 0.732 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.582 -12.226 4.685 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.365 3.635 10 O -0.462 6.462 11 N -0.383 5.383 12 C 0.005 3.995 13 C -0.091 4.091 14 N -0.255 5.255 15 C -0.032 4.032 16 C -0.130 4.130 17 C -0.096 4.096 18 C -0.193 4.193 19 C -0.064 4.064 20 N -0.195 5.195 21 C -0.041 4.041 22 C -0.083 4.083 23 C 0.001 3.999 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.270 -12.698 3.624 18.026 hybrid contribution -0.060 1.512 1.535 2.155 sum 12.210 -11.187 5.160 17.345 Atomic orbital electron populations 1.70020 1.07072 1.27212 1.35359 1.25725 0.94603 1.00296 0.92557 0.86346 0.80515 0.81836 0.78270 1.18739 1.20094 1.20158 1.21006 0.93578 0.89268 1.54250 0.90958 1.18262 0.86900 0.82222 0.76092 1.90587 1.14412 1.86103 1.55050 1.48248 1.04724 1.05868 1.79477 1.21563 0.82651 0.98534 0.96793 1.22775 0.98538 0.89192 0.98587 1.62144 1.04890 1.05821 1.52629 1.21028 0.89160 0.97027 0.96034 1.20810 0.96900 0.98393 0.96903 1.21586 0.94633 0.95938 0.97395 1.22120 0.94884 1.01406 1.00905 1.22752 1.00407 0.92432 0.90781 1.67719 1.10032 1.18409 1.23359 1.22662 0.89126 0.96388 0.95897 1.22538 0.86754 0.99888 0.99104 1.21199 0.97888 0.84384 0.96468 0.92130 0.93243 0.88849 0.94738 0.90686 0.93966 0.89620 0.85066 0.84827 0.82957 0.82657 0.94654 0.90672 0.89505 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.91 11.84 55.55 0.66 -22.26 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 19.94 29.56 -169.99 -5.02 14.92 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -15.21 8.86 -35.63 -0.32 -15.53 16 8 H 0.07 1.85 5.74 -52.48 -0.30 1.55 16 9 C 0.56 15.95 7.62 -12.99 -0.10 15.85 16 10 O -0.58 -18.71 14.49 5.20 0.08 -18.64 16 11 N -0.64 -14.80 3.00 -173.84 -0.52 -15.32 16 12 C 0.13 2.48 6.50 -3.36 -0.02 2.45 16 13 C 0.04 0.59 4.81 -3.46 -0.02 0.58 16 14 N -0.53 -7.68 4.77 -235.47 -1.12 -8.80 16 15 C 0.10 1.09 5.45 -4.98 -0.03 1.06 16 16 C -0.13 -1.43 4.13 -104.49 -0.43 -1.86 16 17 C -0.07 -0.72 7.95 -39.28 -0.31 -1.03 16 18 C -0.17 -1.62 10.11 -39.44 -0.40 -2.02 16 19 C 0.09 0.94 11.18 -17.55 -0.20 0.75 16 20 N -0.49 -5.92 10.36 -13.25 -0.14 -6.05 16 21 C 0.12 1.34 10.86 -17.55 -0.19 1.15 16 22 C 0.05 0.72 5.58 -3.70 -0.02 0.70 16 23 C 0.13 2.46 6.61 -3.60 -0.02 2.44 16 24 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.09 1.85 5.46 -51.93 -0.28 1.57 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.08 5.54 -51.93 -0.29 0.80 16 29 H 0.04 0.47 8.03 -51.93 -0.42 0.06 16 30 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.09 1.89 7.04 -51.93 -0.37 1.52 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -34.49 311.61 -8.54 -43.03 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.01 Total: 1.56 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.15 Total: 6.87 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -1.13 Total: -52.43 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.08 Total: -18.64 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.49 -8.54 -43.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273949396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.203 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds