Wall clock time and date at job start Mon Mar 30 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86791 * 120.00284 * 2 1 4 4 H 1.48500 * 109.47237 * 239.99748 * 3 2 1 5 5 H 1.48499 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47358 * 119.99533 * 3 2 1 7 7 C 1.40053 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00299 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00142 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99857 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99973 * 180.02562 * 11 9 7 13 13 C 1.50694 * 109.47217 * 180.02562 * 12 11 9 14 14 C 1.38885 * 120.75220 * 90.00051 * 13 12 11 15 15 C 1.38021 * 119.33146 * 179.72615 * 14 13 12 16 16 N 1.31975 * 120.85607 * 359.97438 * 15 14 13 17 17 C 1.32393 * 121.62238 * 359.97438 * 16 15 14 18 18 N 1.39002 * 119.70320 * 180.02562 * 17 16 15 19 19 C 1.48536 * 111.00086 * 242.60917 * 18 17 16 20 20 C 1.54935 * 103.22904 * 159.72302 * 19 18 17 21 21 C 1.54600 * 102.91831 * 322.58711 * 20 19 18 22 22 C 1.47898 * 111.00219 * 0.02562 * 18 17 16 23 23 C 1.38298 * 120.74401 * 269.71600 * 13 12 11 24 24 H 0.96998 * 120.00142 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00570 * 359.97438 * 11 9 7 26 26 H 1.08995 * 109.47426 * 59.99092 * 12 11 9 27 27 H 1.09002 * 109.46820 * 299.99744 * 12 11 9 28 28 H 1.08000 * 120.33314 * 359.74275 * 14 13 12 29 29 H 1.07998 * 119.57019 * 179.97438 * 15 14 13 30 30 H 1.09008 * 110.66274 * 278.15770 * 19 18 17 31 31 H 1.08997 * 110.66798 * 41.28147 * 19 18 17 32 32 H 1.08996 * 110.72744 * 204.22960 * 20 19 18 33 33 H 1.09002 * 110.72179 * 80.94218 * 20 19 18 34 34 H 1.09005 * 110.30186 * 263.03945 * 21 20 19 35 35 H 1.08997 * 110.30842 * 140.87431 * 21 20 19 36 36 H 1.08998 * 109.91752 * 333.51004 * 22 18 17 37 37 H 1.09007 * 109.91731 * 94.80195 * 22 18 17 38 38 H 1.08004 * 120.45571 * 0.25149 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 3.0945 1.6962 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0016 12 6 1.2163 -4.9165 0.0010 13 6 2.1955 -6.0619 0.0030 14 6 2.6551 -6.6012 1.1976 15 6 3.5474 -7.6537 1.1652 16 7 3.9661 -8.1510 0.0167 17 6 3.5506 -7.6654 -1.1427 18 7 4.0172 -8.2201 -2.3288 19 6 4.7823 -7.2217 -3.1187 20 6 5.6338 -8.0994 -4.0700 21 6 6.0165 -9.3037 -3.1793 22 6 4.9578 -9.3296 -2.0611 23 6 2.6523 -6.6036 -1.1846 24 1 -0.4850 0.8400 -0.0004 25 1 2.9188 -3.6479 0.0020 26 1 0.5906 -4.9744 -0.8895 27 1 0.5887 -4.9740 0.8903 28 1 2.3175 -6.2011 2.1422 29 1 3.9076 -8.0757 2.0918 30 1 4.1073 -6.5816 -3.6868 31 1 5.4229 -6.6259 -2.4685 32 1 6.5245 -7.5626 -4.3964 33 1 5.0431 -8.4252 -4.9262 34 1 7.0108 -9.1603 -2.7561 35 1 5.9797 -10.2277 -3.7562 36 1 5.4369 -9.1847 -1.0928 37 1 4.4247 -10.2803 -2.0760 38 1 2.3152 -6.2090 -2.1318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273990031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:41 Heat of formation + Delta-G solvation = 7.283164 kcal Electronic energy + Delta-G solvation = -20432.553722 eV Core-core repulsion = 17274.855432 eV Total energy + Delta-G solvation = -3157.698290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75279 -38.48609 -37.23586 -34.33712 -32.76637 -32.49104 -31.41756 -29.15923 -28.97480 -27.14728 -25.22847 -23.41985 -22.54312 -21.11170 -20.35923 -19.69911 -17.71066 -16.84366 -16.69438 -15.88352 -15.64634 -15.36669 -14.67929 -14.63880 -14.15365 -14.02466 -13.77394 -13.31906 -13.05497 -12.65960 -12.53335 -12.30529 -11.88249 -11.83201 -11.55034 -11.36695 -11.30071 -11.20466 -10.88841 -10.78176 -10.50281 -10.29589 -9.92394 -9.58548 -9.38107 -8.87708 -8.16586 -7.66283 -7.59078 -6.21911 -4.68002 1.19858 1.30830 3.14041 3.19010 3.20878 3.46840 3.86429 4.09595 4.28137 4.42452 4.55080 4.68035 4.74184 4.83536 5.08530 5.11811 5.17290 5.21296 5.28886 5.31516 5.54045 5.58916 5.61931 5.69668 5.78238 5.80378 5.83298 5.93318 6.04481 6.10678 6.30114 6.46457 6.54083 6.67747 7.15037 7.40125 7.85689 7.99596 8.00431 8.27819 8.98817 9.46547 10.55664 10.73586 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023635 B = 0.003699 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.405476 B = 7568.096618 C = 8214.191283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.762 5.762 12 C 0.168 3.832 13 C -0.024 4.024 14 C -0.181 4.181 15 C 0.117 3.883 16 N -0.523 5.523 17 C 0.295 3.705 18 N -0.463 5.463 19 C 0.042 3.958 20 C -0.124 4.124 21 C -0.133 4.133 22 C 0.036 3.964 23 C -0.162 4.162 24 H 0.269 0.731 25 H 0.381 0.619 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.732 -15.554 -3.617 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.462 6.462 11 N -0.418 5.418 12 C 0.044 3.956 13 C -0.033 4.033 14 C -0.202 4.202 15 C -0.040 4.040 16 N -0.237 5.237 17 C 0.064 3.936 18 N -0.181 5.181 19 C -0.084 4.084 20 C -0.162 4.162 21 C -0.171 4.171 22 C -0.091 4.091 23 C -0.185 4.185 24 H 0.080 0.920 25 H 0.212 0.788 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.763 -16.331 -3.944 19.952 hybrid contribution 0.837 1.620 0.489 1.888 sum 11.600 -14.711 -3.455 19.050 Atomic orbital electron populations 1.70005 1.07060 1.27464 1.35076 1.25708 0.94638 1.00296 0.92602 0.86415 0.79806 0.80959 0.79460 1.19274 1.20518 1.19268 1.20828 0.93549 0.89251 1.54530 0.91462 1.18247 0.87216 0.82242 0.76370 1.90607 1.14047 1.86605 1.54930 1.46187 1.08568 1.04020 1.83026 1.19837 0.91925 0.81840 1.02033 1.20524 0.94942 0.95321 0.92466 1.22020 1.00478 0.98629 0.99071 1.22450 0.93539 0.92849 0.95170 1.67461 1.26173 1.31953 0.98154 1.19870 0.93884 0.91164 0.88714 1.62004 1.34165 1.08484 1.13493 1.23340 0.95672 0.93948 0.95407 1.22511 0.99564 0.96015 0.98075 1.22460 0.98722 0.99062 0.96884 1.22859 0.92703 0.94215 0.99317 1.21508 0.99657 0.97793 0.99494 0.91978 0.78799 0.91997 0.91900 0.84628 0.82827 0.89011 0.92646 0.90523 0.90402 0.91322 0.90897 0.90088 0.90326 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.90 11.83 55.55 0.66 -22.24 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.27 9.54 -35.63 -0.34 -15.61 16 8 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 9 C 0.55 15.66 7.75 -12.99 -0.10 15.56 16 10 O -0.58 -18.64 15.02 5.20 0.08 -18.56 16 11 N -0.76 -16.88 5.54 -62.91 -0.35 -17.22 16 12 C 0.17 3.22 5.85 -5.20 -0.03 3.19 16 13 C -0.02 -0.37 5.28 -104.36 -0.55 -0.92 16 14 C -0.18 -2.48 9.81 -39.42 -0.39 -2.87 16 15 C 0.12 1.48 11.17 -17.57 -0.20 1.28 16 16 N -0.52 -7.34 8.14 -12.44 -0.10 -7.44 16 17 C 0.29 4.21 6.21 -155.02 -0.96 3.24 16 18 N -0.46 -5.81 5.29 -169.22 -0.90 -6.70 16 19 C 0.04 0.45 6.05 -1.90 -0.01 0.44 16 20 C -0.12 -1.02 7.06 -24.87 -0.18 -1.19 16 21 C -0.13 -1.10 6.93 -25.36 -0.18 -1.27 16 22 C 0.04 0.39 6.35 -2.74 -0.02 0.37 16 23 C -0.16 -2.41 9.16 -39.22 -0.36 -2.77 16 24 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 25 H 0.38 7.60 8.44 -40.82 -0.34 7.25 16 26 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.06 0.62 8.00 -51.93 -0.42 0.21 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.97 6.50 -51.93 -0.34 0.63 16 37 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.14 1.97 8.05 -52.48 -0.42 1.55 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -34.06 321.67 -9.48 -43.54 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.29 Total: 7.06 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -3.40 Total: 1.77 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.69 Total: -53.61 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.08 Total: -18.56 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.06 -9.48 -43.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273990031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.826 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds