Wall clock time and date at job start Mon Mar 30 2020 02:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99766 * 2 1 4 4 H 1.48493 * 109.47231 * 240.00435 * 3 2 1 5 5 H 1.48504 * 109.47056 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46727 * 120.00208 * 3 2 1 7 7 C 1.40047 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00591 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99552 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00151 * 352.10299 * 9 7 2 11 11 N 1.34774 * 119.99639 * 172.37779 * 9 7 2 12 12 C 1.47076 * 120.88274 * 184.20049 * 11 9 7 13 13 C 1.53700 * 108.27890 * 128.75383 * 12 11 9 14 14 N 1.46899 * 109.25116 * 54.08582 * 13 12 11 15 15 C 1.46901 * 110.99818 * 172.61039 * 14 13 12 16 16 C 1.50706 * 109.46981 * 314.30141 * 15 14 13 17 17 C 1.38646 * 120.78708 * 269.71875 * 16 15 14 18 18 C 1.38206 * 119.16213 * 179.75628 * 17 16 15 19 19 N 1.31868 * 120.76255 * 0.53149 * 18 17 16 20 20 C 1.31873 * 121.72469 * 359.74062 * 19 18 17 21 21 C 1.38206 * 120.76512 * 359.97438 * 20 19 18 22 22 C 1.46904 * 111.27092 * 296.75477 * 14 13 12 23 23 C 1.47084 * 120.88423 * 4.48248 * 11 9 7 24 24 H 0.97002 * 120.00317 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.63463 * 248.52546 * 12 11 9 26 26 H 1.09007 * 109.62896 * 9.10696 * 12 11 9 27 27 H 1.09000 * 109.65196 * 294.08507 * 13 12 11 28 28 H 1.08993 * 109.42067 * 173.95068 * 13 12 11 29 29 H 1.09000 * 109.47772 * 74.29987 * 15 14 13 30 30 H 1.09003 * 109.47772 * 194.30379 * 15 14 13 31 31 H 1.08001 * 120.42534 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.62209 * 180.25348 * 18 17 16 33 33 H 1.08003 * 119.61809 * 180.02562 * 20 19 18 34 34 H 1.07998 * 120.41874 * 180.02562 * 21 20 19 35 35 H 1.08998 * 109.49167 * 303.15037 * 22 14 13 36 36 H 1.08996 * 109.48967 * 183.06779 * 22 14 13 37 37 H 1.08999 * 109.62386 * 350.89403 * 23 11 9 38 38 H 1.08997 * 109.62901 * 111.47127 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0670 -2.4855 0.1447 11 7 1.9401 -3.6424 -0.1559 12 6 1.2165 -4.9194 -0.2508 13 6 1.7144 -5.6639 -1.4998 14 7 3.1775 -5.7824 -1.4420 15 6 3.6796 -6.6380 -2.5255 16 6 2.8329 -7.8814 -2.6170 17 6 3.1616 -9.0185 -1.8949 18 6 2.3587 -10.1385 -2.0001 19 7 1.2978 -10.1367 -2.7832 20 6 0.9582 -9.0754 -3.4885 21 6 1.7101 -7.9173 -3.4295 22 6 3.8208 -4.4621 -1.4728 23 6 3.4089 -3.6678 -0.2289 24 1 -0.4851 0.8400 0.0004 25 1 1.4125 -5.5183 0.6386 26 1 0.1469 -4.7286 -0.3388 27 1 1.4295 -5.1103 -2.3945 28 1 1.2698 -6.6586 -1.5301 29 1 3.6310 -6.0952 -3.4694 30 1 4.7130 -6.9166 -2.3194 31 1 4.0316 -9.0276 -1.2550 32 1 2.6055 -11.0269 -1.4378 33 1 0.0819 -9.1114 -4.1188 34 1 1.4267 -7.0512 -4.0091 35 1 3.5064 -3.9252 -2.3678 36 1 4.9037 -4.5854 -1.4836 37 1 3.7894 -2.6491 -0.3023 38 1 3.8115 -4.1487 0.6626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274135353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:34 Heat of formation + Delta-G solvation = 17.207085 kcal Electronic energy + Delta-G solvation = -21083.388722 eV Core-core repulsion = 17926.120765 eV Total energy + Delta-G solvation = -3157.267957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45698 -38.74544 -36.70135 -34.18687 -32.61519 -32.01766 -31.36373 -30.61237 -27.92207 -26.30710 -24.48462 -23.67713 -23.03224 -21.73188 -20.68993 -18.82166 -16.80891 -16.71638 -16.42995 -15.82674 -15.73463 -15.08835 -14.67770 -14.35875 -14.32157 -14.05465 -13.87286 -13.66494 -13.59460 -12.60021 -12.44201 -12.38492 -11.75409 -11.62555 -11.35959 -11.22412 -11.02790 -10.90227 -10.79373 -10.54555 -10.26268 -10.01400 -9.69140 -9.58005 -9.24092 -8.88540 -8.24885 -7.61622 -7.22606 -6.23171 -4.67931 1.02367 1.10191 3.12537 3.17891 3.19329 3.63256 4.03778 4.13878 4.34505 4.46797 4.53376 4.56820 4.63918 4.97246 5.02332 5.23299 5.34783 5.39461 5.46905 5.54668 5.64630 5.68069 5.72913 5.82033 5.82469 5.88373 6.05143 6.19438 6.25251 6.41925 6.50007 6.57706 6.67478 7.11089 7.19810 7.41906 7.57687 7.85287 8.09619 8.32781 8.98718 9.41006 10.54416 10.72736 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036681 B = 0.003948 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.162608 B = 7090.263966 C = 7443.354287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.560 3.440 10 O -0.578 6.578 11 N -0.644 5.644 12 C 0.127 3.873 13 C 0.041 3.959 14 N -0.529 5.529 15 C 0.089 3.911 16 C -0.033 4.033 17 C -0.154 4.154 18 C 0.095 3.905 19 N -0.489 5.489 20 C 0.096 3.904 21 C -0.166 4.166 22 C 0.042 3.958 23 C 0.128 3.872 24 H 0.269 0.731 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 -13.775 -6.251 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.383 5.383 12 C 0.002 3.998 13 C -0.088 4.088 14 N -0.254 5.254 15 C -0.038 4.038 16 C -0.041 4.041 17 C -0.174 4.174 18 C -0.062 4.062 19 N -0.198 5.198 20 C -0.060 4.060 21 C -0.187 4.187 22 C -0.087 4.087 23 C 0.003 3.997 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.150 0.850 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.669 -14.600 -5.776 17.474 hybrid contribution 0.881 1.902 -0.779 2.237 sum 8.550 -12.697 -6.555 16.652 Atomic orbital electron populations 1.69995 1.07088 1.27463 1.35221 1.25722 0.94610 1.00285 0.92555 0.86450 0.79859 0.81100 0.79461 1.19293 1.20539 1.19184 1.20920 0.93512 0.89259 1.54558 0.90967 1.18256 0.86833 0.82166 0.76149 1.90588 1.14863 1.86038 1.54612 1.48266 1.04899 1.06022 1.79120 1.21280 0.97992 0.85586 0.94909 1.22739 0.87178 0.99973 0.98893 1.62152 1.06324 1.13544 1.43396 1.21142 0.97971 0.90681 0.94035 1.20227 0.94657 0.95253 0.93965 1.22039 1.01741 0.93556 1.00097 1.22756 0.90393 0.97807 0.95218 1.67662 1.16285 1.29289 1.06610 1.22719 0.98622 0.88385 0.96290 1.22143 0.96055 0.99936 1.00546 1.22602 0.98350 0.88242 0.99490 1.21495 0.82928 1.00320 0.94979 0.91996 0.93387 0.89683 0.94715 0.90684 0.93693 0.89553 0.84612 0.82856 0.82828 0.85002 0.94338 0.90610 0.88505 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.89 11.86 55.55 0.66 -22.24 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.55 -15.11 8.86 -35.63 -0.32 -15.43 16 8 H 0.07 1.80 5.71 -52.49 -0.30 1.50 16 9 C 0.56 15.94 7.62 -12.99 -0.10 15.84 16 10 O -0.58 -18.78 14.54 5.20 0.08 -18.70 16 11 N -0.64 -14.74 3.00 -173.84 -0.52 -15.26 16 12 C 0.13 2.56 6.61 -3.36 -0.02 2.54 16 13 C 0.04 0.67 4.82 -3.46 -0.02 0.65 16 14 N -0.53 -7.63 4.77 -235.46 -1.12 -8.75 16 15 C 0.09 1.01 5.47 -4.97 -0.03 0.99 16 16 C -0.03 -0.37 4.15 -104.32 -0.43 -0.80 16 17 C -0.15 -1.59 9.82 -39.44 -0.39 -1.98 16 18 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 19 N -0.49 -5.96 10.36 -13.25 -0.14 -6.10 16 20 C 0.10 1.06 11.18 -17.55 -0.20 0.87 16 21 C -0.17 -1.84 7.92 -39.44 -0.31 -2.15 16 22 C 0.04 0.63 5.58 -3.70 -0.02 0.61 16 23 C 0.13 2.35 6.51 -3.60 -0.02 2.32 16 24 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.91 7.09 -51.93 -0.37 1.54 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.14 5.54 -51.93 -0.29 0.85 16 29 H 0.04 0.50 8.04 -51.93 -0.42 0.09 16 30 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.10 1.83 5.38 -51.93 -0.28 1.55 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -34.51 311.69 -8.53 -43.04 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.01 Total: 1.98 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -2.14 Total: 6.59 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -1.12 Total: -52.35 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.08 Total: -18.70 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.51 -8.53 -43.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274135353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.244 kcal (2) G-P(sol) polarization free energy of solvation -34.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds