Wall clock time and date at job start Mon Mar 30 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48495 * 109.47440 * 240.00269 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47193 * 120.00283 * 3 2 1 7 7 C 1.40047 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99791 * 351.83611 * 9 7 2 11 11 N 1.34776 * 120.00215 * 171.84084 * 9 7 2 12 12 C 1.47074 * 120.88104 * 174.85196 * 11 9 7 13 13 C 1.53239 * 108.52123 * 231.20618 * 12 11 9 14 14 N 1.46903 * 109.33900 * 306.16831 * 13 12 11 15 15 C 1.46897 * 111.00426 * 187.25323 * 14 13 12 16 16 C 1.50689 * 109.47473 * 170.00264 * 15 14 13 17 17 C 1.38221 * 119.62223 * 95.00181 * 16 15 14 18 18 C 1.38629 * 119.16484 * 180.27546 * 17 16 15 19 19 C 1.38674 * 118.42133 * 359.48273 * 18 17 16 20 20 C 1.38187 * 119.15837 * 0.47508 * 19 18 17 21 21 N 1.31861 * 119.61789 * 274.97718 * 16 15 14 22 22 C 1.46902 * 111.26730 * 63.10482 * 14 13 12 23 23 C 1.47082 * 120.87986 * 354.87053 * 11 9 7 24 24 H 0.97003 * 120.00345 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.62580 * 111.49613 * 12 11 9 26 26 H 1.09001 * 109.78633 * 351.00977 * 12 11 9 27 27 H 1.08999 * 109.49685 * 186.21518 * 13 12 11 28 28 H 1.09003 * 109.51676 * 66.14099 * 13 12 11 29 29 H 1.09001 * 109.46875 * 49.99908 * 15 14 13 30 30 H 1.09004 * 109.47215 * 290.00523 * 15 14 13 31 31 H 1.08004 * 120.41815 * 0.02562 * 17 16 15 32 32 H 1.08003 * 120.79309 * 179.72017 * 18 17 16 33 33 H 1.07993 * 120.41968 * 180.21882 * 19 18 17 34 34 H 1.07996 * 119.61892 * 179.77109 * 20 19 18 35 35 H 1.09000 * 109.49576 * 56.85412 * 22 14 13 36 36 H 1.08998 * 109.49216 * 176.93595 * 22 14 13 37 37 H 1.08992 * 109.62898 * 248.50387 * 23 11 9 38 38 H 1.09004 * 109.62835 * 8.89355 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0068 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0673 -2.4859 0.1475 11 7 1.9386 -3.6417 -0.1678 12 6 1.2410 -4.9320 -0.0604 13 6 2.0164 -5.8250 0.9139 14 7 3.4186 -5.9110 0.4844 15 6 4.1569 -6.8926 1.2901 16 6 5.5098 -7.1341 0.6720 17 6 6.6054 -6.4250 1.1273 18 6 7.8445 -6.6505 0.5481 19 6 7.9378 -7.5931 -0.4648 20 6 6.7988 -8.2642 -0.8670 21 7 5.6350 -8.0199 -0.2967 22 6 4.0712 -4.5956 0.5291 23 6 3.3799 -3.6522 -0.4610 24 1 -0.4851 0.8400 0.0004 25 1 1.1995 -5.4084 -1.0399 26 1 0.2292 -4.7744 0.3133 27 1 1.5768 -6.8224 0.9218 28 1 1.9685 -5.3984 1.9159 29 1 3.5998 -7.8288 1.3224 30 1 4.2833 -6.5099 2.3029 31 1 6.4968 -5.7013 1.9217 32 1 8.7172 -6.1079 0.8803 33 1 8.8878 -7.7971 -0.9362 34 1 6.8622 -8.9971 -1.6576 35 1 3.9945 -4.1856 1.5362 36 1 5.1216 -4.7013 0.2580 37 1 3.5439 -4.0056 -1.4789 38 1 3.7827 -2.6450 -0.3537 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273998516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:49 Heat of formation + Delta-G solvation = 17.276840 kcal Electronic energy + Delta-G solvation = -21032.506783 eV Core-core repulsion = 17875.241851 eV Total energy + Delta-G solvation = -3157.264932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.37550 -38.67707 -36.54573 -33.77808 -32.58287 -32.46110 -31.57093 -30.44548 -27.83631 -26.23651 -24.40163 -23.70497 -22.95060 -21.73867 -20.65278 -18.76359 -16.96322 -16.73643 -16.28628 -15.86002 -15.65504 -15.10733 -14.54366 -14.30884 -14.27173 -13.97861 -13.82748 -13.46015 -13.31719 -12.84228 -12.47432 -12.08616 -11.85121 -11.61688 -11.37607 -11.16102 -10.96426 -10.89140 -10.71954 -10.47374 -10.22393 -9.97235 -9.94781 -9.47558 -9.12599 -8.85880 -8.16204 -7.57990 -7.17423 -6.20104 -4.64547 0.97138 1.18062 3.14520 3.19610 3.21143 3.59239 4.07337 4.16297 4.26099 4.55433 4.61111 4.66749 4.71180 4.92238 5.00534 5.28912 5.31162 5.46658 5.53060 5.56935 5.67223 5.69968 5.80435 5.87317 5.88466 6.01262 6.03788 6.11058 6.27501 6.47194 6.56237 6.57105 6.74490 7.20900 7.29059 7.45053 7.62424 7.95871 8.13314 8.37318 9.01814 9.45084 10.57766 10.76141 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.004312 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.952658 B = 6492.091919 C = 7291.555490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.561 3.439 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.126 3.874 13 C 0.047 3.953 14 N -0.527 5.527 15 C 0.102 3.898 16 C 0.145 3.855 17 C -0.168 4.168 18 C -0.076 4.076 19 C -0.180 4.180 20 C 0.099 3.901 21 N -0.466 5.466 22 C 0.038 3.962 23 C 0.129 3.871 24 H 0.269 0.731 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.515 -12.717 1.800 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.089 0.911 9 C 0.367 3.633 10 O -0.461 6.461 11 N -0.382 5.382 12 C 0.002 3.998 13 C -0.081 4.081 14 N -0.252 5.252 15 C -0.027 4.027 16 C 0.007 3.993 17 C -0.188 4.188 18 C -0.102 4.102 19 C -0.200 4.200 20 C -0.058 4.058 21 N -0.176 5.176 22 C -0.091 4.091 23 C 0.005 3.995 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.882 -13.200 1.121 19.188 hybrid contribution 1.511 1.478 1.041 2.357 sum 15.393 -11.721 2.162 19.468 Atomic orbital electron populations 1.69991 1.07071 1.27422 1.35316 1.25710 0.94597 1.00239 0.92565 0.86464 0.79876 0.81172 0.79436 1.19232 1.20527 1.19295 1.20913 0.93466 0.89310 1.54563 0.91058 1.18240 0.86757 0.82208 0.76120 1.90587 1.14673 1.86012 1.54853 1.48239 1.07715 1.05287 1.76988 1.21193 0.96606 0.84567 0.97460 1.22540 0.87733 1.00078 0.97782 1.61894 1.02178 1.07540 1.53579 1.20949 0.90420 0.97668 0.93627 1.21120 0.95011 0.91249 0.91923 1.22039 0.93500 1.01169 1.02115 1.21556 0.97662 0.96116 0.94836 1.22126 1.00361 0.98485 0.99054 1.22777 0.87721 0.97604 0.97723 1.67505 1.26484 1.15989 1.07575 1.22653 0.98065 0.88876 0.99481 1.21459 0.82616 0.99204 0.96270 0.92015 0.93213 0.89570 0.90583 0.94646 0.89129 0.93406 0.84966 0.84955 0.85022 0.82903 0.94487 0.90975 0.93394 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.10 11.86 55.55 0.66 -22.44 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.00 29.56 -169.99 -5.02 14.97 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.32 8.84 -35.63 -0.32 -15.64 16 8 H 0.07 1.82 5.73 -52.48 -0.30 1.51 16 9 C 0.56 16.16 7.61 -12.99 -0.10 16.06 16 10 O -0.58 -18.89 14.55 5.20 0.08 -18.82 16 11 N -0.64 -15.07 3.01 -174.12 -0.52 -15.60 16 12 C 0.13 2.57 6.58 -3.61 -0.02 2.55 16 13 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 14 N -0.53 -8.26 4.62 -235.76 -1.09 -9.35 16 15 C 0.10 1.32 5.29 -4.98 -0.03 1.29 16 16 C 0.15 1.85 5.64 -82.59 -0.47 1.39 16 17 C -0.17 -1.80 8.18 -39.44 -0.32 -2.13 16 18 C -0.08 -0.69 10.18 -39.28 -0.40 -1.09 16 19 C -0.18 -1.59 10.11 -39.44 -0.40 -1.99 16 20 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 21 N -0.47 -6.25 10.27 -9.48 -0.10 -6.35 16 22 C 0.04 0.62 5.38 -3.70 -0.02 0.60 16 23 C 0.13 2.53 6.52 -3.60 -0.02 2.50 16 24 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.09 1.91 7.11 -51.93 -0.37 1.54 16 27 H 0.08 1.07 7.99 -51.93 -0.41 0.65 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.13 7.97 -51.93 -0.41 0.72 16 30 H 0.05 0.56 8.02 -51.93 -0.42 0.15 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.05 5.97 -51.93 -0.31 0.74 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.89 5.38 -51.93 -0.28 1.61 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -35.18 313.09 -8.71 -43.90 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.02 Total: 1.45 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.41 Total: 7.51 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -1.05 Total: -53.73 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.08 Total: -18.82 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.18 -8.71 -43.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273998516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.172 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds