Wall clock time and date at job start Mon Mar 30 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48495 * 109.47440 * 240.00269 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47193 * 120.00283 * 3 2 1 7 7 C 1.40047 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99791 * 351.83611 * 9 7 2 11 11 N 1.34776 * 120.00215 * 171.84084 * 9 7 2 12 12 C 1.47074 * 120.88104 * 174.85196 * 11 9 7 13 13 C 1.53239 * 108.52123 * 231.20618 * 12 11 9 14 14 N 1.46903 * 109.33900 * 306.16831 * 13 12 11 15 15 C 1.46897 * 111.00426 * 187.25323 * 14 13 12 16 16 C 1.50689 * 109.47473 * 170.00264 * 15 14 13 17 17 C 1.38221 * 119.62223 * 95.00181 * 16 15 14 18 18 C 1.38629 * 119.16484 * 180.27546 * 17 16 15 19 19 C 1.38674 * 118.42133 * 359.48273 * 18 17 16 20 20 C 1.38187 * 119.15837 * 0.47508 * 19 18 17 21 21 N 1.31861 * 119.61789 * 274.97718 * 16 15 14 22 22 C 1.46902 * 111.26730 * 63.10482 * 14 13 12 23 23 C 1.47082 * 120.87986 * 354.87053 * 11 9 7 24 24 H 0.97003 * 120.00345 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.62580 * 111.49613 * 12 11 9 26 26 H 1.09001 * 109.78633 * 351.00977 * 12 11 9 27 27 H 1.08999 * 109.49685 * 186.21518 * 13 12 11 28 28 H 1.09003 * 109.51676 * 66.14099 * 13 12 11 29 29 H 1.09001 * 109.46875 * 49.99908 * 15 14 13 30 30 H 1.09004 * 109.47215 * 290.00523 * 15 14 13 31 31 H 1.08004 * 120.41815 * 0.02562 * 17 16 15 32 32 H 1.08003 * 120.79309 * 179.72017 * 18 17 16 33 33 H 1.07993 * 120.41968 * 180.21882 * 19 18 17 34 34 H 1.07996 * 119.61892 * 179.77109 * 20 19 18 35 35 H 1.09000 * 109.49576 * 56.85412 * 22 14 13 36 36 H 1.08998 * 109.49216 * 176.93595 * 22 14 13 37 37 H 1.08992 * 109.62898 * 248.50387 * 23 11 9 38 38 H 1.09004 * 109.62835 * 8.89355 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0068 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0673 -2.4859 0.1475 11 7 1.9386 -3.6417 -0.1678 12 6 1.2410 -4.9320 -0.0604 13 6 2.0164 -5.8250 0.9139 14 7 3.4186 -5.9110 0.4844 15 6 4.1569 -6.8926 1.2901 16 6 5.5098 -7.1341 0.6720 17 6 6.6054 -6.4250 1.1273 18 6 7.8445 -6.6505 0.5481 19 6 7.9378 -7.5931 -0.4648 20 6 6.7988 -8.2642 -0.8670 21 7 5.6350 -8.0199 -0.2967 22 6 4.0712 -4.5956 0.5291 23 6 3.3799 -3.6522 -0.4610 24 1 -0.4851 0.8400 0.0004 25 1 1.1995 -5.4084 -1.0399 26 1 0.2292 -4.7744 0.3133 27 1 1.5768 -6.8224 0.9218 28 1 1.9685 -5.3984 1.9159 29 1 3.5998 -7.8288 1.3224 30 1 4.2833 -6.5099 2.3029 31 1 6.4968 -5.7013 1.9217 32 1 8.7172 -6.1079 0.8803 33 1 8.8878 -7.7971 -0.9362 34 1 6.8622 -8.9971 -1.6576 35 1 3.9945 -4.1856 1.5362 36 1 5.1216 -4.7013 0.2580 37 1 3.5439 -4.0056 -1.4789 38 1 3.7827 -2.6450 -0.3537 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273998516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:49 Heat of formation + Delta-G solvation = -8.505318 kcal Electronic energy + Delta-G solvation = -21033.624782 eV Core-core repulsion = 17875.241851 eV Total energy + Delta-G solvation = -3158.382930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24168 -40.25289 -38.32933 -35.40555 -34.63425 -33.32891 -32.73263 -31.86167 -29.33235 -28.04783 -25.74481 -24.74079 -24.19126 -22.86778 -22.16430 -20.52547 -18.56698 -17.88355 -17.63502 -17.16475 -16.64265 -16.50524 -16.04506 -15.87772 -15.80136 -15.46997 -15.25466 -14.46909 -14.34969 -14.11362 -13.91778 -13.55547 -13.29219 -13.16401 -12.78152 -12.74472 -12.63872 -12.49005 -12.23256 -12.01069 -11.96473 -11.79024 -10.92269 -10.73020 -10.28294 -9.92631 -9.80794 -9.46774 -9.02984 -8.29704 -6.84534 0.20039 0.44753 1.39823 1.43432 1.55025 2.23490 2.45248 2.61486 2.85897 3.19960 3.37236 3.58143 3.85916 3.98985 4.06974 4.10153 4.17917 4.27688 4.32924 4.34804 4.39693 4.57095 4.63430 4.64937 4.77048 4.82150 4.84972 4.91616 4.93329 5.15167 5.27282 5.33427 5.37436 5.71264 5.84405 5.99441 6.02027 6.12190 6.39757 6.87217 7.16880 7.40781 8.45098 8.66568 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.004312 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.952658 B = 6492.091919 C = 7291.555490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.252 1.252 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.570 4.570 8 H 0.094 0.906 9 C 0.541 3.459 10 O -0.633 6.633 11 N -0.647 5.647 12 C 0.123 3.877 13 C 0.061 3.939 14 N -0.534 5.534 15 C 0.105 3.895 16 C 0.121 3.879 17 C -0.174 4.174 18 C -0.077 4.077 19 C -0.172 4.172 20 C 0.083 3.917 21 N -0.501 5.501 22 C 0.052 3.948 23 C 0.126 3.874 24 H 0.274 0.726 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.172 0.828 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.186 -12.736 1.906 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.606 4.606 8 H 0.112 0.888 9 C 0.348 3.652 10 O -0.521 6.521 11 N -0.384 5.384 12 C -0.001 4.001 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.022 4.022 16 C -0.017 4.017 17 C -0.195 4.195 18 C -0.103 4.103 19 C -0.191 4.191 20 C -0.074 4.074 21 N -0.211 5.211 22 C -0.076 4.076 23 C 0.003 3.997 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.190 0.810 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.610 -13.281 1.224 22.090 hybrid contribution 0.431 1.345 0.950 1.702 sum 18.041 -11.935 2.174 21.741 Atomic orbital electron populations 1.70176 1.09633 1.29027 1.36589 1.26999 0.95481 1.04962 0.91113 0.85099 0.78265 0.74719 0.80418 1.17581 1.20030 1.17701 1.21441 0.94745 0.89716 1.54687 0.88824 1.18694 0.86440 0.84135 0.75962 1.90533 1.16897 1.87272 1.57348 1.48134 1.09393 1.05005 1.75823 1.21289 0.95920 0.84117 0.98743 1.22345 0.88340 1.00294 0.95771 1.61836 1.01757 1.07668 1.54686 1.20950 0.90709 0.96729 0.93831 1.21074 0.95193 0.92524 0.92885 1.22212 0.93702 1.01116 1.02453 1.21964 0.97983 0.95972 0.94341 1.22498 1.01056 0.97242 0.98344 1.23218 0.87651 0.98372 0.98178 1.67434 1.28259 1.16900 1.08479 1.22467 0.98724 0.88432 0.98019 1.21613 0.80464 1.00085 0.97554 0.91583 0.92787 0.92304 0.87843 0.95447 0.88900 0.92125 0.83887 0.82066 0.81881 0.81044 0.94946 0.88664 0.93058 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.11 11.86 21.83 0.26 -50.86 16 2 C 0.03 1.65 5.50 85.31 0.47 2.11 16 3 Si 1.00 40.77 29.56 68.60 2.03 42.80 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 7 C -0.57 -32.45 8.84 24.83 0.22 -32.24 16 8 H 0.09 4.73 5.73 -2.91 -0.02 4.71 16 9 C 0.54 32.40 7.61 86.36 0.66 33.05 16 10 O -0.63 -43.62 14.55 -4.32 -0.06 -43.68 16 11 N -0.65 -31.05 3.01 -823.02 -2.48 -33.53 16 12 C 0.12 5.18 6.58 86.35 0.57 5.75 16 13 C 0.06 1.99 5.62 86.38 0.49 2.47 16 14 N -0.53 -16.07 4.62 -899.82 -4.16 -20.23 16 15 C 0.11 2.56 5.29 85.55 0.45 3.01 16 16 C 0.12 2.85 5.64 42.55 0.24 3.09 16 17 C -0.17 -3.27 8.18 22.36 0.18 -3.08 16 18 C -0.08 -1.12 10.18 22.47 0.23 -0.89 16 19 C -0.17 -2.42 10.11 22.36 0.23 -2.20 16 20 C 0.08 1.55 11.18 84.67 0.95 2.49 16 21 N -0.50 -12.60 10.27 -183.90 -1.89 -14.49 16 22 C 0.05 1.62 5.38 86.38 0.46 2.08 16 23 C 0.13 4.89 6.52 86.35 0.56 5.45 16 24 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.06 2.77 7.11 -2.39 -0.02 2.75 16 27 H 0.10 2.79 7.99 -2.39 -0.02 2.78 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 2.18 7.97 -2.39 -0.02 2.16 16 30 H 0.06 1.31 8.02 -2.38 -0.02 1.29 16 31 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 2.54 5.97 -2.39 -0.01 2.52 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 3.52 5.38 -2.38 -0.01 3.51 16 Total: -1.00 -80.01 313.09 0.47 -79.54 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 1.06 Total: 19.34 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 5.70 Total: 21.11 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -8.26 Total: -119.10 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.06 Total: -43.68 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -80.01 0.47 -79.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273998516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.035 kcal (2) G-P(sol) polarization free energy of solvation -80.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds