Wall clock time and date at job start Mon Mar 30 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86791 * 120.00284 * 2 1 4 4 H 1.48500 * 109.47237 * 239.99748 * 3 2 1 5 5 H 1.48499 * 109.47240 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47358 * 119.99533 * 3 2 1 7 7 C 1.40053 * 119.99472 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00299 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00142 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99857 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99973 * 180.02562 * 11 9 7 13 13 C 1.50694 * 109.47217 * 180.02562 * 12 11 9 14 14 C 1.38885 * 120.75220 * 90.00051 * 13 12 11 15 15 C 1.38021 * 119.33146 * 179.72615 * 14 13 12 16 16 N 1.31975 * 120.85607 * 359.97438 * 15 14 13 17 17 C 1.32393 * 121.62238 * 359.97438 * 16 15 14 18 18 N 1.39002 * 119.70320 * 180.02562 * 17 16 15 19 19 C 1.48536 * 111.00086 * 242.60917 * 18 17 16 20 20 C 1.54935 * 103.22904 * 159.72302 * 19 18 17 21 21 C 1.54600 * 102.91831 * 322.58711 * 20 19 18 22 22 C 1.47898 * 111.00219 * 0.02562 * 18 17 16 23 23 C 1.38298 * 120.74401 * 269.71600 * 13 12 11 24 24 H 0.96998 * 120.00142 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00570 * 359.97438 * 11 9 7 26 26 H 1.08995 * 109.47426 * 59.99092 * 12 11 9 27 27 H 1.09002 * 109.46820 * 299.99744 * 12 11 9 28 28 H 1.08000 * 120.33314 * 359.74275 * 14 13 12 29 29 H 1.07998 * 119.57019 * 179.97438 * 15 14 13 30 30 H 1.09008 * 110.66274 * 278.15770 * 19 18 17 31 31 H 1.08997 * 110.66798 * 41.28147 * 19 18 17 32 32 H 1.08996 * 110.72744 * 204.22960 * 20 19 18 33 33 H 1.09002 * 110.72179 * 80.94218 * 20 19 18 34 34 H 1.09005 * 110.30186 * 263.03945 * 21 20 19 35 35 H 1.08997 * 110.30842 * 140.87431 * 21 20 19 36 36 H 1.08998 * 109.91752 * 333.51004 * 22 18 17 37 37 H 1.09007 * 109.91731 * 94.80195 * 22 18 17 38 38 H 1.08004 * 120.45571 * 0.25149 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 3.0945 1.6962 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9488 -3.6478 0.0016 12 6 1.2163 -4.9165 0.0010 13 6 2.1955 -6.0619 0.0030 14 6 2.6551 -6.6012 1.1976 15 6 3.5474 -7.6537 1.1652 16 7 3.9661 -8.1510 0.0167 17 6 3.5506 -7.6654 -1.1427 18 7 4.0172 -8.2201 -2.3288 19 6 4.7823 -7.2217 -3.1187 20 6 5.6338 -8.0994 -4.0700 21 6 6.0165 -9.3037 -3.1793 22 6 4.9578 -9.3296 -2.0611 23 6 2.6523 -6.6036 -1.1846 24 1 -0.4850 0.8400 -0.0004 25 1 2.9188 -3.6479 0.0020 26 1 0.5906 -4.9744 -0.8895 27 1 0.5887 -4.9740 0.8903 28 1 2.3175 -6.2011 2.1422 29 1 3.9076 -8.0757 2.0918 30 1 4.1073 -6.5816 -3.6868 31 1 5.4229 -6.6259 -2.4685 32 1 6.5245 -7.5626 -4.3964 33 1 5.0431 -8.4252 -4.9262 34 1 7.0108 -9.1603 -2.7561 35 1 5.9797 -10.2277 -3.7562 36 1 5.4369 -9.1847 -1.0928 37 1 4.4247 -10.2803 -2.0760 38 1 2.3152 -6.2090 -2.1318 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273990031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:40 Heat of formation + Delta-G solvation = -16.542842 kcal Electronic energy + Delta-G solvation = -20433.586895 eV Core-core repulsion = 17274.855432 eV Total energy + Delta-G solvation = -3158.731463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81252 -39.68435 -39.03685 -35.96220 -34.60374 -33.67950 -33.05103 -30.05585 -29.93479 -29.00558 -26.95726 -24.43127 -23.66154 -22.02630 -21.76443 -21.26767 -19.43571 -18.17280 -17.74024 -17.44237 -16.94055 -16.61175 -16.25826 -15.99073 -15.53546 -15.41502 -14.99268 -14.67098 -14.37576 -13.91786 -13.69898 -13.58271 -13.32623 -13.12561 -12.97155 -12.78067 -12.63876 -12.60095 -12.25776 -12.11575 -12.06002 -11.46332 -10.99384 -10.93031 -10.79380 -10.46481 -9.88126 -9.57425 -9.17907 -8.30768 -6.88118 0.09821 0.13246 1.40587 1.43709 1.55794 2.24118 2.44865 2.47262 2.77895 3.20231 3.38493 3.57360 3.60166 3.70639 3.85160 4.00244 4.08486 4.16694 4.19750 4.32229 4.52392 4.55761 4.66057 4.75850 4.77300 4.79671 4.90257 4.96048 5.05221 5.12877 5.27652 5.30254 5.36131 5.49609 5.62909 5.83413 6.10414 6.12739 6.21871 6.84706 6.91913 7.47255 8.44750 8.64545 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023635 B = 0.003699 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.405476 B = 7568.096618 C = 8214.191283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.539 3.461 10 O -0.630 6.630 11 N -0.748 5.748 12 C 0.175 3.825 13 C -0.032 4.032 14 C -0.182 4.182 15 C 0.125 3.875 16 N -0.528 5.528 17 C 0.293 3.707 18 N -0.473 5.473 19 C 0.038 3.962 20 C -0.117 4.117 21 C -0.127 4.127 22 C 0.034 3.966 23 C -0.171 4.171 24 H 0.276 0.724 25 H 0.393 0.607 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.148 0.852 29 H 0.191 0.809 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.426 -15.875 -3.667 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.609 4.609 8 H 0.105 0.895 9 C 0.344 3.656 10 O -0.517 6.517 11 N -0.402 5.402 12 C 0.051 3.949 13 C -0.041 4.041 14 C -0.203 4.203 15 C -0.032 4.032 16 N -0.243 5.243 17 C 0.062 3.938 18 N -0.192 5.192 19 C -0.088 4.088 20 C -0.155 4.155 21 C -0.165 4.165 22 C -0.093 4.093 23 C -0.194 4.194 24 H 0.085 0.915 25 H 0.227 0.773 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.166 0.834 29 H 0.208 0.792 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.511 -16.708 -4.007 21.858 hybrid contribution -0.001 1.587 0.505 1.665 sum 13.510 -15.122 -3.503 20.578 Atomic orbital electron populations 1.70174 1.09533 1.29131 1.36166 1.26982 0.95539 1.04955 0.91155 0.85053 0.78196 0.74641 0.80309 1.17832 1.19867 1.17789 1.21380 0.94724 0.89934 1.54859 0.89459 1.18618 0.86831 0.84091 0.76085 1.90561 1.16134 1.87772 1.57278 1.45805 1.09107 1.03917 1.81409 1.19750 0.92497 0.81846 1.00794 1.20173 0.95247 0.94822 0.93832 1.22164 1.00567 0.98890 0.98691 1.23010 0.92261 0.91828 0.96069 1.67594 1.26227 1.32037 0.98425 1.20020 0.93552 0.90715 0.89544 1.62005 1.35042 1.09321 1.12846 1.23421 0.95725 0.94072 0.95543 1.22526 0.99816 0.95604 0.97546 1.22455 0.98197 0.99756 0.96076 1.22916 0.92983 0.93433 0.99923 1.21473 1.00310 0.98519 0.99084 0.91456 0.77337 0.93580 0.92830 0.83447 0.79225 0.89278 0.93398 0.88780 0.89894 0.90334 0.89366 0.91125 0.90474 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.17 11.83 21.84 0.26 -49.91 16 2 C 0.03 1.61 5.50 85.31 0.47 2.08 16 3 Si 1.00 40.56 29.56 68.60 2.03 42.59 16 4 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.57 -32.36 9.54 24.83 0.24 -32.12 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.54 31.34 7.75 86.36 0.67 32.01 16 10 O -0.63 -42.35 15.02 -4.30 -0.06 -42.42 16 11 N -0.75 -33.86 5.54 -471.16 -2.61 -36.47 16 12 C 0.18 6.94 5.85 85.63 0.50 7.44 16 13 C -0.03 -1.01 5.28 -19.70 -0.10 -1.11 16 14 C -0.18 -4.78 9.81 22.37 0.22 -4.56 16 15 C 0.13 2.90 11.17 84.62 0.95 3.84 16 16 N -0.53 -13.98 8.14 -193.27 -1.57 -15.56 16 17 C 0.29 8.15 6.21 133.07 0.83 8.97 16 18 N -0.47 -11.45 5.29 -689.30 -3.65 -15.10 16 19 C 0.04 0.77 6.05 86.65 0.52 1.29 16 20 C -0.12 -1.67 7.06 31.80 0.22 -1.44 16 21 C -0.13 -1.78 6.93 31.48 0.22 -1.56 16 22 C 0.03 0.69 6.35 86.45 0.55 1.24 16 23 C -0.17 -5.12 9.16 22.50 0.21 -4.92 16 24 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 25 H 0.39 15.74 8.44 -92.71 -0.78 14.96 16 26 H 0.05 1.95 8.10 -2.39 -0.02 1.94 16 27 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 28 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 29 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.05 1.04 8.00 -2.39 -0.02 1.02 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.58 6.50 -2.39 -0.02 1.56 16 37 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.13 3.95 8.05 -2.91 -0.02 3.93 16 Total: -1.00 -75.63 321.67 0.16 -75.48 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.29 Total: 30.24 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.49 Total: 11.15 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -7.58 Total: -117.04 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.06 Total: -42.42 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -75.63 0.16 -75.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273990031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.934 kcal (2) G-P(sol) polarization free energy of solvation -75.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds