Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 119.99598 * 2 1 4 4 H 1.48500 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47010 * 299.99572 * 3 2 1 6 6 H 1.48494 * 109.47705 * 59.99805 * 3 2 1 7 7 C 1.40045 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99838 * 179.72688 * 7 2 1 9 9 C 1.46375 * 120.00306 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99383 * 354.71607 * 9 7 2 11 11 N 1.34769 * 120.00223 * 174.72056 * 9 7 2 12 12 C 1.47086 * 120.88273 * 4.94805 * 11 9 7 13 13 C 1.53698 * 108.27525 * 128.75562 * 12 11 9 14 14 N 1.46902 * 109.25502 * 54.08718 * 13 12 11 15 15 C 1.46902 * 110.99567 * 172.60710 * 14 13 12 16 16 C 1.50699 * 109.47129 * 314.29563 * 15 14 13 17 17 C 1.38674 * 120.41329 * 90.00593 * 16 15 14 18 18 C 1.38630 * 118.41742 * 180.02562 * 17 16 15 19 19 C 1.38221 * 119.16114 * 359.97438 * 18 17 16 20 20 N 1.31855 * 120.76751 * 0.02562 * 19 18 17 21 21 C 1.31890 * 121.72002 * 359.70066 * 20 19 18 22 22 C 1.46902 * 111.26685 * 296.75331 * 14 13 12 23 23 C 1.47080 * 120.88293 * 185.23035 * 11 9 7 24 24 H 0.96989 * 120.00376 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.62802 * 248.52847 * 12 11 9 26 26 H 1.08997 * 109.62711 * 9.10646 * 12 11 9 27 27 H 1.08998 * 109.64578 * 294.08224 * 13 12 11 28 28 H 1.08997 * 109.41874 * 173.94940 * 13 12 11 29 29 H 1.08996 * 109.47222 * 74.30201 * 15 14 13 30 30 H 1.09001 * 109.46448 * 194.29767 * 15 14 13 31 31 H 1.07997 * 120.79444 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.41626 * 180.02562 * 18 17 16 33 33 H 1.08006 * 119.61773 * 179.97438 * 19 18 17 34 34 H 1.07996 * 119.61285 * 180.31306 * 21 20 19 35 35 H 1.08998 * 109.49453 * 303.14509 * 22 14 13 36 36 H 1.08995 * 109.51008 * 183.08119 * 22 14 13 37 37 H 1.09000 * 109.62901 * 350.89394 * 23 11 9 38 38 H 1.09002 * 109.62783 * 111.27914 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3466 0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8819 2.3966 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0871 -1.2127 -0.0039 9 6 1.2753 -2.4805 0.0005 10 8 0.0622 -2.4827 0.0971 11 7 1.9449 -3.6451 -0.1063 12 6 3.4155 -3.6724 -0.1154 13 6 3.8851 -4.6922 0.9342 14 7 3.2389 -5.9859 0.6757 15 6 3.7908 -7.0331 1.5456 16 6 5.2948 -6.9384 1.5537 17 6 5.9434 -6.1473 2.4900 18 6 7.3282 -6.0900 2.4594 19 6 8.0115 -6.8185 1.5040 20 7 7.3615 -7.5605 0.6290 21 6 6.0452 -7.6429 0.6318 22 6 1.7805 -5.8923 0.8246 23 6 1.2246 -4.9222 -0.2232 24 1 -0.4850 0.8399 -0.0004 25 1 3.7701 -3.9685 -1.1025 26 1 3.8015 -2.6841 0.1342 27 1 3.6148 -4.3433 1.9308 28 1 4.9671 -4.8068 0.8695 29 1 3.4129 -6.9000 2.5592 30 1 3.4904 -8.0118 1.1715 31 1 5.3831 -5.5885 3.2248 32 1 7.8662 -5.4844 3.1737 33 1 9.0904 -6.7789 1.4732 34 1 5.5479 -8.2651 -0.0975 35 1 1.5395 -5.5267 1.8228 36 1 1.3359 -6.8770 0.6808 37 1 0.1615 -4.7606 -0.0450 38 1 1.3700 -5.3345 -1.2217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273949396.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = -7.935924 kcal Electronic energy + Delta-G solvation = -21126.547856 eV Core-core repulsion = 17968.189616 eV Total energy + Delta-G solvation = -3158.358239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34906 -40.23806 -38.37957 -35.57847 -34.64631 -33.41594 -32.53476 -31.86134 -29.28570 -27.96414 -25.63894 -24.80626 -24.26001 -22.91340 -22.08125 -20.55505 -18.54977 -17.92201 -17.83607 -17.26080 -16.65483 -16.52594 -16.03977 -15.88471 -15.63419 -15.38376 -15.19352 -14.52248 -14.43868 -14.07752 -13.96273 -13.72849 -13.35332 -13.06959 -12.99213 -12.72736 -12.69572 -12.40968 -12.21925 -11.99347 -11.92822 -11.79260 -10.96149 -10.68313 -10.36670 -9.95900 -9.80627 -9.44596 -9.02317 -8.30829 -6.85758 0.18078 0.36077 1.38761 1.39061 1.56727 2.22332 2.44060 2.66381 2.86285 3.14903 3.55116 3.57768 3.80333 3.92860 3.99618 4.09213 4.10270 4.12142 4.31170 4.37355 4.38272 4.56817 4.64723 4.65649 4.77514 4.81938 4.89170 4.93338 4.94528 5.15822 5.22119 5.35009 5.36330 5.71158 5.80661 5.97280 6.02224 6.11971 6.39999 6.86427 7.07373 7.39955 8.44575 8.65670 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022873 B = 0.004553 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.854407 B = 6147.740133 C = 7059.468998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.569 4.569 8 H 0.092 0.908 9 C 0.540 3.460 10 O -0.632 6.632 11 N -0.648 5.648 12 C 0.126 3.874 13 C 0.053 3.947 14 N -0.532 5.532 15 C 0.100 3.900 16 C -0.137 4.137 17 C -0.078 4.078 18 C -0.170 4.170 19 C 0.087 3.913 20 N -0.513 5.513 21 C 0.106 3.894 22 C 0.059 3.941 23 C 0.121 3.879 24 H 0.274 0.726 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.025 0.975 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.021 0.979 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.337 -12.508 5.249 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.605 4.605 8 H 0.110 0.890 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.385 5.385 12 C 0.002 3.998 13 C -0.076 4.076 14 N -0.257 5.257 15 C -0.027 4.027 16 C -0.139 4.139 17 C -0.105 4.105 18 C -0.189 4.189 19 C -0.070 4.070 20 N -0.221 5.221 21 C -0.050 4.050 22 C -0.069 4.069 23 C -0.003 4.003 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.039 0.961 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.079 -13.045 4.188 20.374 hybrid contribution -0.863 1.493 1.349 2.190 sum 14.216 -11.552 5.538 19.136 Atomic orbital electron populations 1.70191 1.09566 1.28869 1.36615 1.26985 0.95485 1.04920 0.91165 0.85012 0.79499 0.75517 0.78557 1.16784 1.19356 1.19350 1.21520 0.94734 0.89822 1.54463 0.88999 1.18675 0.86567 0.84184 0.75918 1.90533 1.16590 1.87386 1.57487 1.48131 1.06482 1.05650 1.78191 1.21716 0.80180 0.99419 0.98466 1.22560 0.99474 0.88978 0.96555 1.62105 1.03919 1.05766 1.53868 1.21071 0.89369 0.96547 0.95752 1.20774 0.96546 0.99116 0.97469 1.21800 0.95392 0.95864 0.97396 1.22413 0.94562 1.01010 1.00915 1.23239 1.01700 0.91736 0.90294 1.67739 1.10440 1.19483 1.24486 1.22842 0.89213 0.96716 0.96255 1.22358 0.87807 1.00178 0.96572 1.21338 0.96345 0.84030 0.98596 0.91600 0.92462 0.89843 0.95717 0.88784 0.93447 0.87595 0.84447 0.82238 0.80565 0.81866 0.96096 0.87205 0.92470 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.68 11.84 21.83 0.26 -50.42 16 2 C 0.03 1.64 5.50 85.30 0.47 2.11 16 3 Si 0.99 40.81 29.56 68.60 2.03 42.84 16 4 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.57 -32.34 8.86 24.83 0.22 -32.12 16 8 H 0.09 4.68 5.74 -2.91 -0.02 4.66 16 9 C 0.54 31.96 7.62 86.36 0.66 32.62 16 10 O -0.63 -43.07 14.49 -4.31 -0.06 -43.13 16 11 N -0.65 -30.32 3.00 -822.14 -2.47 -32.79 16 12 C 0.13 4.74 6.50 86.50 0.56 5.30 16 13 C 0.05 1.59 4.81 86.54 0.42 2.00 16 14 N -0.53 -14.30 4.77 -898.89 -4.29 -18.59 16 15 C 0.10 2.01 5.45 85.56 0.47 2.47 16 16 C -0.14 -2.72 4.13 -19.78 -0.08 -2.80 16 17 C -0.08 -1.42 7.95 22.47 0.18 -1.24 16 18 C -0.17 -2.65 10.11 22.36 0.23 -2.43 16 19 C 0.09 1.52 11.18 84.69 0.95 2.47 16 20 N -0.51 -11.39 10.36 -195.85 -2.03 -13.42 16 21 C 0.11 2.22 10.86 84.67 0.92 3.14 16 22 C 0.06 1.79 5.58 86.38 0.48 2.27 16 23 C 0.12 4.82 6.61 86.35 0.57 5.39 16 24 H 0.27 15.24 8.29 -92.72 -0.77 14.47 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.08 3.28 5.46 -2.39 -0.01 3.26 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 2.49 5.54 -2.39 -0.01 2.48 16 29 H 0.05 0.94 8.03 -2.39 -0.02 0.92 16 30 H 0.11 1.73 8.09 -2.39 -0.02 1.72 16 31 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 2.57 8.11 -2.39 -0.02 2.55 16 37 H 0.06 2.61 7.04 -2.39 -0.02 2.59 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -78.00 311.61 0.53 -77.46 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.06 Total: 18.86 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.03 Total: 19.19 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -8.53 Total: -115.22 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.06 Total: -43.13 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -78.00 0.53 -77.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273949396.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.529 kcal (2) G-P(sol) polarization free energy of solvation -77.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds