Wall clock time and date at job start Mon Mar 30 2020 01:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48500 * 109.47122 * 239.99950 * 3 2 1 5 5 H 1.48497 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46575 * 120.00275 * 3 2 1 7 7 C 1.40052 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99990 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00127 * 359.97438 * 7 2 1 10 10 O 1.21695 * 120.00028 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00504 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00069 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.46696 * 180.02562 * 12 11 9 14 14 C 1.38880 * 120.33422 * 90.00139 * 13 12 11 15 15 C 1.38305 * 118.50194 * 179.97438 * 14 13 12 16 16 C 1.39139 * 119.09902 * 0.02562 * 15 14 13 17 17 N 1.38993 * 119.70540 * 180.02562 * 16 15 14 18 18 C 1.48536 * 111.00115 * 62.60366 * 17 16 15 19 19 C 1.54940 * 103.22712 * 159.72435 * 18 17 16 20 20 C 1.54598 * 102.91922 * 322.58113 * 19 18 17 21 21 C 1.47898 * 110.99970 * 179.97438 * 17 16 15 22 22 N 1.32397 * 120.58601 * 0.02562 * 16 15 14 23 23 C 1.31977 * 121.62351 * 359.97438 * 22 16 15 24 24 H 0.96998 * 120.00526 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99351 * 0.02562 * 11 9 7 26 26 H 1.08992 * 109.47276 * 60.00476 * 12 11 9 27 27 H 1.09003 * 109.47236 * 299.99616 * 12 11 9 28 28 H 1.07998 * 120.75276 * 0.24937 * 14 13 12 29 29 H 1.07999 * 120.44559 * 179.97438 * 15 14 13 30 30 H 1.09006 * 110.66304 * 278.14998 * 18 17 16 31 31 H 1.08997 * 110.66764 * 41.28333 * 18 17 16 32 32 H 1.08998 * 110.72061 * 204.22944 * 19 18 17 33 33 H 1.08995 * 110.87886 * 81.01145 * 19 18 17 34 34 H 1.08999 * 110.31025 * 263.04523 * 20 19 18 35 35 H 1.08997 * 110.30769 * 140.87521 * 20 19 18 36 36 H 1.09001 * 109.91911 * 333.50923 * 21 17 16 37 37 H 1.09003 * 109.91611 * 94.80580 * 21 17 16 38 38 H 1.08002 * 119.56941 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0582 -2.4806 -0.0005 11 7 1.9490 -3.6478 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0004 14 6 2.6507 -6.5950 1.1987 15 6 3.5487 -7.6460 1.1551 16 6 3.9639 -8.1305 -0.0813 17 7 4.8656 -9.1867 -0.1398 18 6 4.2914 -10.4113 0.4741 19 6 5.1522 -11.5484 -0.1315 20 6 5.3874 -11.0688 -1.5822 21 6 5.1723 -9.5447 -1.5416 22 7 3.5078 -7.5944 -1.2027 23 6 2.6505 -6.5909 -1.1913 24 1 -0.4851 0.8400 0.0004 25 1 2.9190 -3.6477 -0.0002 26 1 0.5903 -4.9740 -0.8913 27 1 0.5895 -4.9744 0.8887 28 1 2.3076 -6.2008 2.1438 29 1 3.9230 -8.0841 2.0685 30 1 4.3979 -10.3842 1.5586 31 1 3.2452 -10.5288 0.1920 32 1 4.6071 -12.4922 -0.1209 33 1 6.0983 -11.6450 0.4010 34 1 4.6680 -11.5342 -2.2559 35 1 6.4053 -11.2992 -1.8966 36 1 4.3374 -9.2701 -2.1862 37 1 6.0789 -9.0335 -1.8655 38 1 2.2997 -6.1791 -2.1260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274161244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:40 Heat of formation + Delta-G solvation = 7.413906 kcal Electronic energy + Delta-G solvation = -20203.179125 eV Core-core repulsion = 17045.486504 eV Total energy + Delta-G solvation = -3157.692621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78335 -38.57307 -37.15647 -34.18813 -32.59195 -32.38521 -31.91032 -29.47515 -29.15150 -26.63909 -24.79431 -23.73768 -22.45474 -21.05958 -20.75116 -19.67449 -17.71906 -17.33840 -16.73079 -15.86452 -15.40498 -15.10083 -14.75103 -14.42972 -14.19941 -13.86859 -13.82074 -13.29913 -13.07084 -12.89491 -12.63415 -12.28050 -12.24988 -11.66582 -11.53551 -11.44727 -11.29181 -11.14535 -10.88338 -10.84743 -10.46555 -10.26748 -9.91775 -9.73867 -9.33092 -8.84750 -8.21141 -7.58802 -7.53596 -6.18712 -4.64557 1.13249 1.35030 3.16433 3.21152 3.23212 3.43521 3.81909 4.12586 4.22452 4.37194 4.58133 4.66181 4.67281 4.94453 5.03457 5.06534 5.09744 5.16627 5.20787 5.24422 5.45030 5.50485 5.54939 5.64756 5.69637 5.81093 5.83952 5.90257 6.04693 6.13006 6.32568 6.40648 6.55465 6.64260 7.09938 7.43294 7.90659 8.00071 8.06159 8.32090 9.02096 9.51434 10.59091 10.77236 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042445 B = 0.003033 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.525572 B = 9228.565256 C = 9427.895510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.763 5.763 12 C 0.177 3.823 13 C -0.159 4.159 14 C -0.042 4.042 15 C -0.180 4.180 16 C 0.291 3.709 17 N -0.463 5.463 18 C 0.043 3.957 19 C -0.124 4.124 20 C -0.133 4.133 21 C 0.035 3.965 22 N -0.519 5.519 23 C 0.136 3.864 24 H 0.269 0.731 25 H 0.381 0.619 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 -20.398 0.308 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.420 5.420 12 C 0.052 3.948 13 C -0.162 4.162 14 C -0.069 4.069 15 C -0.202 4.202 16 C 0.060 3.940 17 N -0.181 5.181 18 C -0.083 4.083 19 C -0.162 4.162 20 C -0.171 4.171 21 C -0.092 4.092 22 N -0.233 5.233 23 C -0.021 4.021 24 H 0.080 0.920 25 H 0.212 0.788 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.413 -20.494 -0.219 22.554 hybrid contribution 0.112 1.019 0.446 1.118 sum 9.526 -19.475 0.227 21.681 Atomic orbital electron populations 1.70006 1.07052 1.27405 1.35255 1.25707 0.94626 1.00282 0.92605 0.86426 0.79808 0.80994 0.79471 1.19263 1.20552 1.19287 1.20844 0.93568 0.89322 1.54433 0.91473 1.18236 0.87196 0.82320 0.76341 1.90604 1.14061 1.86717 1.54985 1.46233 1.08609 1.04220 1.82889 1.19673 0.91758 0.81709 1.01657 1.21107 1.01320 0.99893 0.93916 1.21470 0.93572 0.93150 0.98669 1.21495 1.01262 0.99877 0.97560 1.19910 0.90211 0.94369 0.89541 1.62034 1.34772 1.04426 1.16917 1.23306 0.97247 0.87521 1.00191 1.22507 1.00410 0.97396 0.95871 1.22453 1.02377 0.95325 0.96991 1.22866 1.03037 0.94725 0.88598 1.67529 1.12811 1.12793 1.30124 1.22511 0.91113 0.90483 0.98024 0.92027 0.78790 0.92255 0.92374 0.84450 0.84910 0.89317 0.92799 0.90630 0.90431 0.91286 0.90833 0.89948 0.90174 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.10 11.83 55.55 0.66 -22.44 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.23 29.56 -169.99 -5.02 15.20 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -15.44 9.54 -35.63 -0.34 -15.78 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.77 7.75 -12.99 -0.10 15.67 16 10 O -0.58 -18.76 15.02 5.19 0.08 -18.68 16 11 N -0.76 -17.04 5.54 -62.90 -0.35 -17.39 16 12 C 0.18 3.35 5.82 -5.19 -0.03 3.32 16 13 C -0.16 -2.44 5.27 -104.46 -0.55 -2.99 16 14 C -0.04 -0.57 9.85 -39.32 -0.39 -0.96 16 15 C -0.18 -2.26 9.46 -39.22 -0.37 -2.64 16 16 C 0.29 3.94 6.21 -155.03 -0.96 2.98 16 17 N -0.46 -5.37 5.30 -169.25 -0.90 -6.27 16 18 C 0.04 0.38 6.05 -1.89 -0.01 0.37 16 19 C -0.12 -0.86 7.06 -24.87 -0.18 -1.04 16 20 C -0.13 -1.02 6.93 -25.39 -0.18 -1.20 16 21 C 0.03 0.37 6.35 -2.77 -0.02 0.35 16 22 N -0.52 -7.63 8.15 -12.44 -0.10 -7.73 16 23 C 0.14 2.02 10.85 -17.57 -0.19 1.83 16 24 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 25 H 0.38 7.73 8.44 -40.82 -0.34 7.39 16 26 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 27 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 28 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.13 1.38 8.05 -52.49 -0.42 0.95 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.51 8.00 -51.93 -0.42 0.09 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.99 6.50 -51.93 -0.34 0.66 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -34.38 321.62 -9.49 -43.86 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.29 Total: 6.33 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -3.41 Total: 2.27 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.69 Total: -53.83 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.68 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.38 -9.49 -43.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274161244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.277 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds